Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_F22
         (618 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    22   3.6  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    21   6.3  
AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein p...    21   6.3  
AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein p...    21   6.3  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    21   8.3  

>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
 Frame = +1

Query: 130 PGVSSLSQYSTSVVHGSPLVAPAVYNAALIAPG---VVPAVAALS-QAPHSPAV 279
           P V     +   +     L AP  YN  L+AP    V+  +  +S  AP +P +
Sbjct: 488 PDVKIFLPFRFHIYTPEDLFAPNTYNRHLVAPNGDHVISLIDEISYMAPPAPLI 541


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +2

Query: 305 PSTLLRSSLPAPLTSRQKLCLATTTSA 385
           P+T   S+L +P  + +  CL + TS+
Sbjct: 220 PTTSSSSALESPNPASRSSCLGSNTSS 246


>AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +2

Query: 305 PSTLLRSSLPAPLTSRQKLCLATTTSA 385
           P+T   S+L +P  + +  CL + TS+
Sbjct: 9   PTTSSSSALESPNPASRSSCLGSNTSS 35


>AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +2

Query: 305 PSTLLRSSLPAPLTSRQKLCLATTTSA 385
           P+T   S+L +P  + +  CL + TS+
Sbjct: 9   PTTSSSSALESPNPASRSSCLGSNTSS 35


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +2

Query: 305 PSTLLRSSLPAPLTSRQKLCLATTTSA 385
           P+T   S+L +P  + +  CL + TS+
Sbjct: 220 PTTSSSSALESPDPASRSSCLGSNTSS 246


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,813
Number of Sequences: 336
Number of extensions: 2294
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15770591
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)