Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_G02
         (784 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB097148-2|BAC82628.1| 1077|Anopheles gambiae pol-like protein p...    25   2.0  
AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcript...    25   2.0  
AB090818-2|BAC57912.1|  988|Anopheles gambiae reverse transcript...    25   3.5  

>AB097148-2|BAC82628.1| 1077|Anopheles gambiae pol-like protein
            protein.
          Length = 1077

 Score = 25.4 bits (53), Expect = 2.0
 Identities = 11/43 (25%), Positives = 24/43 (55%)
 Frame = -3

Query: 686  HLACNDSLSALAGVFNSPPIISPVSTNLYQEPPAVSTTSKVLR 558
            H++C  +   +A V ++ P +  V   L  +PP+ + T++ +R
Sbjct: 877  HISCAGNPPNIAAVSSTYPCLRIVIQQLGYQPPSATITTRWIR 919


>AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1201

 Score = 25.4 bits (53), Expect = 2.0
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +1

Query: 685 WISSLXEITLRANDIIHLIEK 747
           W+  + EITL+A  I+H + +
Sbjct: 819 WVPHVKEITLKATRIVHAVNR 839


>AB090818-2|BAC57912.1|  988|Anopheles gambiae reverse transcriptase
           protein.
          Length = 988

 Score = 24.6 bits (51), Expect = 3.5
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 379 VTYVVACVIINEFNEVLMMQE 441
           V+Y  ACV+ N    VL+MQE
Sbjct: 822 VSYDAACVVANTTPLVLLMQE 842


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 687,272
Number of Sequences: 2352
Number of extensions: 13649
Number of successful extensions: 20
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 81913191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)