Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_F_F22
(618 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70756-12|CAA94796.2| 180|Caenorhabditis elegans Hypothetical p... 33 0.22
Z77662-5|CAB01192.2| 579|Caenorhabditis elegans Hypothetical pr... 31 0.87
Z68108-2|CAA92135.1| 406|Caenorhabditis elegans Hypothetical pr... 31 0.87
AC025716-21|AAT39978.1| 586|Caenorhabditis elegans Hypothetical... 31 0.87
AC025716-20|AAT39977.2| 946|Caenorhabditis elegans Hypothetical... 31 0.87
U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor... 30 1.5
AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing... 30 1.5
AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing... 29 2.7
Z69790-3|CAD56579.1| 1234|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z69790-2|CAA93653.2| 1271|Caenorhabditis elegans Hypothetical pr... 29 3.5
U70852-14|AAM98014.1| 783|Caenorhabditis elegans Gei-4(four) in... 29 3.5
U70852-13|AAM98015.1| 788|Caenorhabditis elegans Gei-4(four) in... 29 3.5
AF339882-1|AAK14396.1| 1329|Caenorhabditis elegans attractin pro... 29 3.5
Z81486-2|CAB03984.1| 461|Caenorhabditis elegans Hypothetical pr... 28 6.1
Z49968-12|CAA90264.1| 880|Caenorhabditis elegans Hypothetical p... 28 6.1
Z49966-8|CAA90246.1| 880|Caenorhabditis elegans Hypothetical pr... 28 6.1
Z11505-10|CAA77588.2| 590|Caenorhabditis elegans Hypothetical p... 28 6.1
U13642-8|AAG00040.1| 428|Caenorhabditis elegans Similar to tran... 28 6.1
U13642-7|AAZ32791.1| 446|Caenorhabditis elegans Similar to tran... 28 6.1
AL132904-13|CAC35846.4| 778|Caenorhabditis elegans Hypothetical... 27 8.1
>Z70756-12|CAA94796.2| 180|Caenorhabditis elegans Hypothetical
protein T06E4.10 protein.
Length = 180
Score = 32.7 bits (71), Expect = 0.22
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
Frame = +1
Query: 121 AIVPGVSSLSQYSTSVVHGSPLVAPAVYNAALIA------PGVVPAVAALSQAPHSPAVV 282
A PG+++ + VV +P +APA A ++A P PA A +PA+
Sbjct: 70 AYAPGLAAPAFAPAPVVAAAPALAPAYAPAPVVAAAPAFAPAYAPAPVASPMIAAAPALA 129
Query: 283 LDAVNGVPL 309
++NG+P+
Sbjct: 130 AASINGLPV 138
>Z77662-5|CAB01192.2| 579|Caenorhabditis elegans Hypothetical
protein F47B8.5 protein.
Length = 579
Score = 30.7 bits (66), Expect = 0.87
Identities = 20/54 (37%), Positives = 22/54 (40%)
Frame = +1
Query: 178 SPLVAPAVYNAALIAPGVVPAVAALSQAPHSPAVVLDAVNGVPLDTPEVVAARA 339
+P APA A AP PA A +PA DA P PEV A A
Sbjct: 486 APAPAPAPAPEAAPAPEPAPAPAPAPAPEAAPAAAPDAAPAEPAPVPEVAPAPA 539
>Z68108-2|CAA92135.1| 406|Caenorhabditis elegans Hypothetical
protein T05A10.3 protein.
Length = 406
Score = 30.7 bits (66), Expect = 0.87
Identities = 17/65 (26%), Positives = 32/65 (49%)
Frame = -3
Query: 514 KKEKLQE*NMPIQRELNRRRLQGKSRRGERRQSCRPRERQQTACGGGGSQTELLPGSERR 335
++ KLQE Q + ++RR++ RR + RQ R ++ G +T + SE+
Sbjct: 311 EEAKLQEQRRREQEDEHKRRMEEYHRREQERQEALKRREEEIKRREEGEKTRTVSSSEKV 370
Query: 334 GQRRP 320
++ P
Sbjct: 371 EKKDP 375
>AC025716-21|AAT39978.1| 586|Caenorhabditis elegans Hypothetical
protein Y39G10AR.18b protein.
Length = 586
Score = 30.7 bits (66), Expect = 0.87
Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 5/96 (5%)
Frame = +1
Query: 115 YSAIVPGVSSLSQYSTSVVHGSPLVAPAVYNAALIAPGVVPAVA---ALSQAPHSPAV-V 282
YS+ P S S+ H S ++ P+ A P +VPA A A + P PA
Sbjct: 137 YSSETPTSHHHHHRSNSISHSSDVIRPSQPKATAPPPPLVPAPARATASTPPPAPPAARA 196
Query: 283 LDAVNGVPLDTP-EVVAARAAHFQAKALSGYHHLRK 387
PL+ P +++ AK ++ H +R+
Sbjct: 197 QSPKREEPLEPPTDLIHHGGGQLDAKTMNALHTIRE 232
>AC025716-20|AAT39977.2| 946|Caenorhabditis elegans Hypothetical
protein Y39G10AR.18a protein.
