Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_F_G10
(768 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0646 + 12606569-12606582,12608702-12608750,12609387-126095... 140 1e-33
05_05_0116 - 22496535-22496576,22496974-22497058,22497468-224975... 123 1e-28
01_06_1282 + 35972234-35972244,35972451-35972522,35972714-359727... 122 3e-28
10_06_0127 - 11027692-11027826,11027925-11027993,11029925-110300... 33 0.25
01_06_1691 - 39215192-39215283,39215341-39215413,39215874-392166... 31 1.3
07_03_0398 - 17690979-17690998,17691034-17691446,17691709-176917... 30 1.8
03_05_1021 - 29750155-29750220,29750342-29750428,29750614-297507... 29 4.1
03_01_0336 - 2659349-2659486,2659607-2659758,2660257-2660365,266... 29 5.4
09_02_0437 - 9399982-9401253 28 9.4
>02_02_0646 +
12606569-12606582,12608702-12608750,12609387-12609546,
12610372-12610519,12610610-12610687,12611935-12612019,
12612098-12612157
Length = 197
Score = 140 bits (338), Expect = 1e-33
Identities = 76/172 (44%), Positives = 103/172 (59%), Gaps = 6/172 (3%)
Frame = +2
Query: 191 VKGMCILDYEGNRILAKYYDKDVLPTTKEQKAFEKNLFNKTHRANA----EIIMLDGLTC 358
VK + +LD EG R+ KY+ D + + AFEK++F KT + NA EI + DG
Sbjct: 27 VKNILLLDSEGKRVAVKYFSDD-WSSNASKLAFEKSVFTKTLKTNARSEAEITLFDGYIV 85
Query: 359 VYKSNVDLFFYVMGSSHENELILQSVLNALYESVSLLLRRNMERRVLMENLDAVMLAFDE 538
VYK DL F+V ENELI+ +VL +SV LLLR ++E+R +ENLD ++L DE
Sbjct: 86 VYKFVQDLHFFVTAGDDENELIIANVLQGFSDSVGLLLRGDVEKRTALENLDLILLCIDE 145
Query: 539 ICDGGVILDADPTSIVSRAALRTED--VPLGEQTVAQVLQSAREQLKWSLLK 688
I DGG+IL+ D +I + A D P EQT++Q L +ARE L SLLK
Sbjct: 146 IVDGGIILETDANTIAGKVATNAVDGSAPFSEQTISQALATAREHLARSLLK 197
>05_05_0116 -
22496535-22496576,22496974-22497058,22497468-22497545,
22497656-22497803,22498612-22498771,22499056-22499058
Length = 171
Score = 123 bits (297), Expect = 1e-28
Identities = 62/140 (44%), Positives = 88/140 (62%), Gaps = 4/140 (2%)
Frame = +2
Query: 191 VKGMCILDYEGNRILAKYYDKDVLPTTKEQKAFEKNLFNKTHRANA----EIIMLDGLTC 358
VK + +LD EG R+ KYY D PT + AFEK++F KT +A A EI+M DG
Sbjct: 7 VKNILLLDSEGKRVAVKYYTDD-WPTLSAKLAFEKSVFVKTQKATAGAEAEIVMFDGHIV 65
Query: 359 VYKSNVDLFFYVMGSSHENELILQSVLNALYESVSLLLRRNMERRVLMENLDAVMLAFDE 538
VYK DL F+V G ENELIL SVL ++V ++LR N+++R +ENLD ++L DE
Sbjct: 66 VYKFIQDLHFFVTGGEEENELILASVLQGFTDAVDIILRNNVDKRTALENLDLILLCLDE 125
Query: 539 ICDGGVILDADPTSIVSRAA 598
I DGG++L+ + + I + +
Sbjct: 126 IVDGGIVLETEGSVIAEKVS 145
>01_06_1282 +
35972234-35972244,35972451-35972522,35972714-35972747,
35973247-35973360,35974833-35975036,35975290-35975449,
35976093-35976240,35976345-35976422,35976854-35976938,
35977142-35977213
Length = 325
Score = 122 bits (294), Expect = 3e-28
Identities = 61/140 (43%), Positives = 84/140 (60%), Gaps = 4/140 (2%)
Frame = +2
Query: 191 VKGMCILDYEGNRILAKYYDKDVLPTTKEQKAFEKNLFNKTH----RANAEIIMLDGLTC 358
VK + +LD EG R+ KYY D P+ ++AFEK++F KT R AEI+M D
Sbjct: 151 VKNILVLDSEGKRVAVKYYSDD-WPSLSSKQAFEKSVFAKTQKTSARTEAEIVMFDSYFV 209
Query: 359 VYKSNVDLFFYVMGSSHENELILQSVLNALYESVSLLLRRNMERRVLMENLDAVMLAFDE 538
VYK DL F+V G ENELIL SVL E++ LLR + RR +ENLD + L DE
Sbjct: 210 VYKFIQDLHFFVTGGDEENELILASVLQGFSEAIDYLLRNKVHRRAALENLDLIFLCLDE 269
Query: 539 ICDGGVILDADPTSIVSRAA 598
+ DGG++L+ D +I+ + +
