Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_G17
         (338 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25D12.05 |trm1||N2,N2-dimethylguanosine tRNA methyltransfera...    26   1.4  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    26   1.8  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    26   1.8  
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p...    24   7.3  
SPBC3B8.02 |php5||CCAAT-binding factor complex subunit Php5|Schi...    23   9.6  

>SPBC25D12.05 |trm1||N2,N2-dimethylguanosine tRNA
           methyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 548

 Score = 26.2 bits (55), Expect = 1.4
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = -3

Query: 321 PLLAPFXDVFLQLFIQV--RPILVLTLDEXWISLTLLFRSGC 202
           PLL+   D + ++F+Q+  +P+LV  L     SL +   SGC
Sbjct: 281 PLLSLSIDFYFRVFVQIKAKPVLVKNLQSQ--SLLIYHCSGC 320


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
            pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 25.8 bits (54), Expect = 1.8
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 241  FIKRQDQNRSDLDEQLKEYIXEWRKQRAKEED 336
            FIKR DQ    L+E+L   + E   +  KE+D
Sbjct: 1087 FIKRVDQLEEALNEKLARLVGEQMVEGDKEKD 1118


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1919

 Score = 25.8 bits (54), Expect = 1.8
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 241  FIKRQDQNRSDLDEQLKEYIXEWRKQRAKEED 336
            FIKR DQ    L+E+L   + E   +  KE+D
Sbjct: 1087 FIKRVDQLEEALNEKLARLVGEQMVEGDKEKD 1118


>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 275

 Score = 23.8 bits (49), Expect = 7.3
 Identities = 15/74 (20%), Positives = 25/74 (33%)
 Frame = +1

Query: 73  KSPXPSAXVPDFSPCSTQXTTNMSDXXXXXXXXXXXXXXXXXXTPAPKQEGEGDPXFIKR 252
           +SP P +  P  SP   +  TN+ +                    AP   G  +   ++ 
Sbjct: 169 RSPSPVSFAPQKSPVENETETNVDNGDTKISESNEKSGTEVEQQSAPNSNGNEEVNNLEP 228

Query: 253 QDQNRSDLDEQLKE 294
             QN S  +   +E
Sbjct: 229 VGQNESKQEPPKEE 242


>SPBC3B8.02 |php5||CCAAT-binding factor complex subunit
           Php5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 415

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 17  RRPGSPRSSTFQRRCAAGPS 76
           RRPGSPR    Q+R  + P+
Sbjct: 362 RRPGSPRQFDQQQRLYSQPN 381


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.311    0.128    0.388 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,164,824
Number of Sequences: 5004
Number of extensions: 17794
Number of successful extensions: 43
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 98026656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)