Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_F_G15
(745 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0036 + 25786530-25786756,25788000-25788076,25788538-257886... 32 0.55
09_04_0411 + 17366559-17367497 31 0.97
05_07_0228 - 28526885-28527046,28527151-28527241,28528315-285284... 31 1.3
09_06_0010 - 20193577-20193921,20194014-20194160,20194239-201944... 29 2.9
07_01_0725 - 5532803-5533324,5533631-5533657,5534285-5534398,553... 29 3.9
06_03_1338 - 29440373-29440534,29440993-29441083,29441799-294419... 29 3.9
09_04_0413 + 17372852-17373787 28 9.0
09_04_0412 + 17369935-17370873 28 9.0
03_04_0169 - 17959262-17959304,17959441-17959532,17959682-179597... 28 9.0
02_04_0001 - 18816492-18816741,18816881-18817050,18817244-188173... 28 9.0
>01_06_0036 +
25786530-25786756,25788000-25788076,25788538-25788625,
25788706-25788786,25788866-25788940,25789048-25789149,
25789589-25789726,25791559-25791585,25791696-25791786,
25792423-25792584
Length = 355
Score = 31.9 bits (69), Expect = 0.55
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +1
Query: 565 LKDVVLALKWVQRNVDTFGGDPNNVTIFGNSSG 663
+ D + +V N+ ++GGDPN + + G S+G
Sbjct: 194 VSDASQGISYVCNNIASYGGDPNRIYLVGQSAG 226
>09_04_0411 + 17366559-17367497
Length = 312
Score = 31.1 bits (67), Expect = 0.97
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Frame = +1
Query: 526 LSINDFTAPGN---CGLKDVVLALKWVQRNVDTF---GGDPNNVTIFGNSSGGVMVHXMM 687
+S+N AP N G D AL+W D + GD V + G+S+GG +VH M+
Sbjct: 110 VSVNYRLAPENPLPAGYDDSWAALQWAVSAQDDWIAEHGDTERVFVAGDSAGGNIVHEML 169
>05_07_0228 -
28526885-28527046,28527151-28527241,28528315-28528455,
28528560-28528625,28529180-28529317,28529759-28529860,
28530156-28530236,28530314-28530383,28530598-28530674,
28531035-28531483
Length = 458
Score = 30.7 bits (66), Expect = 1.3
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +1
Query: 481 VVFVTCG-FRLGAFGFLSINDFTAPGNCGLKDVVLALKWVQRNVDTFGGDPNNVTIFGNS 657
V FVT G + +G F +I+D + + G+ +V V +GGDPN + + G S
Sbjct: 215 VAFVTGGAWIIGNFPQGTISDMVSDASDGIS-------FVCETVGAYGGDPNQIYLMGQS 267
Query: 658 SG 663
+G
Sbjct: 268 AG 269
>09_06_0010 -
20193577-20193921,20194014-20194160,20194239-20194495,
20194619-20194826
Length = 318
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Frame = +1
Query: 199 PYAKPPVGHLR-FLPPLPATPWTNEKDCTQDPPMALTW 309
P+ PPV R F P PA P T + PP +W
Sbjct: 240 PHLPPPVSQRRQFQAPPPAAPTTTKTAAAPAPPPTASW 277
>07_01_0725 -
5532803-5533324,5533631-5533657,5534285-5534398,
5534564-5534731,5535951-5536193,5537178-5537261,
5537357-5538117,5539637-5539730,5540633-5540899,
5541311-5541316,5542538-5542657
Length = 801
Score = 29.1 bits (62), Expect = 3.9
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = -3
Query: 371 GVETSIYRQSSEPII--CSYLNDQVKAIGGSWVQSFSLVQGVAGRGGKNRRCPTGGFAYG 198
G+ T+ + +S+ P+ S L + W++ ++ G GG+NRR GG +G
Sbjct: 689 GLATAFFNESNTPLARPLSELMQEANQEVPQWLERYAARSSFGGGGGRNRR-SGGGARFG 747
>06_03_1338 -
29440373-29440534,29440993-29441083,29441799-29441942,
29442094-29442159,29442589-29442729,29443077-29443178,
