Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_G11
         (381 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0580 + 9615646-9616647                                           27   3.8  
02_02_0467 - 10620976-10621299                                         27   5.0  
12_02_0331 + 17648876-17649016,17650593-17650898                       26   8.7  
07_03_0352 + 17089666-17089982,17090326-17090410,17090674-17090913     26   8.7  

>03_02_0580 + 9615646-9616647
          Length = 333

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +2

Query: 2   GRPNGSLGRVSGRSKPSGSAGTSSAI 79
           G P G  GR+  RSKPS   GT++A+
Sbjct: 107 GAPAGHRGRI--RSKPSDGGGTAAAV 130


>02_02_0467 - 10620976-10621299
          Length = 107

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = -1

Query: 273 HNPEKHRNHLERWREIFFFLTNVISCRGQRRVSDGNSSSSR 151
           H P + R+  + W     F  +++  R Q+R S+ NS + +
Sbjct: 16  HPPTRCRSQAKVWFRRHCFFQSLVRARDQKRGSESNSGAEK 56


>12_02_0331 + 17648876-17649016,17650593-17650898
          Length = 148

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -1

Query: 276 MHNPEKHRNHLERWREIFFFLTNVISCRGQRRVSDGNSSSSRG 148
           +H  + H   +        FLT++ S  G+RR  D ++  SRG
Sbjct: 57  IHGADGHLTFMRTTATSRSFLTSMASGHGKRRWQDASNEVSRG 99


>07_03_0352 + 17089666-17089982,17090326-17090410,17090674-17090913
          Length = 213

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = -1

Query: 273 HNPEKHRNHLERWREIFFFLTNVISCRGQRRVSDGNSSSSR 151
           H P + R+  + W     F  +++  R Q+R S+ NS + +
Sbjct: 28  HPPIRCRSQAKVWFRRHCFFQSLVRARDQKRGSESNSGAEK 68


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,034,640
Number of Sequences: 37544
Number of extensions: 77444
Number of successful extensions: 251
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 251
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 251
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 624784784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)