Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_F_G13
(758 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz... 33 0.058
SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre... 30 0.31
SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce... 28 1.7
SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|... 28 1.7
SPCC1322.14c |vtc4||vacuolar transporter chaperone |Schizosaccha... 27 3.8
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 3.8
SPBC21.04 |med8|sep15|mediator complex subunit Med8|Schizosaccha... 26 5.1
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc... 26 6.7
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz... 26 6.7
SPAPB1A11.04c |||transcription factor |Schizosaccharomyces pombe... 26 6.7
SPCC4G3.09c |gyp3||GTPase activating protein Gyp3|Schizosaccharo... 26 6.7
SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch... 25 8.9
SPAC1071.09c |||DNAJ domain protein, DNAJC9 family|Schizosacchar... 25 8.9
SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pomb... 25 8.9
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch... 25 8.9
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 8.9
>SPAC22E12.11c |set3||histone lysine methyltransferase
Set3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 32.7 bits (71), Expect = 0.058
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Frame = +1
Query: 484 NMSRRSLSQFRIQGPNTSPDEVDRLS--ATSAWTATTVRKRYTAID 615
++SRRS S +Q P TSPD +D+ S T TTV K++ ++D
Sbjct: 568 SLSRRSASP--LQHPRTSPDMLDKTSPCKRGLGTITTVHKKHGSVD 611
>SPBC19C2.09 |sre1||sterol regulatory element binding protein
Sre1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 900
Score = 30.3 bits (65), Expect = 0.31
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -2
Query: 469 VPERAPRGPSTKASTCSPFWGICSN 395
+P +P STKAST +PF CSN
Sbjct: 36 IPSSSPLASSTKASTSTPFVENCSN 60
>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 413
Score = 27.9 bits (59), Expect = 1.7
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +1
Query: 163 STSSQRYSTF-ADVTLSPVHAAYSASLDRSSRIGSPTYSVCSTDSSFAEQALADT 324
S+SS YS + T S A +SA RSS+ S T + +TDSS + + +D+
Sbjct: 116 SSSSYVYSVPPTNSTTSQASAKHSAVPHRSSQFQSTTLTPSTTDSSSTDVSSSDS 170
>SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|chr
2|||Manual
Length = 467
Score = 27.9 bits (59), Expect = 1.7
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 459 RSGTGGHAEYVPAVALPVPHTGTEHQ 536
+SG H+ YVP + V HTG E +
Sbjct: 203 KSGWDSHSAYVPGIGFLVWHTGRESE 228
>SPCC1322.14c |vtc4||vacuolar transporter chaperone
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 721
Score = 26.6 bits (56), Expect = 3.8
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Frame = +1
Query: 166 TSSQRYSTFADVTLSPVHAAYSASLDRSSRIGSPT----YSVCSTDSSFAEQALADTSTL 333
+SS + D +P+HA +D SRIGS + S T SF Q L + + L
Sbjct: 499 SSSVSANVLTDSENTPIHADGDNYVDEESRIGSSSTRNDNSTFQTSDSF--QELDERTNL 556
Query: 334 LD 339
LD
Sbjct: 557 LD 558
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 26.6 bits (56), Expect = 3.8
Identities = 21/56 (37%), Positives = 28/56 (50%)
Frame = +1
Query: 163 STSSQRYSTFADVTLSPVHAAYSASLDRSSRIGSPTYSVCSTDSSFAEQALADTST 330
STSS S+ + T S ++ S SS SPT S ST SS + + + TST
Sbjct: 249 STSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSPT-STSSTISSSSSSSSSPTST 303
Score = 25.4 bits (53), Expect = 8.9
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Frame = +1
Query: 163 STSSQRYSTFADVTLSPVHAAYSASLDRSSRIGSPTYSVCS--TDSSFAEQALADTST 330
S SS STF+ + ++Y +S S SP+ S S T SS + ++ TS+
Sbjct: 188 SVSSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPSSSSSSTLTSSSLSTSSIPSTSS 245
>SPBC21.04 |med8|sep15|mediator complex subunit