Length = 946
Score = 30.7 bits (66), Expect = 0.87
Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 5/96 (5%)
Frame = +1
Query: 115 YSAIVPGVSSLSQYSTSVVHGSPLVAPAVYNAALIAPGVVPAVA---ALSQAPHSPAV-V 282
YS+ P S S+ H S ++ P+ A P +VPA A A + P PA
Sbjct: 497 YSSETPTSHHHHHRSNSISHSSDVIRPSQPKATAPPPPLVPAPARATASTPPPAPPAARA 556
Query: 283 LDAVNGVPLDTP-EVVAARAAHFQAKALSGYHHLRK 387
PL+ P +++ AK ++ H +R+
Sbjct: 557 QSPKREEPLEPPTDLIHHGGGQLDAKTMNALHTIRE 592
>U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor
U2AF65 protein.
Length = 496
Score = 29.9 bits (64), Expect = 1.5
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -3
Query: 463 RRRLQGKSRRGERRQSCRPRERQQTACGGGGSQTELLPGSERR 335
++R + +SR + R+ R R+R + GGGG + ERR
Sbjct: 59 KKRKRSRSRDRDTRRRSRSRDRGERRGGGGGGDRDRSRSRERR 101
>AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing
factor protein 1,isoform a protein.
Length = 496
Score = 29.9 bits (64), Expect = 1.5
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -3
Query: 463 RRRLQGKSRRGERRQSCRPRERQQTACGGGGSQTELLPGSERR 335
++R + +SR + R+ R R+R + GGGG + ERR
Sbjct: 59 KKRKRSRSRDRDTRRRSRSRDRGERRGGGGGGDRDRSRSRERR 101
>AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing
factor protein 1,isoform d protein.
Length = 471
Score = 29.1 bits (62), Expect = 2.7
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = -3
Query: 463 RRRLQGKSRRGERRQSCRPRERQQTACGGGGSQTELLPGSERRGQRRPQE 314
++R + +SR + R+ R R+R + GGGG E E Q +P+E
Sbjct: 59 KKRKRSRSRDRDTRRRSRSRDRGERRGGGGGGDDEARSRREPEPQ-KPRE 107
>Z69790-3|CAD56579.1| 1234|Caenorhabditis elegans Hypothetical
protein F33C8.1b protein.
Length = 1234
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/38 (34%), Positives = 15/38 (39%), Gaps = 8/38 (21%)
Frame = +3
Query: 162 QCGPWIASGSSCCVQR--------CTHRSRCGSCSRRP 251
QC W+ SGS + R C CG C R P
Sbjct: 829 QCHSWVTSGSGSVINRVCQAESVVCEEHKTCGECQRDP 866
>Z69790-2|CAA93653.2| 1271|Caenorhabditis elegans Hypothetical
protein F33C8.1a protein.
Length = 1271
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/38 (34%), Positives = 15/38 (39%), Gaps = 8/38 (21%)
Frame = +3
Query: 162 QCGPWIASGSSCCVQR--------CTHRSRCGSCSRRP 251
QC W+ SGS + R C CG C R P
Sbjct: 866 QCHSWVTSGSGSVINRVCQAESVVCEEHKTCGECQRDP 903
>U70852-14|AAM98014.1| 783|Caenorhabditis elegans Gei-4(four)
interacting proteinprotein 4, isoform a protein.
Length = 783
Score = 28.7 bits (61), Expect = 3.5
Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
Frame = -3
Query: 490 NMPIQRELNRRRLQGKSRRGERRQSCRPRERQQTACGGGGSQTELLPGSE---RRGQRRP 320
N +L +++ SR +S R RER CG G + ++P S R RP
Sbjct: 43 NQSENAKLRKKQADKDSRERREIESLRERERHVEMCGSSGPEKYIVPISHFDLSRPTDRP 102
Query: 319 QE 314
E
Sbjct: 103 ME 104
>U70852-13|AAM98015.1| 788|Caenorhabditis elegans Gei-4(four)
interacting proteinprotein 4, isoform b protein.
Length = 788
Score = 28.7 bits (61), Expect = 3.5
Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
Frame = -3
Query: 490 NMPIQRELNRRRLQGKSRRGERRQSCRPRERQQTACGGGGSQTELLPGSE---RRGQRRP 320
N +L +++ SR +S R RER CG G + ++P S R RP
Sbjct: 48 NQSENAKLRKKQADKDSRERREIESLRERERHVEMCGSSGPEKYIVPISHFDLSRPTDRP 107
Query: 319 QE 314
E
Sbjct: 108 ME 109
>AF339882-1|AAK14396.1| 1329|Caenorhabditis elegans attractin
protein.
