Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_G17
         (338 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   3.1  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    20   7.1  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    20   7.1  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    20   9.4  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 3.1
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -2

Query: 178 PPPQSQNIP 152
           PPP +QN+P
Sbjct: 766 PPPSAQNVP 774


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 20.2 bits (40), Expect = 7.1
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -3

Query: 324 GPLLAPFXD 298
           GPLLAP+ D
Sbjct: 99  GPLLAPYPD 107


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 20.2 bits (40), Expect = 7.1
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = +2

Query: 98  CPTSPRAPLNXQPTCLT 148
           CP +   PLN  P  LT
Sbjct: 213 CPPTLACPLNPNPQPLT 229


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = +3

Query: 27  DRRGPPHSNVAVLPVQV 77
           D+ GP H+ +  + VQ+
Sbjct: 54  DQTGPTHAPIFTIAVQI 70


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.311    0.128    0.388 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,221
Number of Sequences: 438
Number of extensions: 1451
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7715466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.5 bits)