Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_F_G05
(825 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0299 - 24243364-24244259,24244417-24244428,24245092-242451... 137 1e-32
02_04_0505 - 23534273-23535171,23536545-23536646,23536776-23536842 135 3e-32
03_05_0387 + 23708447-23708470,23708616-23708739,23709081-237092... 64 1e-10
01_06_0521 + 30001662-30001752,30001883-30001999,30002099-300022... 62 4e-10
05_04_0086 - 17797792-17797810,17798049-17798234,17798319-177984... 31 1.1
01_05_0387 - 21695277-21695351,21696186-21696228,21696325-216964... 30 1.9
01_01_0430 + 3258438-3259200,3259929-3261454 29 3.4
03_05_0896 - 28592658-28593331,28594069-28595455 29 5.9
03_06_0210 + 32386438-32386452,32386543-32386617,32386716-323868... 28 7.8
>04_04_0299 -
24243364-24244259,24244417-24244428,24245092-24245193,
24245298-24245340
Length = 350
Score = 137 bits (331), Expect = 1e-32
Identities = 60/103 (58%), Positives = 81/103 (78%)
Frame = +1
Query: 202 QLALTLKERGYKVGLLDIDLCGPSVPYILNLEGHDVHQSAEGWVPVYMDSEQRLGVLSIG 381
QL+ L E ++VGLLDID+CGPS+P +L LEG D+HQS GW PVY++S LGV+SIG
Sbjct: 85 QLSFALAEMDHQVGLLDIDICGPSIPKMLGLEGQDIHQSNLGWSPVYVESN--LGVMSIG 142
Query: 382 FLLTSRNDSVVLRGPKKTSIIKQFLEDVYWQELDFLVIDTPPG 510
F+L + +D+V+ RGP+K +IKQFL+DV W E+D+LV+D PPG
Sbjct: 143 FMLPNPDDAVIWRGPRKNGLIKQFLKDVDWGEIDYLVVDAPPG 185
>02_04_0505 - 23534273-23535171,23536545-23536646,23536776-23536842
Length = 355
Score = 135 bits (327), Expect = 3e-32
Identities = 60/103 (58%), Positives = 80/103 (77%)
Frame = +1
Query: 202 QLALTLKERGYKVGLLDIDLCGPSVPYILNLEGHDVHQSAEGWVPVYMDSEQRLGVLSIG 381
QL+ L E +VGLLDID+CGPS+P +L LEG D+HQS GW PVY++S LGV+SIG
Sbjct: 89 QLSFALAEMDCQVGLLDIDICGPSIPKMLGLEGQDIHQSNLGWSPVYVESN--LGVMSIG 146
Query: 382 FLLTSRNDSVVLRGPKKTSIIKQFLEDVYWQELDFLVIDTPPG 510
F+L + +D+V+ RGP+K +IKQFL+DV W E+D+LV+D PPG
Sbjct: 147 FMLPNPDDAVIWRGPRKNGLIKQFLKDVDWGEIDYLVVDAPPG 189
>03_05_0387 +
23708447-23708470,23708616-23708739,23709081-23709203,
23710723-23710820,23711778-23711918,23712236-23712361,
23713316-23713486
Length = 268
Score = 64.1 bits (149), Expect = 1e-10
Identities = 35/92 (38%), Positives = 50/92 (54%)
Frame = +1
Query: 235 KVGLLDIDLCGPSVPYILNLEGHDVHQSAEGWVPVYMDSEQRLGVLSIGFLLTSRNDSVV 414
KVGLLD D+ GPS+P ++NL +PV + +SIGFL+ ++ +V
Sbjct: 63 KVGLLDADIYGPSIPTMMNLHAKPEVSEDMRMIPV---DNYGVQCMSIGFLV-DKDAPIV 118
Query: 415 LRGPKKTSIIKQFLEDVYWQELDFLVIDTPPG 510
RGP S +++ V W LD LV+D PPG
Sbjct: 119 WRGPMVMSALEKITRGVAWGNLDILVVDMPPG 150
>01_06_0521 +
30001662-30001752,30001883-30001999,30002099-30002229,
30002320-30002370,30002639-30002689,30002864-30003007,
30003082-30003224,30003376-30003448,30003540-30003635,
30003737-30003835,30003905-30003958,30004032-30004155,
30004420-30004544,30004720-30004842,30004948-30005028
Length = 500
