Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_G12
         (814 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    26   0.36 
DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.               24   1.5  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   4.4  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   7.8  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   7.8  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 26.2 bits (55), Expect = 0.36
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 9/42 (21%)
 Frame = -2

Query: 780 NFSHLSNHTLETNL---GVFLHCL------IKLYAAKSTTEN 682
           N SH  NH+ + NL   GV+++CL      + L+A K   +N
Sbjct: 573 NISHFINHSCDPNLAVYGVWINCLDPNLPKLALFATKDIKQN 614


>DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.
          Length = 132

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 577 SIRHLPRFGEDIRKK*RSSCK 639
           ++RHLPR  +D  KK  + CK
Sbjct: 80  ALRHLPRSMQDSTKKLFNKCK 100


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 554 HNDHIVDNLLDICHVLERTSEKNKEAVV 637
           H   ++++LLD  +VLER      E +V
Sbjct: 23  HEKRLLNDLLDTYNVLERPVGNESEPLV 50


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 34  NPQXXRIATWVRVLIIXCL 90
           +P   R+A WVRV+ I  L
Sbjct: 327 SPVTHRMARWVRVVFIQVL 345


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 7/27 (25%), Positives = 15/27 (55%)
 Frame = -2

Query: 384 KAFIFANFSLGTDEWT*QVVCIGILDF 304
           +A  F  F+  +D W+  +VC  ++ +
Sbjct: 808 EAIAFRKFTSASDVWSMGIVCWEVMSY 834


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,615
Number of Sequences: 438
Number of extensions: 3829
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25853301
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)