Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_G10
         (768 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z36949-2|CAA85416.1|  184|Caenorhabditis elegans Hypothetical pr...   208   3e-54
AF003130-2|AAB54125.2|  426|Caenorhabditis elegans Adaptin, mu/m...    43   2e-04
Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical pr...    28   8.4  
AL117203-22|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical...    28   8.4  
AF016440-4|AAB65902.1|  157|Caenorhabditis elegans Adaptin, smal...    28   8.4  

>Z36949-2|CAA85416.1|  184|Caenorhabditis elegans Hypothetical
           protein F59E10.3 protein.
          Length = 184

 Score =  208 bits (509), Expect = 3e-54
 Identities = 92/175 (52%), Positives = 139/175 (79%), Gaps = 5/175 (2%)
 Frame = +2

Query: 179 TLYIVKGMCILDYEGNRILAKYYDKDVLPTTKEQKAFEKNLFNKTHR-ANAEIIMLDGLT 355
           +LY +KG+ ILD +GNR+LAKYYD+    T KEQKAFEK+LF+KT R  +A+I++LDG+T
Sbjct: 10  SLYSIKGIVILDQDGNRVLAKYYDRTTFGTVKEQKAFEKSLFSKTSRNTSADILLLDGVT 69

Query: 356 CVYKSNVDLFFYVMGSSHENELILQSVLNALYESVSLLLRRNMERRVLMENLDAVMLAFD 535
           C+Y+SNVDL+FYV+GS+ ENEL L + L  LY++VS++LR+N+E++ L++++D +ML  D
Sbjct: 70  CLYRSNVDLYFYVLGSTRENELFLDATLTCLYDAVSVVLRKNVEKKALIDSMDTIMLIID 129

Query: 536 EICDGGVILDADPTSIVSRAALRTEDVPLGEQTVAQV----LQSAREQLKWSLLK 688
           EICD G+I++ D  ++V R AL++++V   +Q+V+Q+    ++SA EQ KWSLLK
Sbjct: 130 EICDEGIIMETDAQAVVQRTALKSDEVSFSDQSVSQIGFSFMKSANEQFKWSLLK 184


>AF003130-2|AAB54125.2|  426|Caenorhabditis elegans Adaptin,
           mu/medium chain (clathrinassociated complex) protein 1
           protein.
          Length = 426

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 30/124 (24%), Positives = 62/124 (50%), Gaps = 3/124 (2%)
 Frame = +2

Query: 191 VKGMCILDYEGNRILAKYYDKDVLPTTKEQKAFEKNLFNKTHRANAE-IIMLDGLTCVYK 367
           + G+ ILD +GN ++++ Y  DV  +  E+  F   L  K    +A  +++  G++  Y 
Sbjct: 3   ISGLFILDLKGNVVISRNYRGDVDMSCIEK--FMPLLVEKEDEGSASPVLVHQGISYTYI 60

Query: 368 SNVDLFFYVMGSSHENELILQSVLNALYESVSLLLR--RNMERRVLMENLDAVMLAFDEI 541
             ++++   +   + N ++   VL+ALY+ V +     + +E   + +N   +   FDE+
Sbjct: 61  KYMNVYLVTISKKNTNVIL---VLSALYKIVEVFCEYFKTLEEEAVRDNFVIIYELFDEM 117

Query: 542 CDGG 553
            D G
Sbjct: 118 LDFG 121


>Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical protein
            F15D4.7 protein.
          Length = 2268

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = -1

Query: 606  VRSAARLTI-DVGSASNITPPSQISSKASITASKFSIRTLRSMFLLSSKLTDS*SAF 439
            V S A L+I D GSA  I      +++ SIT    +I +  +++ LS K TDS S F
Sbjct: 863  VDSGANLSIIDHGSAQRIGLKILKTTQLSITGYSNTITSQSNIYHLSLKSTDSKSPF 919


>AL117203-22|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical
            protein F15D4.7 protein.
          Length = 2268

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = -1

Query: 606  VRSAARLTI-DVGSASNITPPSQISSKASITASKFSIRTLRSMFLLSSKLTDS*SAF 439
            V S A L+I D GSA  I      +++ SIT    +I +  +++ LS K TDS S F
Sbjct: 863  VDSGANLSIIDHGSAQRIGLKILKTTQLSITGYSNTITSQSNIYHLSLKSTDSKSPF 919


>AF016440-4|AAB65902.1|  157|Caenorhabditis elegans Adaptin, small
           chain (clathrinassociated complex) protein 1 protein.
          Length = 157

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 22/95 (23%), Positives = 38/95 (40%)
 Frame = +2

Query: 350 LTCVYKSNVDLFFYVMGSSHENELILQSVLNALYESVSLLLRRNMERRVLMENLDAVMLA 529
           L  VYK    L+F      ++NELI   V++   E +        E  ++  N +     
Sbjct: 55  LKVVYKRYASLYFCCAIEQNDNELITLEVIHRYVELLDKYFGSVCELDIIF-NFEKAYFI 113

Query: 530 FDEICDGGVILDADPTSIVSRAALRTEDVPLGEQT 634
            DE    G I +     ++   A+  +D+   E+T
Sbjct: 114 LDEFLLAGEIQETSKKQVLK--AIAAQDLIQEEET 146


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,115,713
Number of Sequences: 27780
Number of extensions: 391776
Number of successful extensions: 1001
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 999
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)