Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_F_F22
(618 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39016| Best HMM Match : Extensin_2 (HMM E-Value=0.53) 33 0.25
SB_31961| Best HMM Match : EGF (HMM E-Value=0) 33 0.25
SB_39340| Best HMM Match : DUF1656 (HMM E-Value=2.9) 31 0.99
SB_46776| Best HMM Match : Deltaretro_Tax (HMM E-Value=7.4) 29 2.3
SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15) 29 3.0
SB_32762| Best HMM Match : Extensin_2 (HMM E-Value=0.062) 29 3.0
SB_15358| Best HMM Match : Baculo_PEP_C (HMM E-Value=0.03) 29 3.0
SB_32383| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_30749| Best HMM Match : FARP (HMM E-Value=0.032) 29 4.0
SB_19464| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_59557| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_33291| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_17753| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_14000| Best HMM Match : DUF1213 (HMM E-Value=0.71) 27 9.2
SB_4565| Best HMM Match : zf-B_box (HMM E-Value=0.44) 27 9.2
SB_8320| Best HMM Match : p450 (HMM E-Value=0) 27 9.2
>SB_39016| Best HMM Match : Extensin_2 (HMM E-Value=0.53)
Length = 287
Score = 32.7 bits (71), Expect = 0.25
Identities = 38/151 (25%), Positives = 51/151 (33%), Gaps = 11/151 (7%)
Frame = +1
Query: 178 SPLVAPAVYNA----ALIAPGVVPAVAALSQAPHSP--AVVLDAVNGVPLDTPEVVAARA 339
+PL APA A A AP VPA AA + AP +P A V VP +P V +
Sbjct: 85 APLAAPAQVAAAPAPAAAAPAPVPAAAAPAPAPAAPSAAAAPAPVRSVPSTSPSSVRSAT 144
Query: 340 AHF-----QAKALSGYHHLRKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPVV 504
++ Q ++S + R TP+
Sbjct: 145 PYYPQTQQQQSSVSSSYSYYPRAAPSYYYSPPAPAAYAPSTATATVAAAGGVFTESTPLH 204
Query: 505 SPFSLYPKALSVHPW*KALNIFKSKSCGFTA 597
P S +A S P I S + FTA
Sbjct: 205 PPLSAPVRAPSPSPLTSIYYIKTSTAIAFTA 235
>SB_31961| Best HMM Match : EGF (HMM E-Value=0)
Length = 2813
Score = 32.7 bits (71), Expect = 0.25
Identities = 26/70 (37%), Positives = 31/70 (44%)
Frame = +1
Query: 124 IVPGVSSLSQYSTSVVHGSPLVAPAVYNAALIAPGVVPAVAALSQAPHSPAVVLDAVNGV 303
IVP V + VV P V PAV P VVPAV + P P +V AV +
Sbjct: 93 IVPAVPEVVPAVPEVVPAVPEVVPAVPEIVPAVPEVVPAVPEI--VPAVPEIV-PAVPEI 149
Query: 304 PLDTPEVVAA 333
PE+V A
Sbjct: 150 VPAVPEIVPA 159
Score = 32.3 bits (70), Expect = 0.32
Identities = 26/70 (37%), Positives = 31/70 (44%)
Frame = +1
Query: 124 IVPGVSSLSQYSTSVVHGSPLVAPAVYNAALIAPGVVPAVAALSQAPHSPAVVLDAVNGV 303
IVP V + +V P V PAV + P V PAV + P P +V AV V
Sbjct: 44 IVPAVPEVVPAVPEIVPAVPEVVPAVPEVVPVVPEVEPAVPEV--VPAVPEIV-PAVPEV 100
Query: 304 PLDTPEVVAA 333
PEVV A
Sbjct: 101 VPAVPEVVPA 110
Score = 32.3 bits (70), Expect = 0.32
Identities = 24/70 (34%), Positives = 31/70 (44%)
Frame = +1
Query: 124 IVPGVSSLSQYSTSVVHGSPLVAPAVYNAALIAPGVVPAVAALSQAPHSPAVVLDAVNGV 303
+VP V + VV P V PAV P +VPAV + P P +V AV +
Sbjct: 86 VVPAVPEIVPAVPEVVPAVPEVVPAVPEVVPAVPEIVPAVPEV--VPAVPEIV-PAVPEI 142
Query: 304 PLDTPEVVAA 333
PE+V A
Sbjct: 143 VPAVPEIVPA 152
Score = 32.3 bits (70), Expect = 0.32
Identities = 25/80 (31%), Positives = 32/80 (40%)
Frame = +1
Query: 124 IVPGVSSLSQYSTSVVHGSPLVAPAVYNAALIAPGVVPAVAALSQAPHSPAVVLDAVNGV 303
+VP V + VV P + PAV P +VPAV + P P VV V
