Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_G09
         (764 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    23   2.7  
DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11 pro...    22   6.2  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           21   8.2  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    21   8.2  

>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +3

Query: 462 AGMAYVGKYFDQAPYRVYCL 521
           AG+  +    DQ P+R YC+
Sbjct: 320 AGLGNLSVCIDQQPWRSYCI 339


>DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11
           protein.
          Length = 366

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +3

Query: 318 AWAEAGLFPLDELKNLRKLDSDLE 389
           +W E  L  L+ + NL+ ++ DL+
Sbjct: 74  SWNEIDLHGLENVANLKSVNPDLK 97


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -2

Query: 481 PTYAMPAATASPWPREPVPTSTKLSRG 401
           P    PA  ASP  +EP  ++T  + G
Sbjct: 87  PVAPEPAPLASPLVQEPGSSTTSATSG 113


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = -2

Query: 568 CSDSQMLPSAASPSPTRQYT 509
           C D+++L  A + SP+ ++T
Sbjct: 251 CRDNRLLVLAGTSSPSNRFT 270


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,112
Number of Sequences: 336
Number of extensions: 3234
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20546262
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)