Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_G16
         (831 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory...    31   0.20 
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    27   2.5  
SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ...    26   5.7  
SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   7.5  
SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    25   10.0 

>SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory
           factor |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 633

 Score = 31.1 bits (67), Expect = 0.20
 Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
 Frame = -1

Query: 318 ELFQVDAIEASGAIEAMGTSSNVIGQSNQQPGIVDIG-EHGQVTKDEATNPQWKAVTAFF 142
           EL +  A  A   + + G  S+ +   ++ PG+VD+G E+ +V  DEAT  +  A  AF 
Sbjct: 377 ELLERSADTADADVPS-GLYSHALVNLHEHPGLVDLGSENIRVPIDEATALKSFAKAAFL 435

Query: 141 AQTRSRR*RVVGYRFGHF 88
             + ++      Y FG +
Sbjct: 436 GHSSAQLRMGAVYEFGKY 453


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 26/85 (30%), Positives = 35/85 (41%)
 Frame = +1

Query: 112 NTLSSTSSLGKKCCYCFPLRIGCFILGYLTMFTNVYNTGLLITLTNYIGAGSHSFDRTTS 291
           +TL++T      C    P   G  + G   ++ +VY TG  +  T      S S   TTS
Sbjct: 83  STLTATEVSSSLCTTPCP-GYGSLMCGG-DLYWSVYLTGNGVLQTT---VSSSSVSSTTS 137

Query: 292 FDSIDLEELSEPTTTLQPAQQSSES 366
             S      S  TTT  P+  SS S
Sbjct: 138 SSSSSSPSSSSTTTTTSPSSSSSSS 162


>SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +3

Query: 537 SVPDNDHHDSGLNVTWLGHCCSILLHHG-VQYL 632
           S+P +   +  L  +WL H  ++L +HG ++YL
Sbjct: 386 SLPLDQEKELSLRKSWLSHFSNLLFNHGQLKYL 418


>SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 511

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = +1

Query: 103 IPYNTLSSTSSLGKKCCYCFPLRIGCFILGYLTMFTNVYNTGLLITLTNYIGAGSHSFD 279
           I +  + S  ++ KK C    LR    ILG+L ++   + +   I L   I  G H F+
Sbjct: 185 ISFINIRSWRTIPKKWCVLQVLRYFHRILGHLWLYVGFFESCTGIVLLAGIFKGQHIFN 243


>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 33/135 (24%), Positives = 54/135 (40%)
 Frame = +1

Query: 58  VRIQNIPNFDKMTKPIPYNTLSSTSSLGKKCCYCFPLRIGCFILGYLTMFTNVYNTGLLI 237
           V I  +P F  ++  IP  +L+     GK+      L I   +LG +    +++  GL +
Sbjct: 250 VYILIMPAFGVVSHIIP--SLAHKPIFGKEGMLWAMLSIA--LLGLMVWSHHLFTVGLDV 305

Query: 238 TLTNYIGAGSHSFDRTTSFDSIDLEELSEPTTTLQPAQQSSESPLLSGVGFVLLMTIVIN 417
               Y  A +      T      ++  S   T    A Q S  P+L  +GF++L TI   
Sbjct: 306 DTRAYFSAATMVIAIPTG-----IKIFSWLATLTGGAIQWSRVPMLYAIGFLILFTIGGL 360

Query: 418 AAWLLVNIACVVGLH 462
              +L N    +  H
Sbjct: 361 TGVILSNSVLDIAFH 375


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,214,998
Number of Sequences: 5004
Number of extensions: 61533
Number of successful extensions: 170
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)