Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_F_F18
(732 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_UPI0000D55BE7 Cluster: PREDICTED: similar to CG3165-PA;... 127 3e-28
UniRef50_Q5TQT2 Cluster: ENSANGP00000026876; n=1; Anopheles gamb... 114 2e-24
UniRef50_Q0C7B5 Cluster: Three prime repair exonuclease 1, putat... 101 1e-20
UniRef50_UPI00015B57E4 Cluster: PREDICTED: similar to three prim... 99 6e-20
UniRef50_Q9VQJ7 Cluster: CG3165-PA; n=2; Sophophora|Rep: CG3165-... 99 1e-19
UniRef50_UPI000069F3E4 Cluster: UPI000069F3E4 related cluster; n... 93 6e-18
UniRef50_Q6QH49 Cluster: 3' repair exonuclease; n=4; Nucleopolyh... 90 6e-17
UniRef50_A7SCZ1 Cluster: Predicted protein; n=1; Nematostella ve... 88 2e-16
UniRef50_Q9NSU2 Cluster: Three prime repair exonuclease 1; n=17;... 84 4e-15
UniRef50_Q9BQ50 Cluster: Three prime repair exonuclease 2; n=16;... 77 6e-13
UniRef50_UPI0000E46C7F Cluster: PREDICTED: similar to Three prim... 65 1e-09
UniRef50_UPI0000E49E75 Cluster: PREDICTED: similar to three prim... 64 4e-09
UniRef50_A0LZ46 Cluster: Exonuclease family protein; n=10; Flavo... 63 6e-09
UniRef50_A6ESS3 Cluster: DNA polymerase III, epsilon subunit; n=... 62 1e-08
UniRef50_A4C086 Cluster: DNA polymerase III subunit; n=2; Polari... 62 1e-08
UniRef50_Q934V3 Cluster: Putative uncharacterized protein HCM2.0... 58 2e-07
UniRef50_A6DIP6 Cluster: Exonuclease; n=1; Lentisphaera araneosa... 58 3e-07
UniRef50_A4CLT9 Cluster: Putative uncharacterized protein; n=1; ... 57 5e-07
UniRef50_Q0LKH2 Cluster: DNA polymerase III, epsilon subunit; n=... 54 3e-06
UniRef50_A2TNW8 Cluster: DNA polymerase III, epsilon subunit; n=... 54 3e-06
UniRef50_Q5DB02 Cluster: SJCHGC02520 protein; n=2; Schistosoma j... 54 3e-06
UniRef50_A4BWD8 Cluster: DNA polymerase III, epsilon subunit; n=... 54 5e-06
UniRef50_Q011G8 Cluster: DNA helicase RecG; n=2; Ostreococcus|Re... 54 5e-06
UniRef50_A5FIG6 Cluster: DNA polymerase III, epsilon subunit; n=... 53 6e-06
UniRef50_UPI0000E47DC6 Cluster: PREDICTED: similar to 3-5 exonuc... 52 1e-05
UniRef50_Q92AA9 Cluster: DinG protein; n=13; Listeria|Rep: DinG ... 52 1e-05
UniRef50_Q895K2 Cluster: DNA polymerase III polC-type; n=14; Clo... 52 2e-05
UniRef50_A4YW65 Cluster: Putative uncharacterized protein; n=2; ... 51 3e-05
UniRef50_A1ZKT0 Cluster: Exonuclease; n=1; Microscilla marina AT... 51 3e-05
UniRef50_Q81ST0 Cluster: DnaQ family exonuclease/DinG family hel... 51 3e-05
UniRef50_A7A526 Cluster: Putative uncharacterized protein; n=1; ... 51 3e-05
UniRef50_A5VK04 Cluster: DnaQ family exonuclease/DinG family hel... 51 3e-05
UniRef50_A1RKY8 Cluster: DNA polymerase III, epsilon subunit; n=... 50 6e-05
UniRef50_Q26FQ2 Cluster: DNA polymerase III, epsilon subunit; n=... 49 1e-04