Score = 62.5 bits (145), Expect = 4e-10
Identities = 37/102 (36%), Positives = 56/102 (54%)
Frame = +1
Query: 205 LALTLKERGYKVGLLDIDLCGPSVPYILNLEGHDVHQSAEGWVPVYMDSEQRLGVLSIGF 384
LA TL G +VG+ D D+ GPS+P +++ E + + E + +E LGV + F
Sbjct: 159 LAYTLAGMGARVGIFDADVFGPSLPTMVSPENRLLVMNPES--RSILPTEY-LGVKMVSF 215
Query: 385 LLTSRNDSVVLRGPKKTSIIKQFLEDVYWQELDFLVIDTPPG 510
+ ++ +RGP + +I Q L W ELD+LVID PPG
Sbjct: 216 GFAGQGRAI-MRGPMVSGVINQLLTTTDWGELDYLVIDMPPG 256
>05_04_0086 -
17797792-17797810,17798049-17798234,17798319-17798407,
17798518-17798712,17799364-17799525,17799609-17799681,
17799929-17799996,17800086-17800133,17800223-17800288,
17800418-17800488,17800825-17800891
Length = 347
Score = 31.1 bits (67), Expect = 1.1
Identities = 14/36 (38%), Positives = 24/36 (66%)
Frame = +1
Query: 409 VVLRGPKKTSIIKQFLEDVYWQELDFLVIDTPPGKL 516
VV RG ++TSI + ++ED++W++LD P K+
Sbjct: 98 VVFRGTQETSI-QNWIEDLFWKQLDLDYPGMPQAKV 132
>01_05_0387 -
21695277-21695351,21696186-21696228,21696325-21696454,
21696812-21697028,21697202-21697248,21698132-21698228,
21698637-21698687,21698788-21698919,21699345-21699499,
21700461-21700534,21700566-21700730,21701368-21701420
Length = 412
Score = 30.3 bits (65), Expect = 1.9
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +1
Query: 400 NDSVVLRGPKKTSIIKQFLEDVYWQELDFL-VIDTPPGKLSK 522
ND+ P ++ + DVY E+D L V+D PPGK+ +
Sbjct: 316 NDNKYADWPPLPTVPDEIEPDVYVPEVDILSVLDVPPGKMGR 357
>01_01_0430 + 3258438-3259200,3259929-3261454
Length = 762
Score = 29.5 bits (63), Expect = 3.4
Identities = 17/36 (47%), Positives = 21/36 (58%)
Frame = +1
Query: 322 EGWVPVYMDSEQRLGVLSIGFLLTSRNDSVVLRGPK 429
EGW ++S + VLS+ F S NDSVV R PK
Sbjct: 230 EGWCNALVNSTPKDQVLSLPFCKISVNDSVV-RSPK 264
>03_05_0896 - 28592658-28593331,28594069-28595455
Length = 686
Score = 28.7 bits (61), Expect = 5.9
Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Frame = +3
Query: 246 IRHRFMWPKRTLHFESXXXXXXXXXXXLGTS---LHGQRTEARCPINW 380
++H F+ P R ++ +G+ LHG R R P+NW
Sbjct: 427 LQHEFIVPLRAYYYSKDEKLLVYDFMPMGSLSAVLHGNRGSGRTPLNW 474
>03_06_0210 +
32386438-32386452,32386543-32386617,32386716-32386832,
32387006-32387076,32387202-32387496,32387594-32387883,
32388122-32388137
Length = 292
Score = 28.3 bits (60), Expect = 7.8
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +2
Query: 578 YYILDQFYRNDKKNIKIKSTFDNKHNKFYVQS 673
YY LD FY+N ++ +K +S ++ + Y S
Sbjct: 81 YYELDNFYQNHRRYVKSRSDKQLRYGQKYTHS 112
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,096,696
Number of Sequences: 37544
Number of extensions: 339681
Number of successful extensions: 636
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 632
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2268190812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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