Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_G14
         (835 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL023842-5|CAA19519.1|  393|Caenorhabditis elegans Hypothetical ...   105   3e-23
Z67883-1|CAA91805.1|  415|Caenorhabditis elegans Hypothetical pr...   100   3e-21
U21550-1|AAC47236.1|  378|Caenorhabditis elegans ECA39 protein.        94   1e-19
AF026208-2|AAB71269.3|  774|Caenorhabditis elegans Prion-like-(q...    34   0.14 
U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter...    33   0.19 
AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical ...    28   7.2  
U39678-12|AAK39209.2| 1185|Caenorhabditis elegans Hypothetical p...    28   9.5  

>AL023842-5|CAA19519.1|  393|Caenorhabditis elegans Hypothetical
           protein Y44A6D.5 protein.
          Length = 393

 Score =  105 bits (253), Expect = 3e-23
 Identities = 51/92 (55%), Positives = 65/92 (70%)
 Frame = +2

Query: 560 SFKYEDLQVRLAAPYQLTPKPEAKELGFGKYFTDHMLKIYYHKELGGWQKPEIMPFENLN 739
           SF+Y +L V  +   Q  P   AK LGFG+YF+DHM+ I +  +  GW  P+I PF+N +
Sbjct: 23  SFQYANLVVEKSTKKQRIPSDPAK-LGFGRYFSDHMIDIDWDVK-EGWIAPKICPFQNFS 80

Query: 740 IHPAAKALHYAIQLFEGLKAYRGVDDKIXLFR 835
           IHPAAK LHYAI++FEG+KAY GVD KI LFR
Sbjct: 81  IHPAAKVLHYAIEIFEGMKAYHGVDGKIRLFR 112


>Z67883-1|CAA91805.1|  415|Caenorhabditis elegans Hypothetical
           protein K02A4.1 protein.
          Length = 415

 Score = 99.5 bits (237), Expect = 3e-21
 Identities = 47/106 (44%), Positives = 68/106 (64%), Gaps = 1/106 (0%)
 Frame = +2

Query: 521 PTQKPHPQITPEISFKYEDLQVRLAAPYQLTPKP-EAKELGFGKYFTDHMLKIYYHKELG 697
           P ++ H +   + +F + DL+++LA P QL  KP +  +L FG  + D+M+   +  E G
Sbjct: 31  PREEIHKEYDRKKTFYHRDLEIQLAGPTQLKTKPLDPTKLKFGHTYADYMMTCDWDAERG 90

Query: 698 GWQKPEIMPFENLNIHPAAKALHYAIQLFEGLKAYRGVDDKIXLFR 835
            W  P+I P   L IHP AK LHYA +LFEG+KAYRG+D+KI +FR
Sbjct: 91  -WHHPKIEPIGELKIHPGAKVLHYASELFEGMKAYRGIDNKIRMFR 135


>U21550-1|AAC47236.1|  378|Caenorhabditis elegans ECA39 protein.
          Length = 378

 Score = 94.3 bits (224), Expect = 1e-19
 Identities = 47/107 (43%), Positives = 68/107 (63%), Gaps = 2/107 (1%)
 Frame = +2

Query: 521 PTQKPHPQITPEISFKYEDLQVRLAAPYQLTPKP-EAKELGFGKYFTDHMLKIYYHKELG 697
           P ++ H +   + +F + DL+++LA P QL  KP +  +L FG  + D+M+   +  E G
Sbjct: 11  PREEIHKEYDRKKTFYHRDLEIQLAGPTQLKTKPLDPTKLKFGHTYADYMMTCDWIAERG 70

Query: 698 GWQKPEIMPFENLNIHPAAKALHYAIQLF-EGLKAYRGVDDKIXLFR 835
            W  P+I P   L IHP AK LHYA +LF EG+KAYRG+D+KI +FR
Sbjct: 71  -WHHPKIEPIGELKIHPGAKVLHYASELFSEGMKAYRGIDNKIRMFR 116


>AF026208-2|AAB71269.3|  774|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 40
           protein.
          Length = 774

 Score = 33.9 bits (74), Expect = 0.14
 Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 5/100 (5%)
 Frame = +2

Query: 371 NFKMPIRRSQVLVKWIFENQHKLQTIRWCSSSLRYKELED----SVQADHVAP-SPTQKP 535
           N +  I  +  ++   FENQ K Q+I         K L D    S+QA  V+  +PT   
Sbjct: 337 NIRQKITDASRIISTNFENQRKEQSIVVQQQVDELKVLPDLTDSSIQARSVSVVAPTAPT 396

Query: 536 HPQITPEISFKYEDLQVRLAAPYQLTPKPEAKELGFGKYF 655
           HPQ+ P+++      QV L    Q+ P+ +  +  +  ++
Sbjct: 397 HPQVAPQVA-----PQVALQTAQQVAPQVQQPQQPYNNFW 431


>U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 6 protein.
          Length = 1254

 Score = 33.5 bits (73), Expect = 0.19
 Identities = 12/45 (26%), Positives = 25/45 (55%)
 Frame = +2

Query: 485 EDSVQADHVAPSPTQKPHPQITPEISFKYEDLQVRLAAPYQLTPK 619
           E++    HV P PT+K   ++TP++   +++      AP+ + P+
Sbjct: 436 EETTTKSHVVPKPTKKGTVKVTPKLELSFDEPTEITKAPHPVKPR 480


>AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical
            protein C08G9.2 protein.
          Length = 2224

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 84   IFFRICDLNAQFDECTTTYGASVVIGR 4
            +F   CDLN  FDE  + +G    +GR
Sbjct: 1163 VFIPDCDLNGNFDEVQSHFGLMWCVGR 1189


>U39678-12|AAK39209.2| 1185|Caenorhabditis elegans Hypothetical
           protein C39D10.7 protein.
          Length = 1185

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
 Frame = +2

Query: 443 TIRWCSSSLRYKELEDSVQ-ADHVAPSPTQKPHPQITP 553
           TI  C + L Y +L +     +HV   P  KP P  TP
Sbjct: 813 TINRCPAGLFYSKLNNRCDYKEHVEDCPEYKPTPSTTP 850


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,815,446
Number of Sequences: 27780
Number of extensions: 406012
Number of successful extensions: 991
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 987
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2072006206
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)