UniRef50_A4KRE5 Cluster: DNA polymerase III, epsilon subunit; n=... 49 1e-04
UniRef50_Q8EUK5 Cluster: DNA polymerase III subunit alpha; n=1; ... 49 1e-04
UniRef50_Q3SKJ9 Cluster: DNA polymerase III, epsilon subunit; n=... 49 1e-04
UniRef50_Q6KIN3 Cluster: DNA polymerase III alpha subunit; n=1; ... 48 2e-04
UniRef50_Q63RW4 Cluster: Possible DNA polymerase/helicase; n=27;... 48 2e-04
UniRef50_Q83YZ1 Cluster: DNA polymerase III alpha subunit; n=1; ... 48 2e-04
UniRef50_A0GYI8 Cluster: DNA polymerase III, epsilon subunit; n=... 48 2e-04
UniRef50_A6EU25 Cluster: DNA polymerase III, epsilon subunit; n=... 48 3e-04
UniRef50_A4X9Y0 Cluster: DNA polymerase III, epsilon subunit; n=... 48 3e-04
UniRef50_A3XPR4 Cluster: Nuclease subunit Cho of the excinucleas... 48 3e-04
UniRef50_Q60WS9 Cluster: Putative uncharacterized protein CBG190... 48 3e-04
UniRef50_Q9JYS6 Cluster: DNA polymerase III, epsilon subunit; n=... 47 4e-04
UniRef50_Q1ART4 Cluster: DNA polymerase III, epsilon subunit; n=... 47 4e-04
UniRef50_A7CWU9 Cluster: DNA-directed DNA polymerase; n=1; Opitu... 47 4e-04
UniRef50_A3UIB9 Cluster: DNA polymerase III, epsilon subunit; n=... 47 4e-04
UniRef50_Q10384 Cluster: Uncharacterized protein Rv2191/MT2247; ... 47 5e-04
UniRef50_Q01KC6 Cluster: H0215F08.4 protein; n=4; Oryza sativa|R... 46 7e-04
UniRef50_Q7NZA2 Cluster: Probable DNA-directed DNA polymerase II... 46 0.001
UniRef50_Q7NC15 Cluster: PolC; n=1; Mycoplasma gallisepticum|Rep... 46 0.001
UniRef50_Q64S03 Cluster: DNA polymerase III epsilon chain; n=5; ... 46 0.001
UniRef50_A1ZC44 Cluster: DNA polymerase III, epsilon subunit; n=... 46 0.001
UniRef50_Q8EQD9 Cluster: ATP-dependent DNA helicase; n=1; Oceano... 45 0.002
UniRef50_Q81Y85 Cluster: DNA polymerase III, epsilon subunit, pu... 45 0.002
UniRef50_Q1MZX4 Cluster: Putative uncharacterized protein; n=1; ... 45 0.002
UniRef50_A5EY86 Cluster: DNA polymerase III, epsilon subunit; n=... 45 0.002
UniRef50_Q5P3L6 Cluster: Nuclease subunit Cho of the excinucleas... 45 0.002
UniRef50_Q1YU82 Cluster: DNA polymerase III, epsilon subunit; n=... 45 0.002
UniRef50_A2U0G0 Cluster: DNA Pol III Epsilon Chain; n=2; Polarib... 45 0.002
UniRef50_A0TFD8 Cluster: DNA polymerase III, epsilon subunit; n=... 45 0.002
UniRef50_Q682U6 Cluster: Putative uncharacterized protein At5g26... 45 0.002
UniRef50_Q14P64 Cluster: Probable dna polymerase III alpha subun... 44 0.003
UniRef50_A6ECG9 Cluster: DNA polymerase III, epsilon subunit; n=... 44 0.003
UniRef50_A4AXV6 Cluster: Putative uncharacterized protein; n=2; ... 44 0.003
UniRef50_A3HRT4 Cluster: Putative uncharacterized protein; n=1; ... 44 0.003
UniRef50_Q9CEK5 Cluster: ATP-dependent helicase DinG; n=3; Lacto... 44 0.004
