Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_G18
         (644 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1617 - 34815889-34816080,34816185-34816412,34816591-348168...    31   1.0  
07_01_0627 + 4685077-4685155,4685978-4686336,4686761-4686862,468...    30   1.8  
09_03_0056 - 11936264-11939677                                         29   4.2  
04_04_1619 - 34825922-34825998,34826109-34826200,34827281-348273...    28   5.5  
05_07_0063 - 27428056-27428184,27428321-27428460,27428698-274289...    28   7.3  
03_05_1143 + 30709825-30709926,30710105-30710260,30710356-307104...    28   7.3  

>04_04_1617 -
           34815889-34816080,34816185-34816412,34816591-34816851,
           34816943-34817299,34817466-34817579,34817653-34817726,
           34817839-34818022,34818349-34818494,34818628-34818986,
           34819912-34820132
          Length = 711

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +2

Query: 203 NSTCPTPLRDLTKIVNTWIDKFVSLFEYLYPD 298
           N  C  P  D+   V+ WID+    FE+L PD
Sbjct: 141 NFVCDYPEGDIRLSVDDWIDRDYDYFEFLTPD 172


>07_01_0627 +
           4685077-4685155,4685978-4686336,4686761-4686862,
           4687528-4687598,4687871-4687989,4688327-4688422,
           4688527-4688636,4688734-4688814,4689124-4689224,
           4689663-4689771,4689971-4690076,4690140-4690225,
           4690324-4690449,4690816-4690902
          Length = 543

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/59 (23%), Positives = 30/59 (50%)
 Frame = +1

Query: 292 SRFWRRLNMLEDIAIDYSTYFKVDVLEGFKTVQDVVDNMLTRLEELTSVLQMVKLKNGD 468
           S FWR    + + ++     +K D+    + + D+V+ M +R+ ++  VL    L +G+
Sbjct: 402 SNFWRIREGISEASVKVGAVYKYDLSIPVEKLYDIVEEMRSRVGDMGQVLGYGHLGDGN 460


>09_03_0056 - 11936264-11939677
          Length = 1137

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
 Frame = +2

Query: 176  IMELFIKVYNSTC----PTPLRDLTKIVNTWIDKFVSLFEYLYPD 298
            I  LFI V  S+     P   R LTK+  TW  K +SL   L P+
Sbjct: 945  IASLFITVTGSSSRGSSPVVFRSLTKLSVTWCRKLMSLDNLLQPE 989


>04_04_1619 -
           34825922-34825998,34826109-34826200,34827281-34827399,
           34827507-34827734,34827904-34828164,34828258-34828614,
           34828803-34828916,34828990-34829063,34829176-34829359,
           34829685-34829830,34829951-34830309,34835569-34835789
          Length = 743

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 203 NSTCPTPLRDLTKIVNTWIDKFVSLFEYLYPD 298
           N  C  P  D+   ++ WI++    FE+L PD
Sbjct: 141 NFVCDYPEGDIRLSIDDWINRDYDYFEFLAPD 172


>05_07_0063 -
           27428056-27428184,27428321-27428460,27428698-27428926,
           27429231-27429281,27429411-27429636,27430230-27430300,
           27430466-27430585,27430671-27430865,27431088-27431152,
           27431232-27431322,27431607-27431707,27431767-27431817,
           27432076-27432177,27432406-27432510,27432600-27432663,
           27433023-27433151
          Length = 622

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 17/69 (24%), Positives = 33/69 (47%)
 Frame = +1

Query: 385 VQDVVDNMLTRLEELTSVLQMVKLKNGDCSNIVTEDIIKYRREINVLGKRISTLSNVLMF 564
           VQD+ + + + +E+   ++  V   N D   + T D IK  RE++  G+R   +   +  
Sbjct: 171 VQDIENMVRSFIEKPNCIILAVSPANQD---LATSDAIKISREVDPKGERTFGVLTKIDL 227

Query: 565 LSNNVDTVE 591
           +    D V+
Sbjct: 228 MDKGTDAVD 236


>03_05_1143 + 30709825-30709926,30710105-30710260,30710356-30710439,
            30710769-30710882,30711019-30711111,30711888-30711977,
            30712157-30712227,30712300-30712374,30712481-30712568,
            30712748-30712806,30712893-30712956,30713030-30713095,
            30713283-30713435,30713522-30713626,30713739-30713974,
            30714104-30714173,30714286-30714339,30714501-30714557,
            30714662-30714741,30716056-30717919
          Length = 1226

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 20/89 (22%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
 Frame = +1

Query: 286  FVSRFWRRLNMLEDIAIDYSTYFKVDVLEGFKT-VQDVVDNMLTRLEELTSVLQMVKLKN 462
            F  +F+   N L  +   Y      D  +     V+ V D+ ++  +E+  +++ VKLKN
Sbjct: 811  FKRKFFEGSNSLTTVDTQYEDVEMRDATDDEDLEVKHVHDSAISTFKEILRLVR-VKLKN 869

Query: 463  GDCSNIVTEDIIKYRREINVLGKRISTLS 549
                 + T+D ++Y + + +   +   LS
Sbjct: 870  VHDKLVTTQDAVEYFKLLEMASTKAEELS 898


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,551,879
Number of Sequences: 37544
Number of extensions: 305389
Number of successful extensions: 609
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 609
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)