29443264-29443338,29443469-29443549,29443670-29443739,
29444063-29444139,29444392-29444660
Length = 425
Score = 29.1 bits (62), Expect = 3.9
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +1
Query: 565 LKDVVLALKWVQRNVDTFGGDPNNVTIFGNSSG 663
++D + +V N+ ++GGDP + + G S+G
Sbjct: 202 VEDASQGIAFVCNNIASYGGDPERIYLVGQSAG 234
>09_04_0413 + 17372852-17373787
Length = 311
Score = 27.9 bits (59), Expect = 9.0
Identities = 33/129 (25%), Positives = 52/129 (40%), Gaps = 9/129 (6%)
Frame = +1
Query: 328 IIGSEDCLYIEVSTPTLK-PKKLMPVMFWIGSYGF----SFNMDYL-YDTSLINNQDVVF 489
++ ++ L + V P P K +PV+ + F +F+ Y Y SL VV
Sbjct: 49 VVDADTGLSVRVFLPARPDPSKKLPVLVFFHGGAFVIESAFSTTYHGYAASLAAAAGVVA 108
Query: 490 VTCGFRLGAFGFLSINDFTAPGNCGLKDVVLALKWVQRNVDTF---GGDPNNVTIFGNSS 660
V+ +RL P D AL+W D + D + + G+S+
Sbjct: 109 VSVEYRLAP---------EHPVPAAYDDAWAALQWAASGKDEWLAEHADNGRLFLAGDSA 159
Query: 661 GGVMVHXMM 687
GG MVH +M
Sbjct: 160 GGNMVHNVM 168
>09_04_0412 + 17369935-17370873
Length = 312
Score = 27.9 bits (59), Expect = 9.0
Identities = 31/123 (25%), Positives = 56/123 (45%), Gaps = 10/123 (8%)
Frame = +1
Query: 349 LYIEVSTPTLKPKKL---MPVMFWIGSYGFSFNMDYLYDTSLINNQDVVFVTCGFRLGAF 519
L++ V P ++ ++L +PV+ + GF D++ +N ++
Sbjct: 55 LFVRVFLPKVQDQELGKKLPVLVYFHGGGFIIESA---DSATYHN----YLNSAAAAAGV 107
Query: 520 GFLSINDFTAPGN---CGLKDVVLALKW-VQRNVD---TFGGDPNNVTIFGNSSGGVMVH 678
+S++ AP N G D AL+W V + D T GD V + G+S+GG +VH
Sbjct: 108 LVVSVDYRLAPENPLPAGYDDSWAALQWAVSAHADDWITEHGDTARVFVAGDSAGGNIVH 167
Query: 679 XMM 687
++
Sbjct: 168 DVL 170
>03_04_0169 -
17959262-17959304,17959441-17959532,17959682-17959759,
17959938-17960075,17960174-17960302,17960556-17960685,
17960797-17960974,17961177-17961315,17961399-17961488,
17961633-17961794,17961966-17962130,17962250-17962387,
17962827-17963006,17963405-17963533,17963878-17964113,
17964233-17964395,17965260-17965628,17965724-17965828
Length = 887
Score = 27.9 bits (59), Expect = 9.0
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = +1
Query: 562 GLKDVVLA-LKWVQRNVDTFGGDPNNVTIFGNSSG-GVMVHXMMFSPMATGL 711
GL D +LA L WV+ N+ GDP + SG V + MM + + GL
Sbjct: 76 GLWDEILAALTWVEGNMGAVLGDPRRPLLLSVRSGAAVSMPGMMDTVLNLGL 127
>02_04_0001 -
18816492-18816741,18816881-18817050,18817244-18817388,
18817495-18817565,18817910-18817993,18818103-18818222,
18818310-18818480,18818955-18819044,18821893-18821985,
18822073-18822405
Length = 508
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/43 (30%), Positives = 19/43 (44%)
Frame = +1
Query: 130 KEGPIYGYKETTNEGTYCKFKGIPYAKPPVGHLRFLPPLPATP 258
+EGP++G +E+T+ PP G PP P P
Sbjct: 11 QEGPVHGPQESTSSAAAAAAADASIPAPPEGAGDVSPPSPPPP 53
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,357,673
Number of Sequences: 37544
Number of extensions: 450185
Number of successful extensions: 1066
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1028
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1066
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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