UniRef50_A1G6Z7 Cluster: DNA polymerase III, epsilon subunit; n=... 44 0.004
UniRef50_O83649 Cluster: DNA polymerase III subunit epsilon; n=1... 44 0.004
UniRef50_Q5FJX1 Cluster: ATP-dependent DNA helicase; n=5; Lactob... 43 0.007
UniRef50_Q2B3X2 Cluster: ATP-dependent DNA helicase; n=2; Bacill... 43 0.007
UniRef50_A3JBF5 Cluster: Putative uncharacterized protein; n=2; ... 43 0.007
UniRef50_A2UA15 Cluster: DNA polymerase III, epsilon subunit; n=... 43 0.007
UniRef50_A4G2P4 Cluster: Putative DNA polymerase/helicase; n=1; ... 43 0.009
UniRef50_A0Y3N2 Cluster: Putative uncharacterized protein; n=2; ... 43 0.009
UniRef50_A4SZE6 Cluster: DNA polymerase III, epsilon subunit; n=... 42 0.012
UniRef50_Q1WU39 Cluster: ATP-dependent helicase, DinG family; n=... 42 0.016
UniRef50_A6SVF1 Cluster: Uncharacterized conserved protein; n=4;... 42 0.016
UniRef50_Q9PQB4 Cluster: DNA polymerase III polC-type; n=1; Urea... 42 0.016
UniRef50_Q9KC83 Cluster: ATP-dependent DNA helicase; n=3; Bacill... 42 0.021
UniRef50_Q6YQB0 Cluster: DNA polymerase III alpha subunit; n=2; ... 42 0.021
UniRef50_A6WGD9 Cluster: DNA polymerase III, epsilon subunit; n=... 42 0.021
UniRef50_A5BCR2 Cluster: Putative uncharacterized protein; n=1; ... 41 0.027
UniRef50_Q9Z8D3 Cluster: DNA Polymerase III Epsilon Chain; n=8; ... 41 0.036
UniRef50_Q8A811 Cluster: DNA Pol III Epsilon Chain; n=21; cellul... 41 0.036
UniRef50_Q21VB4 Cluster: DNA polymerase III, epsilon subunit; n=... 41 0.036
UniRef50_Q839U7 Cluster: DNA polymerase III, epsilon subunit; n=... 40 0.048
UniRef50_Q831X1 Cluster: DNA polymerase III, epsilon subunit/ATP... 40 0.048
UniRef50_Q8U4P3 Cluster: Putative uncharacterized protein PF0037... 40 0.048
UniRef50_Q38X67 Cluster: Putative ATP-dependent helicase, DinG f... 40 0.063
UniRef50_Q038V8 Cluster: Rad3-related DNA helicase; n=1; Lactoba... 40 0.063
UniRef50_A5Z7T3 Cluster: Putative uncharacterized protein; n=1; ... 40 0.063
UniRef50_A5KMD9 Cluster: Putative uncharacterized protein; n=1; ... 40 0.063
UniRef50_A6PV20 Cluster: DNA polymerase III, epsilon subunit; n=... 40 0.083
UniRef50_Q89WN8 Cluster: DNA polymerase III epsilon chain; n=7; ... 39 0.11
UniRef50_Q47S15 Cluster: Exonuclease; n=1; Thermobifida fusca YX... 39 0.11
UniRef50_Q3K0L7 Cluster: Exonuclease, DNA polymerase III, epsilo... 39 0.11
UniRef50_A7B5W2 Cluster: Putative uncharacterized protein; n=1; ... 39 0.11
UniRef50_A0L3L4 Cluster: DNA polymerase III, epsilon subunit; n=... 39 0.11
UniRef50_Q2Q0H1 Cluster: Putative DNA polymerase type III, exonu... 39 0.15
UniRef50_Q895Z5 Cluster: DNA polymerase III alpha subunit; n=1; ... 39 0.15
UniRef50_Q3JDE1 Cluster: Exonuclease; n=3; Gammaproteobacteria|R... 39 0.15
