Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_F20
         (407 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces pombe...    25   6.0  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    24   7.9  
SPAC22H10.13 |zym1||metallothionein |Schizosaccharomyces pombe|c...    24   7.9  

>SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 580

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = -3

Query: 120 KDAGLSRR--EGQEASEDEQFEHFVDCAVDDLQS 25
           K+AG  ++   GQ+  EDE+F +  D   DD  +
Sbjct: 415 KEAGYRKQLVPGQKVPEDEEFHYCEDPEFDDFST 448


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +2

Query: 35  SSTAQSTKCSNCSSSLASWPSRRLSPASFSA 127
           SST  S+  S  SSS +S  S   S +SFS+
Sbjct: 340 SSTISSSSSSPSSSSFSSTTSSSKSSSSFSS 370


>SPAC22H10.13 |zym1||metallothionein |Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 50

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +2

Query: 29 CKSSTAQSTKCSNC 70
          CKSS   + KCS+C
Sbjct: 32 CKSSAVDNCKCSSC 45


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 760,394
Number of Sequences: 5004
Number of extensions: 6291
Number of successful extensions: 27
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)