Sbjct: 114 VVPAVPEIVPAVPEVVPAVPEIVPAVPEIVPAVPEIVPAVPEI--VPAVPEVVPAVPEVV 171
Query: 304 PLDTPEVVAARAAHFQAKAL 363
+ P V A + KAL
Sbjct: 172 AVPEPPVDRLEALERKLKAL 191
Score = 31.9 bits (69), Expect = 0.43
Identities = 25/70 (35%), Positives = 31/70 (44%)
Frame = +1
Query: 124 IVPGVSSLSQYSTSVVHGSPLVAPAVYNAALIAPGVVPAVAALSQAPHSPAVVLDAVNGV 303
+VP V + VV P + PAV P VVPAV + P P +V AV V
Sbjct: 72 VVPVVPEVEPAVPEVVPAVPEIVPAVPEVVPAVPEVVPAVPEV--VPAVPEIV-PAVPEV 128
Query: 304 PLDTPEVVAA 333
PE+V A
Sbjct: 129 VPAVPEIVPA 138
Score = 30.7 bits (66), Expect = 0.99
Identities = 25/70 (35%), Positives = 30/70 (42%)
Frame = +1
Query: 124 IVPGVSSLSQYSTSVVHGSPLVAPAVYNAALIAPGVVPAVAALSQAPHSPAVVLDAVNGV 303
I+P V + VV P + PAV P VVP V + P P VV AV +
Sbjct: 37 ILPAVPEIVPAVPEVVPAVPEIVPAVPEVVPAVPEVVPVVPEVE--PAVPEVV-PAVPEI 93
Query: 304 PLDTPEVVAA 333
PEVV A
Sbjct: 94 VPAVPEVVPA 103
>SB_39340| Best HMM Match : DUF1656 (HMM E-Value=2.9)
Length = 225
Score = 30.7 bits (66), Expect = 0.99
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Frame = +1
Query: 121 AIVPGVSSLSQYSTSVVHGSPLVAPAVYNAALIAPGVVPA-VAALSQAPHSPAVVLDAVN 297
A V GV ++ S + V G P +A A P + A V ++ PH ++ V
Sbjct: 151 ACVTGVPYITLTSVACVTGVPYIALASVTCVTGVPYITLALVTCVTGVPHITLALVTCVT 210
Query: 298 GVPLDTPEVVA 330
GVP T +VA
Sbjct: 211 GVPHITLALVA 221
>SB_46776| Best HMM Match : Deltaretro_Tax (HMM E-Value=7.4)
Length = 332
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +3
Query: 372 PPPPQAVCCRSRGLQLCRLSPRL 440
PPPPQ R+R + LC SPR+
Sbjct: 162 PPPPQTKKPRARSVSLCGPSPRI 184
>SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15)
Length = 876
Score = 29.1 bits (62), Expect = 3.0
Identities = 19/49 (38%), Positives = 27/49 (55%)
Frame = -3
Query: 514 KKEKLQE*NMPIQRELNRRRLQGKSRRGERRQSCRPRERQQTACGGGGS 368
+KEK +E + +REL R+ G R ER +S RER++ G GS
Sbjct: 431 EKEKEKEKELERERELERKHDLGPERGRERERS---RERERDRRGSYGS 476
>SB_32762| Best HMM Match : Extensin_2 (HMM E-Value=0.062)
Length = 830
Score = 29.1 bits (62), Expect = 3.0
Identities = 18/56 (32%), Positives = 25/56 (44%)
Frame = +1
Query: 163 SVVHGSPLVAPAVYNAALIAPGVVPAVAALSQAPHSPAVVLDAVNGVPLDTPEVVA 330
++ P +AP+ N A P P AALS S A V+ + P PE +A
Sbjct: 306 NIAPSPPNIAPSPPNTAPSPPHSDPIAAALSGNLASTAPVISGQSSFPAPPPESIA 361
>SB_15358| Best HMM Match : Baculo_PEP_C (HMM E-Value=0.03)
Length = 435
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/48 (27%), Positives = 26/48 (54%)
Frame = +1
Query: 118 SAIVPGVSSLSQYSTSVVHGSPLVAPAVYNAALIAPGVVPAVAALSQA 261
S I+PG+S + + ++ G P + PA+ PG++ A++ + A
Sbjct: 374 SGILPGLSGILPGLSGILPGLPGILPALPGILAALPGILAALSGILAA 421
>SB_32383| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1850
Score = 28.7 bits (61), Expect = 4.0
Identities = 21/61 (34%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Frame = +1
Query: 181 PLVAPAVYNAALIAPGVVPAVAALSQAPHSPAVVLDAVNGVPLDTP-EVVAARAAHFQAK 357
P APA AA P PA A +QAP +P P P AA A + A+
Sbjct: 1291 PSAAPAPAPAAQAYPSAAPATAYPTQAPANPTAA--PATAYPAQAPVNPTAAPATAYPAQ 1348
Query: 358 A 360
A
Sbjct: 1349 A 1349
>SB_30749| Best HMM Match : FARP (HMM E-Value=0.032)
Length = 2565
Score = 28.7 bits (61), Expect = 4.0
