Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_G03
         (862 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    23   2.3  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    23   2.3  
AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory recept...    22   5.4  
AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory recept...    22   5.4  
DQ855506-1|ABH88193.1|  124|Tribolium castaneum chemosensory pro...    21   9.5  
AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical pro...    21   9.5  

>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +2

Query: 560 TGDEVIIIEPYFDCYDFMV 616
           T D V +I  YF+C  FMV
Sbjct: 267 TSDAVPLIGTYFNCIMFMV 285


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +2

Query: 560 TGDEVIIIEPYFDCYDFMV 616
           T D V +I  YF+C  FMV
Sbjct: 267 TSDAVPLIGTYFNCIMFMV 285


>AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory receptor
           candidate 13 protein.
          Length = 390

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 482 IDAFNEILVTSGAYEALYSTIL 547
           IDAFN+I   S     LYS++L
Sbjct: 271 IDAFNDIFGWSFLLFTLYSSLL 292


>AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory receptor
           candidate 12 protein.
          Length = 316

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 482 IDAFNEILVTSGAYEALYSTIL 547
           IDAFN+I   S     LYS++L
Sbjct: 197 IDAFNDIFGWSFLLFTLYSSLL 218


>DQ855506-1|ABH88193.1|  124|Tribolium castaneum chemosensory
           protein 20 protein.
          Length = 124

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -3

Query: 842 KARCAXCTDRQ 810
           K  CA CTD+Q
Sbjct: 71  KTSCAKCTDKQ 81


>AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical
           protein protein.
          Length = 205

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -2

Query: 231 NRNFSAIVRQTLNCRIK 181
           + NF+  +RQ   CR K
Sbjct: 164 DNNFNVFLRQVFTCRCK 180


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,390
Number of Sequences: 336
Number of extensions: 4319
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23866870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)