Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_F_G17
(338 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0230 - 28540114-28540323,28540414-28540548,28540779-285409... 32 0.13
06_03_0191 - 17720512-17721435,17721718-17721843,17721940-177221... 28 2.1
08_01_0998 - 10136050-10138356 27 2.8
01_06_0226 - 27684093-27685091 27 2.8
08_02_0512 + 18012909-18013025,18013656-18013751,18014102-180143... 27 3.8
03_05_0211 - 22020515-22020687,22020801-22020831,22022060-220221... 27 3.8
03_02_0521 - 9093932-9094252 27 3.8
01_01_0190 + 1656376-1656565,1656655-1657388 27 3.8
01_05_0344 + 21172101-21172233,21172332-21172402,21172492-211726... 27 5.0
07_03_0537 - 19218461-19218982,19219482-19219868,19219993-192201... 26 6.6
06_03_0938 - 26126669-26127115,26127197-26127619,26127727-26128047 26 6.6
01_03_0083 - 12282531-12282860 26 6.6
11_06_0610 - 25449085-25453284 26 8.7
08_02_0076 + 11967606-11967905,11969125-11969223,11969813-119741... 26 8.7
02_05_0717 + 31190626-31191234,31191954-31192394,31192699-311928... 26 8.7
>05_07_0230 -
28540114-28540323,28540414-28540548,28540779-28540953,
28541104-28541300,28541824-28541945,28542887-28543193
Length = 381
Score = 31.9 bits (69), Expect = 0.13
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +1
Query: 217 QEGEGDPXFIKRQDQNRSDLDEQLKEYIXE-WRKQRAKEE 333
+EG GD F++ + LDEQL+ ++ W ++ KEE
Sbjct: 2 KEGGGDGGFVRADQIDLKSLDEQLERHLSRAWTMEKRKEE 41
>06_03_0191 - 17720512-17721435,17721718-17721843,17721940-17722140,
17722189-17722332,17722415-17722722,17723433-17723568,
17723748-17723841,17723976-17724073,17724951-17725004,
17725704-17726150,17726227-17726393,17726540-17726663,
17726751-17726837,17727000-17727056,17727492-17727560,
17727664-17727811,17727893-17728116,17728842-17728958,
17729649-17729742,17730573-17730640,17733278-17733334,
17733412-17733511,17733638-17733674,17734077-17734200,
17735254-17735322,17735371-17735410,17735905-17735993,
17736849-17736953,17737033-17737104,17737814-17737936,
17738049-17738117,17738966-17739059,17739145-17739231,
17740184-17740351,17740436-17740552,17741484-17741590,
17741671-17741803,17742564-17742667,17743504-17743629,
17744148-17744216,17744996-17745064,17745278-17745358,
17745444-17745533,17745896-17746000,17747803-17747873,
17748320-17748461,17749266-17749330,17750081-17750168,
17750236-17750325,17750437-17750673,17751064-17751170,
17751625-17751832,17752376-17752546
Length = 2366
Score = 27.9 bits (59), Expect = 2.1
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -3
Query: 306 FXDVFLQLFIQVRPILVLTLDEXWISLTLLFRSGC 202
F +F++L V ++ L W SLT LF GC
Sbjct: 1930 FMVLFVELLADVFSVIQTALKIRWHSLTTLFLQGC 1964
>08_01_0998 - 10136050-10138356
Length = 768
Score = 27.5 bits (58), Expect = 2.8
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = -2
Query: 208 RVSPGLLILLPPP-QSQNIPPRQTCWLXIEWSTGRSRAXRHSAXVTWTGSTATLEC 44
R+S LL+L PP S I + W + S A S TW+ +T++ C
Sbjct: 17 RISLLLLLLSTPPCSSSTIIQHGEAESLLRWKSTLSAAASASPLTTWSPATSSSAC 72
>01_06_0226 - 27684093-27685091
Length = 332
Score = 27.5 bits (58), Expect = 2.8
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -2
Query: 178 PPPQSQNIPPRQTCW 134
PPP + N+P R+ CW
Sbjct: 5 PPPPNPNLPYREDCW 19
>08_02_0512 +
18012909-18013025,18013656-18013751,18014102-18014389,
18014551-18014750,18015313-18015548,18015809-18015951,
18016059-18016130,18016231-18016458
Length = 459
Score = 27.1 bits (57), Expect = 3.8
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = +1
Query: 28 IAAVLHIPTSLCCRSKSPXPSA 93
+AA L PT CCR S PSA
Sbjct: 1 MAAALAFPTCCCCRRPSLRPSA 22
>03_05_0211 -
22020515-22020687,22020801-22020831,22022060-22022169,
22022715-22023102,22023344-22023397,22023739-22023849,
22023956-22024015,22024618-22024694,22026155-22026188,
22026267-22027235
Length = 668