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = -3
Query: 484 PIQRELNRRRLQGKSRRGERRQSCRPRERQQ 392
PI+R+ RRR + + RR +RR+ R R R +
Sbjct: 481 PIRRQRRRRRRRRRRRRRQRRRRRRRRRRNR 511
Score = 28.3 bits (60), Expect = 5.3
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = -3
Query: 478 QRELNRRRLQGKSRRGERRQSCRPRERQQTACGG--GGSQTELLPGSERRGQRRPQ 317
+R NRR+ + + RR RR+ R R+ G GGS+ L R +RRP+
Sbjct: 506 RRRRNRRKRRRRKRRTARRKRRELRRRRLRMKRGRRGGSRNRGLRRGRRGRKRRPR 561
>SB_19464| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1653
Score = 28.7 bits (61), Expect = 4.0
Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = -3
Query: 475 RELNRRRLQGKSRRGERRQSCRPRERQQTACGGGGSQTELLPGS-ERRGQRRPQ 317
RE +R R + + R R +S R ER Q G S PG ER G+RRP+
Sbjct: 608 RERSRERPRSRERPRSRERSDRRDERPQRRGSRGRS-----PGRREREGERRPR 656
>SB_59557| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1109
Score = 27.9 bits (59), Expect = 7.0
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Frame = -3
Query: 511 KEKLQE*NMPIQRELNRR---RLQGKSRRGERRQSCRPRERQQTACGGGGSQTELL 353
K K++ ++P ++E R L G S+ G R CRP E + T G ++E L
Sbjct: 432 KSKIRSRDLPTEKEKTSRSSSELSGDSQ-GSTRPRCRPAEPEGTRDRKRGKESESL 486
>SB_33291| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1227
Score = 27.9 bits (59), Expect = 7.0
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = -3
Query: 463 RRRLQGKSRRGERRQSCRPRERQQTAC 383
++ + GK ++C+P+ERQ+ AC
Sbjct: 513 QKDMDGKEYGNASNENCKPQERQERAC 539
>SB_17753| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 243
Score = 27.9 bits (59), Expect = 7.0
Identities = 9/31 (29%), Positives = 16/31 (51%)
Frame = -1
Query: 303 DTVNSIQDDSRRVRGLREGGDCRNHTGSDEC 211
D + + DD+ G R DC+N+ ++ C
Sbjct: 70 DNIINDNDDNNNSHGYRSNSDCKNNINNNNC 100
>SB_14000| Best HMM Match : DUF1213 (HMM E-Value=0.71)
Length = 1281
Score = 27.5 bits (58), Expect = 9.2
Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Frame = -3
Query: 514 KKEKLQE*NMPIQRELNRRRLQGKSRRGERR---QSCRPRERQQTACGGGGSQTELLPGS 344
+K K + + P ++ R + ++RR + Q+ RPR+ + T GG + S
Sbjct: 230 RKTKKSKTSKPQDKQAARPKQARQARRKTSKPQDQAARPRQHKTTRARQGGQASPKTKTS 289
Query: 343 ERRGQRRPQE 314
+ + Q +PQ+
Sbjct: 290 KPQDQDKPQD 299
>SB_4565| Best HMM Match : zf-B_box (HMM E-Value=0.44)
Length = 121
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +3
Query: 168 GPWIASGSSCCVQRCT-HRSRCGSCSRRP 251
GP A+G+ C QRC+ H+S C R P
Sbjct: 18 GPVAANGALNCQQRCSDHKSICDGFCRGP 46
>SB_8320| Best HMM Match : p450 (HMM E-Value=0)
Length = 1207
Score = 27.5 bits (58), Expect = 9.2
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = -1
Query: 393 RPLAEVVVARQSFCLEV--SGAGSDDLRSVEGDTVNSIQDDSRRVRGLRE 250
RPL EV R +FC + + AG + +VEG TV SRR+ + E
Sbjct: 292 RPLLEVWKWR-TFCTRMPKTDAGRREKATVEGQTVGGRDPASRRLANISE 340
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,484,454
Number of Sequences: 59808
Number of extensions: 361999
Number of successful extensions: 1547
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1370
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1514
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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