Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_F_G04
(773 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0570 - 4231100-4232560 30 1.8
04_01_0464 + 6006021-6006082,6006249-6006519 29 3.1
01_01_0073 + 555485-556315 29 4.1
02_05_0059 - 25482207-25482271,25482432-25482651 29 5.4
08_01_0229 + 1834102-1834358,1834442-1834901 28 7.2
06_01_0962 - 7407829-7408025,7408219-7408279 28 7.2
03_06_0218 - 32442904-32443347,32444426-32444626,32446584-32447156 28 7.2
09_02_0362 + 7860088-7860197,7861606-7861636,7861738-7861801,786... 28 9.5
06_02_0055 + 10986228-10986388,10986717-10986899,10987013-10987652 28 9.5
05_01_0214 - 1615519-1616775 28 9.5
04_01_0352 - 4619946-4619984,4620062-4620133,4621515-4621880,462... 28 9.5
02_02_0369 - 9505330-9505652,9507262-9507532,9507649-9507690,950... 28 9.5
>01_01_0570 - 4231100-4232560
Length = 486
Score = 30.3 bits (65), Expect = 1.8
Identities = 21/58 (36%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = -3
Query: 663 GGMGLGQRLRDHSLAGGSGV-RGMSEHWSAITCVSSGITSVGDNGSGAIRSVGDHGGG 493
GG+G G L + GGSG G + A V GI G G GA +G GG
Sbjct: 205 GGVGGGGELGGGGMGGGSGFGGGAGGGFGAGGGVGGGIGVGGGMGGGASGGIGGGAGG 262
>04_01_0464 + 6006021-6006082,6006249-6006519
Length = 110
Score = 29.5 bits (63), Expect = 3.1
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -3
Query: 552 TSVGDNGSGAIRSVGDHGGGYVTNQ 478
+ VG +G G+ R GDHG G T Q
Sbjct: 40 SGVGGDGDGSERGTGDHGAGSGTEQ 64
>01_01_0073 + 555485-556315
Length = 276
Score = 29.1 bits (62), Expect = 4.1
Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Frame = -3
Query: 666 LGGMGL-GQRLRDHSLAGGSGVRGMSEHWSAITCVSSGITSVGDNGSGAIRSVGDHGGG 493
L G GL G D ++ G GV G C + G++ G G +S GD GGG
Sbjct: 85 LAGEGLVGLPEGDGAIGGAHGVLGDLRCGGGGDCTTGGVSERA-GGLGGGKSAGDDGGG 142
>02_05_0059 - 25482207-25482271,25482432-25482651
Length = 94
Score = 28.7 bits (61), Expect = 5.4
Identities = 19/61 (31%), Positives = 30/61 (49%)
Frame = -3
Query: 675 RRDLGGMGLGQRLRDHSLAGGSGVRGMSEHWSAITCVSSGITSVGDNGSGAIRSVGDHGG 496
RR GG GQ++ D GG ++G + S G ++ G G G++ G++GG
Sbjct: 19 RRRRGG---GQQVND---GGGGSMKGGGDSGSLARGGDGGGSTWGGGGGGSVGRGGNNGG 72
Query: 495 G 493
G
Sbjct: 73 G 73
>08_01_0229 + 1834102-1834358,1834442-1834901
Length = 238
Score = 28.3 bits (60), Expect = 7.2
Identities = 16/54 (29%), Positives = 23/54 (42%)
Frame = -3
Query: 666 LGGMGLGQRLRDHSLAGGSGVRGMSEHWSAITCVSSGITSVGDNGSGAIRSVGD 505
L G + +R D L G G +S T + + VGD G+G VG+
Sbjct: 85 LRGRAVAERRDDDGLKWGGGEDAVSATRWGRTAMGDAVEEVGDGGTGVDGVVGE 138
>06_01_0962 - 7407829-7408025,7408219-7408279
Length = 85
Score = 28.3 bits (60), Expect = 7.2
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = -3
Query: 666 LGGMGLGQRLRDHSLAGGSG-VRGMSEHWSAITCVSSGITSVG 541
+GGM G +++GG G V G S + S+I CV G SVG
Sbjct: 36 IGGMRGGIAGVRGNVSGGRGDVNGHSHNISSIICVGGGRDSVG 78
>03_06_0218 - 32442904-32443347,32444426-32444626,32446584-32447156
Length = 405
Score = 28.3 bits (60), Expect = 7.2
Identities = 20/57 (35%), Positives = 22/57 (38%)
Frame = -3
Query: 660 GMGLGQRLRDHSLAGGSGVRGMSEHWSAITCVSSGITSVGDNGSGAIRSVGDHGGGY 490
G G G + G G S HW A C S + G G GA G GGGY
Sbjct: 96 GSGSGSGGAQVARGGACFKCGDSCHW-ARECPQSVPATGGGGGGGAFGGSGGGGGGY 151
>09_02_0362 +
7860088-7860197,7861606-7861636,7861738-7861801,
7861922-7862052,7863575-7863784,7863891-7863956,
7864868-7865075,7866270-7866325,7866406-7867128,
7868246-7868299,7868667-7868695,7869501-7869585,
7870032-7870202,7870246-7870827
Length = 839
Score = 27.9 bits (59), Expect = 9.5
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Frame = -3
Query: 645 QRLRDHSLAGGSGVRGMSEHWSAITCVSSGITSVGDNGSGAIRSVGDHGGGYVTNQLLGE 466
Q +R A S + +S+H S T +S G+ + +G+G +S+G V N G
Sbjct: 354 QSIRPGGPANVSILNNLSQHRSVATIISGGMPGIPMSGTG--QSIGSQ--QVVQNTAFGS 409
Query: 465 NXXXXXXGTVQL--SLNGLDS 409
N + + SL G+ S
Sbjct: 410 NTPITGNSNIAVSSSLGGIQS 430
>06_02_0055 + 10986228-10986388,10986717-10986899,10987013-10987652
Length = 327
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = -3
Query: 636 RDHSLAGGSGVRGMSEHWSAITCVSSGITSV 544
+ +S AG S + M+ H SAI V S +TSV
Sbjct: 78 QQNSGAGFSSTKRMTSHMSAIVVVKSTVTSV 108
>05_01_0214 - 1615519-1616775
Length = 418
Score = 27.9 bits (59), Expect = 9.5
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 697 GLDYAHGLDYGHGLXYAHGLPHG 765
G D+ HG +GHG ++H HG
Sbjct: 181 GHDHGHGHGHGHGHGHSHDHDHG 203
>04_01_0352 -
4619946-4619984,4620062-4620133,4621515-4621880,
4622240-4622713
Length = 316
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = -3
Query: 678 QRRDLGGMGLGQRLRDHSLAGGSGVRGMSEHWSAITCVSSGIT 550
+ R + G G LR AGG GVR + H + + C SG T
Sbjct: 195 EERAVAG-GAVAELRPGGRAGGGGVRVRARHRAGVPCPLSGQT 236
>02_02_0369 -
9505330-9505652,9507262-9507532,9507649-9507690,
9508416-9508458,9508853-9508860
Length = 228
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +2
Query: 497 PPWSPTLRMAPLPLSPTLVMP 559
PP S ++MAPLP PTL P
Sbjct: 148 PPGSMPMQMAPLPRPPTLPPP 168
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.315 0.129 0.386
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,162,847
Number of Sequences: 37544
Number of extensions: 152002
Number of successful extensions: 910
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 891
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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