Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_G17
         (338 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    24   0.49 
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    24   0.49 
AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain tran...    24   0.49 
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           24   0.49 
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   4.6  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      20   6.0  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      20   6.0  

>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.
          Length = 322

 Score = 23.8 bits (49), Expect = 0.49
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -2

Query: 202 SPGLLILLPPPQSQNIPPRQ 143
           SP L  LL  PQ++  PP Q
Sbjct: 123 SPALRALLTRPQAKKTPPNQ 142


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 23.8 bits (49), Expect = 0.49
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 76  SPXPSAXVPDFSPCSTQXTTNMS 144
           +P P   VP+ S  +TQ TT +S
Sbjct: 430 TPKPGQWVPEKSTSTTQRTTTVS 452


>AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain
           transcription factor Fushitarazu protein.
          Length = 290

 Score = 23.8 bits (49), Expect = 0.49
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -2

Query: 202 SPGLLILLPPPQSQNIPPRQ 143
           SP L  LL  PQ++  PP Q
Sbjct: 123 SPALRALLTRPQAKKTPPNQ 142


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 23.8 bits (49), Expect = 0.49
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -2

Query: 202 SPGLLILLPPPQSQNIPPRQ 143
           SP L  LL  PQ++  PP Q
Sbjct: 123 SPALRALLTRPQAKKTPPNQ 142


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 20.6 bits (41), Expect = 4.6
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 5   PAAXRRPGSPRSSTFQRR 58
           PA+  R G+PRS+   R+
Sbjct: 937 PASSDRSGTPRSTNGDRK 954


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 20.2 bits (40), Expect = 6.0
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = -2

Query: 178 PPPQSQNIPPRQ 143
           PPP    IPP Q
Sbjct: 137 PPPAHMGIPPYQ 148


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 20.2 bits (40), Expect = 6.0
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = -2

Query: 178 PPPQSQNIPPRQ 143
           PPP    IPP Q
Sbjct: 29  PPPAHMGIPPYQ 40


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.311    0.128    0.388 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 67,018
Number of Sequences: 336
Number of extensions: 1142
Number of successful extensions: 16
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  6558670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.0 bits)