Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_G05
         (825 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z80216-6|CAB02285.2|  313|Caenorhabditis elegans Hypothetical pr...   109   2e-24
U41994-2|AAO38634.1|  154|Caenorhabditis elegans Rnase h protein...    29   3.1  
U41994-1|AAO91711.1|  155|Caenorhabditis elegans Rnase h protein...    29   3.1  
AL117204-16|CAB55130.1|  389|Caenorhabditis elegans Hypothetical...    29   4.0  
Z75955-16|CAN86627.1|  483|Caenorhabditis elegans Hypothetical p...    28   7.1  
Z75955-15|CAB00117.2|  484|Caenorhabditis elegans Hypothetical p...    28   7.1  

>Z80216-6|CAB02285.2|  313|Caenorhabditis elegans Hypothetical
           protein F10G8.6 protein.
          Length = 313

 Score =  109 bits (262), Expect = 2e-24
 Identities = 47/92 (51%), Positives = 69/92 (75%)
 Frame = +1

Query: 235 KVGLLDIDLCGPSVPYILNLEGHDVHQSAEGWVPVYMDSEQRLGVLSIGFLLTSRNDSVV 414
           +V +LD+D+CGPS P ++ +E  +VH SA+GW PV +  +  L ++SI FLL  +ND+V+
Sbjct: 90  QVAILDVDICGPSQPRMMGVEDEEVHNSADGWTPVGI--QPNLTLMSIAFLLGDKNDAVI 147

Query: 415 LRGPKKTSIIKQFLEDVYWQELDFLVIDTPPG 510
            RG +K  +IKQFL+DV W E+D+L+IDTPPG
Sbjct: 148 WRGARKNGMIKQFLKDVDWGEVDYLLIDTPPG 179


>U41994-2|AAO38634.1|  154|Caenorhabditis elegans Rnase h protein
           1.0, isoform b protein.
          Length = 154

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
 Frame = +2

Query: 593 QFYRNDKKNIKIKSTF-DNKHNKFYVQSFGKNA---TSLFETKMHNSNY 727
           Q Y +D+K  K++STF ++ H+ +Y  + G +    T+  E K H  NY
Sbjct: 44  QKYVDDRKPKKVESTFPESTHDTYYAVARGHSVGVFTNYNEVKEHIKNY 92


>U41994-1|AAO91711.1|  155|Caenorhabditis elegans Rnase h protein
           1.0, isoform a protein.
          Length = 155

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
 Frame = +2

Query: 593 QFYRNDKKNIKIKSTF-DNKHNKFYVQSFGKNA---TSLFETKMHNSNY 727
           Q Y +D+K  K++STF ++ H+ +Y  + G +    T+  E K H  NY
Sbjct: 44  QKYVDDRKPKKVESTFPESTHDTYYAVARGHSVGVFTNYNEVKEHIKNY 92


>AL117204-16|CAB55130.1|  389|Caenorhabditis elegans Hypothetical
           protein Y116A8C.25 protein.
          Length = 389

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 638 FDNKHNKFYVQSFGKNATSLFETKMHNSNYYNLF 739
           F+NK+ K    + GKN   L     HN N++N F
Sbjct: 257 FENKYEKIIKTADGKNQRVLLYELYHNLNHWNHF 290


>Z75955-16|CAN86627.1|  483|Caenorhabditis elegans Hypothetical
           protein R07B7.9b protein.
          Length = 483

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 17/55 (30%), Positives = 23/55 (41%)
 Frame = +2

Query: 599 YRNDKKNIKIKSTFDNKHNKFYVQSFGKNATSLFETKMHNSNYYNLFYIXTVIIL 763
           YRN    I+ +  FD++     VQ FG   T  F  +    NY +  Y   V  L
Sbjct: 377 YRNASYEIQNEGKFDDREFTVVVQPFGTEYTDAFRNEF--GNYSSALYAYDVFHL 429


>Z75955-15|CAB00117.2|  484|Caenorhabditis elegans Hypothetical
           protein R07B7.9a protein.
          Length = 484

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 17/55 (30%), Positives = 23/55 (41%)
 Frame = +2

Query: 599 YRNDKKNIKIKSTFDNKHNKFYVQSFGKNATSLFETKMHNSNYYNLFYIXTVIIL 763
           YRN    I+ +  FD++     VQ FG   T  F  +    NY +  Y   V  L
Sbjct: 378 YRNASYEIQNEGKFDDREFTVVVQPFGTEYTDAFRNEF--GNYSSALYAYDVFHL 430


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,745,928
Number of Sequences: 27780
Number of extensions: 338357
Number of successful extensions: 766
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 765
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2040452812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)