Med8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 200
Score = 26.2 bits (55), Expect = 5.1
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +1
Query: 97 YTTIYKNVNVLLNEINSQYERVSTSSQRYST 189
+ TI+KN N+LL++I+S ++ S T
Sbjct: 43 WPTIHKNFNILLSQIHSLSNNLAAHSHTLQT 73
>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1016
Score = 25.8 bits (54), Expect = 6.7
Identities = 18/70 (25%), Positives = 30/70 (42%)
Frame = +1
Query: 121 NVLLNEINSQYERVSTSSQRYSTFADVTLSPVHAAYSASLDRSSRIGSPTYSVCSTDSSF 300
N+ + E YE S+S D + AY+A L + + P S +T +S
Sbjct: 698 NLAIAEPEESYEYFSSSDFNTDYLDDGASRAWYLAYAAGLWANDAVYYPVSSSSTTTTST 757
Query: 301 AEQALADTST 330
+ ++ TST
Sbjct: 758 STGSVTTTST 767
>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 25.8 bits (54), Expect = 6.7
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +3
Query: 393 VLEQIPQNGLHVLAFVEGPRGARSGTGGHAEYV 491
V+E P + V+ +VE PRG RS T AE++
Sbjct: 78 VIETPPMVVVGVVGYVETPRGLRSLTTVWAEHL 110
>SPAPB1A11.04c |||transcription factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 697
Score = 25.8 bits (54), Expect = 6.7
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = -2
Query: 478 WPPVPERAPRGPSTKASTCSPFWGI 404
WP P + PS+ A T SP GI
Sbjct: 53 WPDRPNMRGKKPSSAARTLSPLTGI 77
>SPCC4G3.09c |gyp3||GTPase activating protein
Gyp3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 635
Score = 25.8 bits (54), Expect = 6.7
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
Frame = +1
Query: 106 IYKNVNVLLNEINSQYERVSTSSQRYSTFADVTLSPV---HAAYSASLDRSSRIGSPTYS 276
IY + N+L +E NS Y ++ S+ T +PV + Y + S I +
Sbjct: 91 IYSHHNILEHENNSDYASITPSNHPAFTSCAYLQNPVVDSNNEYESKFRLSLEIPPTDFL 150
Query: 277 VCSTDSSFAEQALA-DTST 330
ST+ S E L+ +TS+
Sbjct: 151 STSTELSKRESCLSTETSS 169
>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
L3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 25.4 bits (53), Expect = 8.9
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +3
Query: 393 VLEQIPQNGLHVLAFVEGPRGARSGTGGHAEYV 491
++E P + V+ +VE PRG RS T AE++
Sbjct: 78 IIETPPMVVVGVVGYVETPRGLRSLTTVWAEHL 110
>SPAC1071.09c |||DNAJ domain protein, DNAJC9
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 282
Score = 25.4 bits (53), Expect = 8.9
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = +1
Query: 625 DETGYIQNKGAVVAHDERWWITXLFVSIISG 717
D+TG ++ A + D + W+ L+ ++SG
Sbjct: 96 DKTGQLRETDADIDFDWKEWLDELYQGVVSG 126
>SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 840
Score = 25.4 bits (53), Expect = 8.9
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +1
Query: 529 NTSPDEVDRLSATSAWTATTVRKRYTAIDSSDDETGYIQ 645
NT+ + VD AT+ T AID S + G IQ
Sbjct: 801 NTTQNNVDNTQATTDNTQANTDNMQVAIDYSQNMDGQIQ 839
>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 297
Score = 25.4 bits (53), Expect = 8.9
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -2
Query: 445 PSTKASTCSPFWGICSNTRRPSC 377
PS K S CS C ++++PSC
Sbjct: 233 PSEKPSCCSQEKKSCCSSKKPSC 255
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.4 bits (53), Expect = 8.9
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Frame = +2
Query: 503 SPSSAYRDRTPAPTRWTGCPLRARGQPPRSGNDIPLS-TARTTKPATFKTRVPWWHTTSD 679
S SS + +P PT T C + PP + P++ T T ++ T P T+S
Sbjct: 267 STSSTDTNSSPLPTTSTSC-TTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSST 325
Query: 680 GGS 688
G S
Sbjct: 326 GTS 328
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,907,483
Number of Sequences: 5004
Number of extensions: 61556
Number of successful extensions: 221
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 219
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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