Length = 1329
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/38 (34%), Positives = 15/38 (39%), Gaps = 8/38 (21%)
Frame = +3
Query: 162 QCGPWIASGSSCCVQR--------CTHRSRCGSCSRRP 251
QC W+ SGS + R C CG C R P
Sbjct: 866 QCHSWVTSGSGSVINRVCQAESVVCEEHKTCGECQRDP 903
>Z81486-2|CAB03984.1| 461|Caenorhabditis elegans Hypothetical
protein C53A5.3 protein.
Length = 461
Score = 27.9 bits (59), Expect = 6.1
Identities = 19/72 (26%), Positives = 31/72 (43%)
Frame = -1
Query: 393 RPLAEVVVARQSFCLEVSGAGSDDLRSVEGDTVNSIQDDSRRVRGLREGGDCRNHTGSDE 214
RP+ E ++ + ++ + D R T IQDD G REG D RN + +
Sbjct: 386 RPIPEDALSALNDDSLIADQANPDKRLPPQITDGMIQDDGDFYDGEREGDDRRNESDAKR 445
Query: 213 CSVVHSRSYQRR 178
+ S ++R
Sbjct: 446 AAQFESEGGEKR 457
>Z49968-12|CAA90264.1| 880|Caenorhabditis elegans Hypothetical
protein M110.7 protein.
Length = 880
Score = 27.9 bits (59), Expect = 6.1
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +1
Query: 304 PLDTPEVVAARAAHFQAKALSGYHHLR 384
P+DTP + AA + SGYHHLR
Sbjct: 479 PIDTP-TPSGTAAWIKESYYSGYHHLR 504
>Z49966-8|CAA90246.1| 880|Caenorhabditis elegans Hypothetical
protein M110.7 protein.
Length = 880
Score = 27.9 bits (59), Expect = 6.1
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +1
Query: 304 PLDTPEVVAARAAHFQAKALSGYHHLR 384
P+DTP + AA + SGYHHLR
Sbjct: 479 PIDTP-TPSGTAAWIKESYYSGYHHLR 504
>Z11505-10|CAA77588.2| 590|Caenorhabditis elegans Hypothetical
protein F59B2.11 protein.
Length = 590
Score = 27.9 bits (59), Expect = 6.1
Identities = 23/92 (25%), Positives = 37/92 (40%)
Frame = -1
Query: 348 EVSGAGSDDLRSVEGDTVNSIQDDSRRVRGLREGGDCRNHTGSDECSVVHSRSYQRRSMD 169
E S ++ RSV+ N++ +D+ +R+ + N +DE H + + D
Sbjct: 397 ESSNEETEGRRSVK--KTNTLNEDNNG-NSIRKESNLSNDEETDEVVDTHRINTEDDEED 453
Query: 168 HTGAVLGQRTNSRHDSAVGQRSHHTGLGDGGR 73
+ T R D RS G G GGR
Sbjct: 454 EEKPPTEKGTPKRKDRKSDSRSTSKGFGSGGR 485
>U13642-8|AAG00040.1| 428|Caenorhabditis elegans Similar to
transporter of divalentcations protein 1, isoform a
protein.
Length = 428
Score = 27.9 bits (59), Expect = 6.1
Identities = 14/52 (26%), Positives = 19/52 (36%)
Frame = -1
Query: 234 NHTGSDECSVVHSRSYQRRSMDHTGAVLGQRTNSRHDSAVGQRSHHTGLGDG 79
+H D H S+ DH + G N H + G +HH DG
Sbjct: 373 SHGHDDHGHDSHGHSHDHNEHDHGHSHGGNNDNHGHSHSAGSDNHHGHSHDG 424
>U13642-7|AAZ32791.1| 446|Caenorhabditis elegans Similar to
transporter of divalentcations protein 1, isoform b
protein.
Length = 446
Score = 27.9 bits (59), Expect = 6.1
Identities = 14/52 (26%), Positives = 19/52 (36%)
Frame = -1
Query: 234 NHTGSDECSVVHSRSYQRRSMDHTGAVLGQRTNSRHDSAVGQRSHHTGLGDG 79
+H D H S+ DH + G N H + G +HH DG
Sbjct: 391 SHGHDDHGHDSHGHSHDHNEHDHGHSHGGNNDNHGHSHSAGSDNHHGHSHDG 442
>AL132904-13|CAC35846.4| 778|Caenorhabditis elegans Hypothetical
protein Y111B2A.17 protein.
Length = 778
Score = 27.5 bits (58), Expect = 8.1
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = +1
Query: 169 VHGSPLVAPAVYNAALIAPGVVPAVAALSQAPHSPAVVLDAVNGVPLD 312
VHG + + N ++ G V +AP S L+A++GVP +
Sbjct: 441 VHGHDMQCLSFVNPSIFVSGAEEKVFRAFRAPKSFVKSLEAISGVPTE 488
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,408,041
Number of Sequences: 27780
Number of extensions: 238833
Number of successful extensions: 856
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 846
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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