Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_G12
         (814 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0012 + 13737898-13740031,13740347-13740486                       29   3.3  
11_01_0782 + 6543906-6544702,6545717-6547850                           29   4.4  
02_01_0708 - 5298456-5298664,5299615-5299768,5300209-5300301,530...    29   5.8  

>03_03_0012 + 13737898-13740031,13740347-13740486
          Length = 757

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 13/55 (23%), Positives = 24/55 (43%)
 Frame = +2

Query: 158 ISSQCKLDNMXANIQSSNASKVESVITPEEVVLVLSPDSLPWYLNIILKKSNIPI 322
           ISS CKL N  +++     S    +  P+ VV ++       Y  +++ K    +
Sbjct: 508 ISSNCKLQNWPSSLNDDGWSGTSFLFLPDHVVTIMRFHIATCYCELVMHKEGFSV 562


>11_01_0782 + 6543906-6544702,6545717-6547850
          Length = 976

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
 Frame = +2

Query: 398 KTSENPK--VNLRLIFKAA-ADSELKLSALSTPILGNVNILRYLSLAYPTIIPYDHNDHI 568
           K  E+PK  V LR + +   + S  KL+      L N+  L+YL L    +  +   D+ 
Sbjct: 758 KLLESPKFVVLLRGLQELCISSSATKLTTGLLSALSNLRKLKYLKLIADQLEEFIIKDNA 817

Query: 569 VDNLLDICHVLER 607
           + +LL +C VL R
Sbjct: 818 LPSLLSLCFVLNR 830


>02_01_0708 -
           5298456-5298664,5299615-5299768,5300209-5300301,
           5300644-5300847,5302034-5302174,5302723-5302827,
           5303485-5303874,5304573-5304713,5304756-5304845,
           5305779-5306288
          Length = 678

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = +2

Query: 614 EKNKEAVVNRLFAHYKTWVYGDK-FSVVDLA 703
           +  K+ + N L A +K W+YG+K  SV+++A
Sbjct: 590 DNRKKELTNALHAQFKDWLYGNKRKSVLEMA 620


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,927,027
Number of Sequences: 37544
Number of extensions: 331761
Number of successful extensions: 810
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 809
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)