Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_G05
         (825 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC806.02c |||Par A family ATPase iron cluster assembly protein...   132   4e-32
SPAC637.08 |||iron-sulfur cluster assembly ATPase Nbp35|Schizosa...   123   3e-29
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom...    30   0.35 
SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2 |Sch...    27   2.4  
SPBC216.06c |swi1||replication fork protection complex subunit S...    27   2.4  
SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces p...    27   4.3  
SPCC126.10 |iah1||isoamyl acetate hydrolytic enzyme Iah1 |Schizo...    26   7.5  
SPCC553.09c |spb70|pol12|DNA polymerase alpha B-subunit|Schizosa...    26   7.5  
SPBC14F5.01 ||SPBC1861.10|sequence orphan|Schizosaccharomyces po...    25   9.9  
SPAC3A11.04 |||siepin homolog|Schizosaccharomyces pombe|chr 1|||...    25   9.9  

>SPAC806.02c |||Par A family ATPase iron cluster assembly
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 608

 Score =  132 bits (320), Expect = 4e-32
 Identities = 63/110 (57%), Positives = 83/110 (75%), Gaps = 7/110 (6%)
 Frame = +1

Query: 202 QLALTLKE-----RGYKVGLLDIDLCGPSVPYIL--NLEGHDVHQSAEGWVPVYMDSEQR 360
           QLAL+L +     R  K G+LDIDL GPS+P +   + E + +HQS+ GWVPVY D  + 
Sbjct: 25  QLALSLHDSKVYSRPLKTGILDIDLTGPSIPRMFGKDAERNRIHQSSAGWVPVYTDETKE 84

Query: 361 LGVLSIGFLLTSRNDSVVLRGPKKTSIIKQFLEDVYWQELDFLVIDTPPG 510
           +G++S+GFLLTS+NDSVV RGPKK ++I+QF+ DV W ELDFL+IDTPPG
Sbjct: 85  IGLMSLGFLLTSKNDSVVWRGPKKAAMIRQFISDVSWGELDFLIIDTPPG 134


>SPAC637.08 |||iron-sulfur cluster assembly ATPase
           Nbp35|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 317

 Score =  123 bits (297), Expect = 3e-29
 Identities = 54/104 (51%), Positives = 77/104 (74%), Gaps = 1/104 (0%)
 Frame = +1

Query: 202 QLALTLK-ERGYKVGLLDIDLCGPSVPYILNLEGHDVHQSAEGWVPVYMDSEQRLGVLSI 378
           QLA  L  E   ++GL+D+D+CGPS+P I+ +E  + HQS++GW P+Y+     L V+SI
Sbjct: 80  QLAWGLSLEEDKQIGLMDVDICGPSIPRIMGVEKEEAHQSSKGWSPIYVCPN--LAVMSI 137

Query: 379 GFLLTSRNDSVVLRGPKKTSIIKQFLEDVYWQELDFLVIDTPPG 510
           GFLL S + SV+ RGPKK  +IKQF++DV W+ LD+L++DTPPG
Sbjct: 138 GFLLPSEDSSVIWRGPKKNGLIKQFIKDVNWENLDYLIVDTPPG 181


>SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1466

 Score = 30.3 bits (65), Expect = 0.35
 Identities = 10/38 (26%), Positives = 23/38 (60%)
 Frame = +3

Query: 372  INWIPTNIS**FCCIKGTKKDFHNQTVPRRCLLARARL 485
            + W+PT+IS    C++G    F+ +++ ++C +  + L
Sbjct: 1228 VRWVPTDISGKPLCLRGRISSFYRKSIHKKCRVGSSLL 1265


>SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 681

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +2

Query: 647 KHNKFYVQSFGKNATSLFETKMHNSNYYNLFYIXTV 754
           +  ++  ++F K+ TS   T   +S+Y  LFY+ T+
Sbjct: 251 QQRQYLTETFVKDCTSSILTASSDSSYILLFYVSTI 286


>SPBC216.06c |swi1||replication fork protection complex subunit
           Swi1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 971

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
 Frame = +2

Query: 590 DQFYRNDKKNIKIKSTFDNK----HNKFYVQSFGKNATSLFETKMHNSNYYNLFYIXTVI 757
           ++ Y ND       S FD +    HN+  V+SF     S F+  M +     LF + ++ 
Sbjct: 392 EEIYSNDYSFGLAASVFDQRALIMHNRLMVESFEMKQWSTFQASMLSMTQL-LFTLRSMT 450

Query: 758 ILFTTNEYFVXLRDTIL*NI 817
           +   ++E +  + D +L NI
Sbjct: 451 L--CSSEIYQRIADNLLSNI 468


>SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 464

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +2

Query: 584 ILDQFYRNDKKNIKIKSTFDNKHNKFYVQSFGKNATSLFETK 709
           ++ + YR  + N+++  T    H+K Y  +  K  T+L E K
Sbjct: 404 VMKEKYREKENNLELLETNLKTHHKDYKHALKKRITALEEEK 445


>SPCC126.10 |iah1||isoamyl acetate hydrolytic enzyme Iah1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 246

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = +3

Query: 513 IIQINHLYYDKTRKFQTYLKYTTI-YSISFIEMIKKISK*NPLLITNIISFMFNHLVKML 689
           + +I   Y      F   L ++++ YS+ F E++  ISK  P L+ N +   F H  ++L
Sbjct: 185 LYEITKSYPTPELLFTDGLHFSSLGYSLLFNEIVATISKAWPELLPNNLPLQFPHWSEIL 244


>SPCC553.09c |spb70|pol12|DNA polymerase alpha
           B-subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
 Frame = -3

Query: 361 ASVRCPCKLVPNLQRSGGHHGL--RDSKCKVRLG-HINLCLINQPCNLFLSELV 209
           + + CPC L+P++  +   H    +D+  +V LG   N      PC   ++++V
Sbjct: 379 SQLTCPCILIPHINDAASDHPAWPQDAFNRVALGLPSNFKCFPNPCMFSINDVV 432


>SPBC14F5.01 ||SPBC1861.10|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 278

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 17/50 (34%), Positives = 27/50 (54%)
 Frame = +3

Query: 129 VXSSKTRAISAFRQRWRR*INSEHAVGTNSERKRLQGWFIRHRFMWPKRT 278
           V S+  R  S ++ RW+R INSE       E++  + W I+H++  P  T
Sbjct: 218 VTSNIQRLTSLYQTRWKR-INSE-------EKRNWEEW-IKHKYKIPNDT 258


>SPAC3A11.04 |||siepin homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 236

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 10/41 (24%), Positives = 22/41 (53%)
 Frame = +2

Query: 686 ATSLFETKMHNSNYYNLFYIXTVIILFTTNEYFVXLRDTIL 808
           AT  F +K+H   ++   +  +  ++FT+  +F  +  TI+
Sbjct: 180 ATLAFASKLHGMRWFMYTHKVSAFLVFTSLFWFTGITSTII 220


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,081,709
Number of Sequences: 5004
Number of extensions: 62971
Number of successful extensions: 148
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)