Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_F20
         (407 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0562 + 4126368-4128196,4128517-4128715,4128827-4128886,412...    27   4.3  
12_01_1024 - 10467644-10469274,10469424-10469482,10469820-104703...    27   7.6  
03_06_0447 - 33989301-33989609,33990084-33990242,33990535-339906...    27   7.6  

>01_01_0562 +
           4126368-4128196,4128517-4128715,4128827-4128886,
           4129129-4129233,4129987-4130127,4130223-4130285,
           4130925-4131152,4131250-4131333,4132000-4132157,
           4132252-4132777,4133641-4133700,4133904-4134026,
           4134906-4135181,4135282-4135347,4135500-4135631,
           4135977-4136798,4137026-4137306,4137564-4137796,
           4138022-4138260,4138367-4138558,4138808-4139080,
           4139186-4139332
          Length = 2078

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 117 PSQLVHGSRRIHRARRGCLHRSAG 188
           P  L+H SRR    + GC+H S G
Sbjct: 14  PPPLLHPSRRRRHRQGGCIHTSPG 37


>12_01_1024 - 10467644-10469274,10469424-10469482,10469820-10470357,
            10470975-10471666,10471912-10472062,10473797-10473864,
            10473964-10474042,10474763-10474765,10476427-10477255
          Length = 1349

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = -3

Query: 123  EKDAGLSRREGQEASEDEQFEHFVDCAVDD 34
            +K+  ++R+  ++ +ED+  +H VD AV D
Sbjct: 1150 QKNDKINRQLQEDQTEDDHMDHLVDVAVAD 1179


>03_06_0447 -
           33989301-33989609,33990084-33990242,33990535-33990659,
           33991141-33991336,33991490-33991622,33992246-33992475
          Length = 383

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = +2

Query: 2   FGRPMXIQLCKSSTAQSTKCSNCSSSLASWPSRRL 106
           F RP   ++      +  +CS+ ++S ASW  ++L
Sbjct: 18  FRRPRPSKVAAGDLVEPARCSDAAASPASWIDKKL 52


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,082,213
Number of Sequences: 37544
Number of extensions: 46479
Number of successful extensions: 188
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 718652880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)