Sbjct: 270 VVDGGIVLETDAKAILEKVS 289
>10_06_0127 -
11027692-11027826,11027925-11027993,11029925-11030011,
11030146-11030286
Length = 143
Score = 33.1 bits (72), Expect = 0.25
Identities = 29/136 (21%), Positives = 65/136 (47%), Gaps = 3/136 (2%)
Frame = +2
Query: 191 VKGMCILDYEGNRILAKYYDKDVLPTTKEQKAFEKNLFNKT-HRANAEIIMLD--GLTCV 361
++ + +++ +G +A+YY+ + E++A E + K R + + ++ V
Sbjct: 3 IRFVVMVNKQGQTRVAQYYEH---LSVDERRALEGEIVRKCLARTDHQCSFVEHRNYKVV 59
Query: 362 YKSNVDLFFYVMGSSHENELILQSVLNALYESVSLLLRRNMERRVLMENLDAVMLAFDEI 541
Y+ LFF V + ENEL + ++ L E++ N+ +M +L+ V +E+
Sbjct: 60 YRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHF-GNVCELDIMFHLEKVHFMLEEM 118
Query: 542 CDGGVILDADPTSIVS 589
G I++ +I++
Sbjct: 119 VMNGCIVETSKQNILA 134
>01_06_1691 -
39215192-39215283,39215341-39215413,39215874-39216615,
39216730-39217985,39218080-39218187,39218289-39218474,
39218625-39218675
Length = 835
Score = 30.7 bits (66), Expect = 1.3
Identities = 17/40 (42%), Positives = 25/40 (62%)
Frame = -3
Query: 541 DLIEGKHNSIQVLHKDSPLHVPSKQQTNRLVERIQY*LKD 422
D+ EG N + +LH+ + LH+ RLVE+I+Y LKD
Sbjct: 451 DMNEGYRNLLLMLHEKTNLHIQC-----RLVEQIRYLLKD 485
>07_03_0398 -
17690979-17690998,17691034-17691446,17691709-17691764,
17691922-17692054,17694244-17694403,17694862-17694955,
17695791-17695928,17696017-17696174,17696729-17696810,
17697055-17697151,17698703-17698824,17699833-17699910,
17700437-17700565,17701301-17701531
Length = 636
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +2
Query: 338 MLDGLTCVYKSNVDLFFYVMGSSHENELILQSVLN-ALYESVSLLLRRNMER 490
+LD C++ N+ F+V +S E +L+ ++N LY+ L R +E+
Sbjct: 108 LLDSFLCMW-FNIHTLFFVQLTSSETRKVLEHIINYVLYKMFQSLARERLEQ 158
>03_05_1021 -
29750155-29750220,29750342-29750428,29750614-29750799,
29750965-29751059,29751179-29751284,29751378-29751452,
29751548-29751679,29751782-29751961,29752371-29752567,
29752651-29752906
Length = 459
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +2
Query: 431 SVLNALYESVSLLLRRNMERRVLMENLDAVMLAFDEICD 547
++L E + L+ + M RR +EN++ +AF+ ICD
Sbjct: 306 TMLKGETEEIGKLVEKTMMRRFGVENVNDHFIAFNTICD 344
>03_01_0336 -
2659349-2659486,2659607-2659758,2660257-2660365,
2660459-2660563,2660874-2660957,2661072-2662745
Length = 753
Score = 28.7 bits (61), Expect = 5.4
Identities = 17/65 (26%), Positives = 28/65 (43%)
Frame = +2
Query: 407 HENELILQSVLNALYESVSLLLRRNMERRVLMENLDAVMLAFDEICDGGVILDADPTSIV 586
H++ ILQ + +RR+ + V+ N+D ++ DE DG D I+
Sbjct: 611 HDSHTILQHSKEHCLMGIKGTVRRSTDGHVIHANIDTDIIIADEPTDGSTKKPEDMYRII 670
Query: 587 SRAAL 601
AL
Sbjct: 671 EHFAL 675
>09_02_0437 - 9399982-9401253
Length = 423
Score = 27.9 bits (59), Expect = 9.4
Identities = 21/46 (45%), Positives = 26/46 (56%), Gaps = 6/46 (13%)
Frame = -1
Query: 600 SAARLTIDVGSAS------NITPPSQISSKASITASKFSIRTLRSM 481
SAA LTID GS S + PSQ SS S+ S+ S+ LRS+
Sbjct: 84 SAAALTIDAGSFSLAFLRDDDVLPSQWSSSWSVADSRGSLVLLRSL 129
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,762,175
Number of Sequences: 37544
Number of extensions: 433304
Number of successful extensions: 1224
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1218
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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