Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_G01
         (776 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.10c |stg1||SM22/transgelin-like actin modulating protein...    69   8e-13
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      67   2e-12
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    31   0.14 
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||...    27   2.3  
SPAC13G7.03 |||up-frameshift suppressor3 family|Schizosaccharomy...    27   4.0  
SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr 2|||Ma...    26   6.9  
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch...    26   6.9  
SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr 3...    25   9.2  
SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe...    25   9.2  

>SPAC4F8.10c |stg1||SM22/transgelin-like actin modulating protein
           Stg1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 174

 Score = 68.9 bits (161), Expect = 8e-13
 Identities = 50/162 (30%), Positives = 81/162 (50%), Gaps = 2/162 (1%)
 Frame = +1

Query: 127 EKEAQEWIEGVLGAKFPPGELFEDVLKDGTVLCQLINKLKPGSVPKINTTGGQFKMMENI 306
           EKEA+EWIE  L  K        D L+ G +LC++  +    ++ +   +   F  MENI
Sbjct: 6   EKEAREWIEETLHTKLNAQLDLLDQLQSGVILCRICKEALGANI-RYKESNMPFVQMENI 64

Query: 307 TNF-QSAIKAYGVPDIDVFQTVDLWEKKDIAQVVSTLFALGRESYRHAEWSGPCLGPKPA 483
           + F   A +   VP  D+FQT DL+E+++  QV+ ++ +  R + +        LGPK A
Sbjct: 65  SAFINYAQQVVHVPSQDMFQTSDLFERRNDEQVLRSIHSFSRYAAKMFPGKVRGLGPKLA 124

Query: 484 DECKRDFS-DEVLKAGQTVIGLQAGSNKGATQSGQNLGAGRK 606
           ++  R FS  +  +  + V  LQ GS    TQ  + +   R+
Sbjct: 125 EKKPRVFSAQQQREFREGVNSLQYGSFDMPTQGTEKIAFSRR 166


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 67.3 bits (157), Expect = 2e-12
 Identities = 35/98 (35%), Positives = 55/98 (56%), Gaps = 1/98 (1%)
 Frame = +1

Query: 133 EAQEWIEGVLGAKFPPGELFEDVLKDGTVLCQLINKLKPGSVPKINTTGG-QFKMMENIT 309
           EA++WIE  LG    P   FE  L++G VL  L+ K +P  + KI  +   QF+  +NI 
Sbjct: 46  EAKKWIEECLGTDLGPTSTFEQSLRNGVVLALLVQKFQPDKLIKIFYSNELQFRHSDNIN 105

Query: 310 NFQSAIKAYGVPDIDVFQTVDLWEKKDIAQVVSTLFAL 423
            F   I   G+P+I  F+  D++E K++ +V+  + AL
Sbjct: 106 KFLDFIHGIGLPEIFHFELTDIYEGKNLPKVIYCIHAL 143


>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 31.5 bits (68), Expect = 0.14
 Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 4/101 (3%)
 Frame = +1

Query: 133 EAQEWIEGVLGAKFPPGELFEDVLKDGTVLCQLINKLKPGSVPKINTTGGQFKMMENITN 312
           EA++W+E     ++   + F D L +G VLCQL  K  P      +    ++++ E  T 
Sbjct: 69  EAKKWLEEETNNEYQNLDDFVDALVNGKVLCQLAFKYYP---KLASNWKPRYQISERNTV 125

Query: 313 FQSA----IKAYGVPDIDVFQTVDLWEKKDIAQVVSTLFAL 423
           + +A    +   G+     F+T DL  + +I +V+  L AL
Sbjct: 126 YLNAFFHFLDFIGMFTPFRFETKDLVRRFNIPKVIYCLHAL 166


>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 992

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
 Frame = -1

Query: 251 PGFSLLMSWQR----TVPSLRTSSNSSPGGNLAPRTPSIHSWASFSFS 120
           PG   L   QR    T P L TSS++ PGG     + + HS    S S
Sbjct: 210 PGVGTLQQPQRAGSDTFPDLNTSSSNQPGGEPNVASANTHSLEILSSS 257


>SPAC13G7.03 |||up-frameshift suppressor3 family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 278

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 20/81 (24%), Positives = 34/81 (41%)
 Frame = +1

Query: 43  EKALTQSHNMSLERQVRAKXASKRNPEKEKEAQEWIEGVLGAKFPPGELFEDVLKDGTVL 222
           EK  ++    S++ + + + A K      K  +   E    +K  P E    V+K+  V 
Sbjct: 165 EKGKSKPSKKSVKAKKKLRLAEKPASNNSKAGKSSQESKKSSK-APAESAAAVIKEDKVS 223

Query: 223 CQLINKLKPGSVPKINTTGGQ 285
            +  +K KP   P  N+T  Q
Sbjct: 224 DRKKSKKKPKKTPVSNSTASQ 244


>SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 614

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 31/108 (28%), Positives = 47/108 (43%), Gaps = 16/108 (14%)
 Frame = +1

Query: 115 NPEKEKEAQEWIEGVL------GAKFPPG-ELFE--DVLKDGTVLCQLINKLKPGSV--- 258
           N E+ +E  + I  VL      G++ P   E FE  D  KDG +L +LIN   P ++   
Sbjct: 111 NEEERREFIKHINSVLAGDPDVGSRVPINTETFEFFDQCKDGLILSKLINDSVPDTIDER 170

Query: 259 ----PKINTTGGQFKMMENITNFQSAIKAYGVPDIDVFQTVDLWEKKD 390
                + N     FK +EN     ++ KA G   I      D+ E ++
Sbjct: 171 VLNKQRNNKPLDNFKCIENNNVVINSAKAMGGISITNIGAGDILEGRE 218


>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
           Pss1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = +1

Query: 79  ERQVRAKXASKRNPEKEKEAQEWIEGVLGAKFPPGELFEDV 201
           ER+  AK A+K   EK+K + ++ EG  G + PP    E+V
Sbjct: 665 EREA-AKAATKSEAEKQKPSGKFEEGT-GGRAPPPPPAEEV 703


>SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 437

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -1

Query: 530 WPAFRTSSEKSRLHSSAGLGPRQGPLHSA 444
           WP FR+   +S L+ ++G  P   P +S+
Sbjct: 112 WPYFRSLRRESMLYHTSGSYPESQPPYSS 140


>SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -1

Query: 740 YHFRVDIHKGLQSHISVHYHTNLYKIILKINITFCW 633
           Y++ V I + LQS+IS        K IL I    CW
Sbjct: 202 YNWWVSILRRLQSNISTSERITYTKAILAIAKHHCW 237


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,199,281
Number of Sequences: 5004
Number of extensions: 69302
Number of successful extensions: 182
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)