Score = 27.1 bits (57), Expect = 3.8
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
Frame = +1
Query: 214 KQEGEGDPXFIKRQDQNRSDLDEQLKEY----IXEWRKQRAKEE 333
K+ G +K QD++ S+ E+LKE + E+ +++A+EE
Sbjct: 144 KESGSEKQEELKEQDKSGSEKQEELKEQDKSGLAEYEEKKAEEE 187
>03_02_0521 - 9093932-9094252
Length = 106
Score = 27.1 bits (57), Expect = 3.8
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 3 GRPLLAAPDRRGPPHSNVAVLP 68
GRPLL +PDR G +++A P
Sbjct: 85 GRPLLPSPDRHGKEATSMAAPP 106
>01_01_0190 + 1656376-1656565,1656655-1657388
Length = 307
Score = 27.1 bits (57), Expect = 3.8
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -2
Query: 211 ERVSPGLLILLPPPQSQNIPPRQTC 137
E V G+ I PPP + +PP TC
Sbjct: 101 ESVLRGMPIAQPPPSATAVPPLPTC 125
>01_05_0344 +
21172101-21172233,21172332-21172402,21172492-21172653,
21172995-21173100,21174242-21174439,21174565-21174631,
21174868-21175051,21175145-21175324,21175408-21175587,
21176472-21176627,21177487-21178067,21178535-21178640,
21179152-21179331,21179620-21179892
Length = 858
Score = 26.6 bits (56), Expect = 5.0
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = +1
Query: 214 KQEGEGDPXFIKRQDQNRSDLDEQLKEYI---XEWRKQR 321
+ E GDP I+R +NRS E + E I +WR+++
Sbjct: 8 RTEKGGDPELIRRSQRNRSASVELVDEVIALDDQWRQRQ 46
>07_03_0537 - 19218461-19218982,19219482-19219868,19219993-19220154,
19220464-19221117,19221233-19221277,19223300-19223845,
19223930-19224307,19224642-19225313,19225373-19225456
Length = 1149
Score = 26.2 bits (55), Expect = 6.6
Identities = 9/30 (30%), Positives = 20/30 (66%)
Frame = +1
Query: 247 KRQDQNRSDLDEQLKEYIXEWRKQRAKEED 336
+R D+ + +E+ +E +WR++R +EE+
Sbjct: 1077 ERSDEQQQQDEEEEEEEEQKWRRRRRREEE 1106
>06_03_0938 - 26126669-26127115,26127197-26127619,26127727-26128047
Length = 396
Score = 26.2 bits (55), Expect = 6.6
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -2
Query: 184 LLPPPQSQNIPPRQTCWLXI 125
+LPPP SQ++P R WL I
Sbjct: 4 MLPPP-SQSVPSRPPSWLYI 22
>01_03_0083 - 12282531-12282860
Length = 109
Score = 26.2 bits (55), Expect = 6.6
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 3 GRPLLAAPDRRGPPHSNVAVLP 68
GRPLL +PDR G ++ A P
Sbjct: 88 GRPLLPSPDRHGREATSTAAPP 109
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 25.8 bits (54), Expect = 8.7
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -2
Query: 232 LPHPLV*ERVSPGLLILLPPPQSQNIPP 149
LP P V P + LPPP+ +++PP
Sbjct: 1320 LPPPAVKPLPPPVPQVSLPPPKQESLPP 1347
>08_02_0076 +
11967606-11967905,11969125-11969223,11969813-11974124,
11974177-11974211
Length = 1581
Score = 25.8 bits (54), Expect = 8.7
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = -3
Query: 336 ILLLGPLLAPFXDVFLQLFIQVRPILVLTLDEXWISLTLL 217
++L GP F D F Q +VR I VL L+ + L L
Sbjct: 659 LMLFGPHDLDFADTFRQELNEVRSIRVLKLEMVFFDLDSL 698
>02_05_0717 +
31190626-31191234,31191954-31192394,31192699-31192802,
31193000-31194384,31194508-31194548,31195065-31195133,
31195335-31195435,31195747-31195825,31195939-31196037,
31196119-31196187,31197609-31197658,31197749-31197925,
31198045-31198152,31198224-31198290
Length = 1132
Score = 25.8 bits (54), Expect = 8.7
Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Frame = +1
Query: 202 TPAPKQEGEGDPXFIK----RQDQNRSDLDEQLKEYIXEWRKQRAKEED 336
TP+ E EG P +++ +S E+ + EW ++R++EE+
Sbjct: 68 TPSTPSEAEGSPFSSSVGSGAEERRQSVAAERRRSQEEEWERRRSQEEE 116
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.311 0.128 0.388
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,071,346
Number of Sequences: 37544
Number of extensions: 173245
Number of successful extensions: 422
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 420
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 470052804
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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