Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_G03
         (862 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy...   165   7e-42
SPBC582.08 |||alanine aminotransferase |Schizosaccharomyces pomb...    37   0.003
SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protei...    29   0.64 
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce...    29   0.64 
SPAC56E4.03 |||aromatic aminotransferase |Schizosaccharomyces po...    28   1.5  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    27   3.4  
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|...    26   6.0  
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe...    26   6.0  
SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomy...    26   7.9  

>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 421

 Score =  165 bits (401), Expect = 7e-42
 Identities = 87/215 (40%), Positives = 126/215 (58%), Gaps = 3/215 (1%)
 Frame = +2

Query: 227 RLPERYGAGEKSVWVEYIQLAAEYK-PAVNLGQGFPDYHAPKHVTEALSQIATSENPLLH 403
           R   +  A    VW    Q  AE K P V+L QGF +Y+ PK V +A  +  + +    +
Sbjct: 7   RPSNKVAASRPDVWTLVNQATAECKVPPVSLSQGFFNYNPPKFVLDAAKK--SIDEVACN 64

Query: 404 QYTRGFGLPRLVENLSKVYSPLIGRQIDAFNEILVTSGAYEALYSTILGHVDTGDEVIII 583
           QY+   G P L + LS+ YSP   R ++   EI+VT+GA E  +S     ++ GDEVI++
Sbjct: 65  QYSHTRGRPSLRKALSEAYSPYFKRTLNPDTEIVVTAGANEGFFSVFAAFLNPGDEVIVM 124

Query: 584 EPYFDCYDFMVKCAGGVPRFIALKPKPQGD--DISSADWVLXEAELASLFNNRTKMIIVN 757
           EP+FD Y   +   GGVP ++ + P  +G    +S+  W L   +L +    +TKMI++N
Sbjct: 125 EPFFDQYISNITMNGGVPVYVPIIPPEEGSVKPVSAGAWKLDMNKLRNAITEKTKMIVIN 184

Query: 758 TPHNPLGKVFTQRELELIADLCXKHNVLCLSDEVY 862
           TPHNPLGK+F++ EL  IADL  KHN+L +SDEVY
Sbjct: 185 TPHNPLGKIFSEEELNEIADLVLKHNLLVVSDEVY 219


>SPBC582.08 |||alanine aminotransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 505

 Score = 37.1 bits (82), Expect = 0.003
 Identities = 37/167 (22%), Positives = 69/167 (41%), Gaps = 2/167 (1%)
 Frame = +2

Query: 368 SQIATSENPLLHQYTRGFGLPRLVENLSKVYSPLIGRQIDAFNEILVTSGAYEA--LYST 541
           S++   E+  L  Y+   G+P +  +++       G   +  ++I +TSGA  A  L  T
Sbjct: 123 SKMLLKESGSLGAYSASQGIPLVRRHVADFIRARDGFDCEP-SDIYLTSGASHAARLIMT 181

Query: 542 ILGHVDTGDEVIIIEPYFDCYDFMVKCAGGVPRFIALKPKPQGDDISSADWVLXEAELAS 721
           ++    T D V++  P +  Y   +    G     +L  +   D     D      + AS
Sbjct: 182 LIIARPT-DGVMVPAPQYPLYGAQIDLMSGSMVSYSLSEENNWD--IDFDQFKKSFDEAS 238

Query: 722 LFNNRTKMIIVNTPHNPLGKVFTQRELELIADLCXKHNVLCLSDEVY 862
                 ++ +V  P NP G   ++  +E +        ++ L+DEVY
Sbjct: 239 KKGINVRLCVVINPGNPTGACISENSMEKVLRFAKAKGIVLLADEVY 285


>SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protein
           Sec23a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 29.5 bits (63), Expect = 0.64
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +2

Query: 491 FNEILVTSGAYEALYSTILGHVDTGDEVIIIEPYFDCYDFMVKCAGGVPRFI-ALKPKP 664
           F ++   S    A Y  +L H D  + +I+I+P    + F  +  GGVP  + A+  KP
Sbjct: 583 FLQVFNNSPDETAFYRHMLNHEDVNNSLIMIQPTLQSFSF--EHPGGVPVLLDAVSVKP 639


>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1210

 Score = 29.5 bits (63), Expect = 0.64
 Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = +2

Query: 335 YHAPKHVTEALSQIATSENP-LLHQYTRGFGLPRLVENLSKVYSPLIGRQ 481
           Y  P  +T+ L  I +SEN  L+HQ  R  GLP+ +E    +Y+P   RQ
Sbjct: 604 YWDPFMITD-LKFIGSSENAELIHQRLRN-GLPKSIEKGPFIYNPFNRRQ 651


>SPAC56E4.03 |||aromatic aminotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +2

Query: 752 VNTPHNPLGKVFTQRELELIADLCXKHNVLCLSDEVY 862
           + T  NP G   +    + I  L  KH+++ L DE Y
Sbjct: 212 IPTGQNPTGSTLSVERRKQIYTLAQKHDIIILEDEPY 248


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 3655

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +2

Query: 395 LLHQYTRGFGLPRLVENLSKVYSPLIGRQIDAFNEILVTS 514
           LL    RG G  R  E+L K   PL+   ++AFN +L+++
Sbjct: 720 LLRALFRGIGGGRF-ESLYKEVMPLLHALLEAFNSLLISA 758


>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
           Abc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1469

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = +2

Query: 674 DISSADWVLXEAELASLFNNRTKMIIVNTPH 766
           DI +++W+      +SL  NRT +++ +  H
Sbjct: 771 DIHTSNWIYKHCFQSSLMENRTVILVTHNVH 801


>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 959

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
 Frame = +2

Query: 434 LVENLSKVYSPL--IGRQIDAFNEILVTSGAYEALYSTILGHVDTG--DEVIIIEPYFDC 601
           ++E + K  S L  + ++ID   + L    A++ LYS +L  V  G  D + ++E   +C
Sbjct: 536 VIEIVQKSLSVLHKVTKKIDKKAQHLQQLNAFQLLYSLVLLQVYAGDTDSIDVLEDIDNC 595

Query: 602 Y 604
           Y
Sbjct: 596 Y 596


>SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 274

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +2

Query: 431 RLVENLSKVYSPLIGRQIDAFNEILVTSGAYEALYSTILGHVDTGDE 571
           R++ N++K +   I   +D FNE+       + L +   GHVD  DE
Sbjct: 74  RVLRNVNKKFEGDIKNCLDGFNELNDPIVQEKILRAFEQGHVDEEDE 120


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,417,221
Number of Sequences: 5004
Number of extensions: 69446
Number of successful extensions: 189
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)