Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_G17
         (338 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41011-8|AAA82291.2|  321|Caenorhabditis elegans Collagen protei...    27   2.6  
Z35663-11|CAA84732.2|  791|Caenorhabditis elegans Hypothetical p...    27   3.4  
U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated p...    27   4.5  
U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin pr...    27   4.5  
Z69664-9|CAA93519.2| 1470|Caenorhabditis elegans Hypothetical pr...    26   6.0  
Z68880-10|CAA93100.2| 1470|Caenorhabditis elegans Hypothetical p...    26   6.0  
AF308449-1|AAL09435.1| 1347|Caenorhabditis elegans PXF isoform C...    26   6.0  
AF308447-1|AAL09433.1| 1470|Caenorhabditis elegans PXF isoform A...    26   6.0  
AF170796-1|AAF22963.1| 1470|Caenorhabditis elegans RA-GEF protein.     26   6.0  

>U41011-8|AAA82291.2|  321|Caenorhabditis elegans Collagen protein
           114 protein.
          Length = 321

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 14/33 (42%), Positives = 15/33 (45%)
 Frame = +2

Query: 5   PAAXRRPGSPRSSTFQRRCAAGPSHXCRVPXCP 103
           P A   PG P  +T Q  C A     CRV  CP
Sbjct: 140 PGAPGLPGVPGKTTIQAPCEAASPPPCRV--CP 170


>Z35663-11|CAA84732.2|  791|Caenorhabditis elegans Hypothetical
           protein T04A8.13 protein.
          Length = 791

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 202 SPGLLILLPPPQSQNIPP 149
           +P    L+PPP  QNIPP
Sbjct: 196 APASTALVPPPPRQNIPP 213


>U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated
            protein 44, isoform f protein.
          Length = 6994

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +1

Query: 208  APKQEGEGDPXFIKRQDQNRSDLD-EQLKEYIXEWRKQRAKEE 333
            +PK+ GE    F   ++Q+RSD      KE I +++ + + E+
Sbjct: 3950 SPKESGEAFSQFTSEKEQDRSDSPIHSQKEDISQFQNESSPED 3992


>U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin
            protein.
          Length = 6994

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +1

Query: 208  APKQEGEGDPXFIKRQDQNRSDLD-EQLKEYIXEWRKQRAKEE 333
            +PK+ GE    F   ++Q+RSD      KE I +++ + + E+
Sbjct: 3950 SPKESGEAFSQFTSEKEQDRSDSPIHSQKEDISQFQNESSPED 3992


>Z69664-9|CAA93519.2| 1470|Caenorhabditis elegans Hypothetical protein
            T14G10.2a protein.
          Length = 1470

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +1

Query: 43   HIPTSLCCRSKSPXPSAXVPDFSPCSTQXTTNMS 144
            H PTS  CRS+SP  S+    FS  ++   T+M+
Sbjct: 1355 HSPTSPRCRSRSP-ASSGCSSFSTIASIAATSMA 1387


>Z68880-10|CAA93100.2| 1470|Caenorhabditis elegans Hypothetical
            protein T14G10.2a protein.
          Length = 1470

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +1

Query: 43   HIPTSLCCRSKSPXPSAXVPDFSPCSTQXTTNMS 144
            H PTS  CRS+SP  S+    FS  ++   T+M+
Sbjct: 1355 HSPTSPRCRSRSP-ASSGCSSFSTIASIAATSMA 1387


>AF308449-1|AAL09435.1| 1347|Caenorhabditis elegans PXF isoform C
            protein.
          Length = 1347

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +1

Query: 43   HIPTSLCCRSKSPXPSAXVPDFSPCSTQXTTNMS 144
            H PTS  CRS+SP  S+    FS  ++   T+M+
Sbjct: 1232 HSPTSPRCRSRSP-ASSGCSSFSTIASIAATSMA 1264


>AF308447-1|AAL09433.1| 1470|Caenorhabditis elegans PXF isoform A
            protein.
          Length = 1470

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +1

Query: 43   HIPTSLCCRSKSPXPSAXVPDFSPCSTQXTTNMS 144
            H PTS  CRS+SP  S+    FS  ++   T+M+
Sbjct: 1355 HSPTSPRCRSRSP-ASSGCSSFSTIASIAATSMA 1387


>AF170796-1|AAF22963.1| 1470|Caenorhabditis elegans RA-GEF protein.
          Length = 1470

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +1

Query: 43   HIPTSLCCRSKSPXPSAXVPDFSPCSTQXTTNMS 144
            H PTS  CRS+SP  S+    FS  ++   T+M+
Sbjct: 1355 HSPTSPRCRSRSP-ASSGCSSFSTIASIAATSMA 1387


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.311    0.128    0.388 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,846,646
Number of Sequences: 27780
Number of extensions: 119594
Number of successful extensions: 313
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 313
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 429601520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)