UniRef50_Q15TC4 Cluster: DNA polymerase III, epsilon subunit; n=... 39 0.15
UniRef50_Q11UG6 Cluster: DNA polymerase III, epsilon subunit; n=... 39 0.15
UniRef50_Q0EZC1 Cluster: Probable DNA polymerase III (Epsilon ch... 39 0.15
UniRef50_A6LLU9 Cluster: DNA polymerase III, alpha subunit; n=1;... 39 0.15
UniRef50_A3I8T8 Cluster: Bifunctional ATP-dependent DNA helicase... 39 0.15
UniRef50_Q8YE22 Cluster: DNA POLYMERASE III, EPSILON CHAIN; n=27... 38 0.19
UniRef50_Q03FN6 Cluster: Rad3-related DNA helicase; n=1; Pedioco... 38 0.25
UniRef50_A7RWU1 Cluster: Predicted protein; n=2; Nematostella ve... 38 0.25
UniRef50_Q8RA32 Cluster: DNA polymerase III polC-type; n=7; Clos... 38 0.25
UniRef50_Q6MC14 Cluster: Putative DNA polymerase III, epsilon ch... 38 0.33
UniRef50_Q5KXX5 Cluster: ATP-dependent DNA helicase; n=2; Geobac... 38 0.33
UniRef50_Q081L5 Cluster: DNA polymerase III, epsilon subunit; n=... 38 0.33
UniRef50_A4CM07 Cluster: DNA polymerase III, epsilon subunit; n=... 38 0.33
UniRef50_A2PLZ2 Cluster: Gp39; n=2; Vibrio cholerae|Rep: Gp39 - ... 38 0.33
UniRef50_A1K1I0 Cluster: DNA-directed DNA polymerase; n=24; Prot... 38 0.33
UniRef50_Q8CUQ0 Cluster: Hypothetical conserved protein; n=1; Oc... 37 0.44
UniRef50_Q2GDU1 Cluster: DNA polymerase III, epsilon subunit; n=... 37 0.44
UniRef50_Q1VJ53 Cluster: DNA polymerase III subunit epsilon; n=1... 37 0.44
UniRef50_Q1K1G2 Cluster: DNA polymerase III, epsilon subunit; n=... 37 0.44
UniRef50_Q4QGE6 Cluster: Mitochondrial DNA polymerase I protein ... 37 0.44
UniRef50_Q9PJK6 Cluster: DNA polymerase III, epsilon subunit, pu... 37 0.59
UniRef50_Q30T43 Cluster: Exonuclease; n=1; Thiomicrospira denitr... 37 0.59
UniRef50_Q1UAN0 Cluster: DNA polymerase III, epsilon subunit; n=... 37 0.59
UniRef50_A5Z9S3 Cluster: Putative uncharacterized protein; n=1; ... 37 0.59
UniRef50_A5UUI5 Cluster: DNA polymerase III, epsilon subunit; n=... 37 0.59
UniRef50_A0NJE4 Cluster: DNA helicase, Rad3-related family; n=2;... 37 0.59
UniRef50_Q9CGW0 Cluster: DNA polymerase III, epsilon chain; n=3;... 36 0.77
UniRef50_Q03WE5 Cluster: Rad3-related DNA helicase; n=1; Leucono... 36 0.77
UniRef50_A5IU60 Cluster: Exonuclease, RNase T and DNA polymerase... 36 0.77
UniRef50_A1YZY0 Cluster: Gram-positive type DNA polymerase III a... 36 0.77
UniRef50_P43745 Cluster: DNA polymerase III subunit epsilon; n=4... 36 0.77
UniRef50_Q88WB1 Cluster: ATP-dependent helicase DinG; n=2; Lacto... 36 1.0
UniRef50_Q6M3W0 Cluster: DNA polymerase III epsilon subunit or r... 36 1.0
UniRef50_Q9ZHF6 Cluster: DNA polymerase III polC-type; n=3; Ther... 36 1.0
UniRef50_P54394 Cluster: Probable ATP-dependent helicase dinG ho... 36 1.0
UniRef50_Q60AW7 Cluster: DNA polymerase III, epsilon subunit; n=... 36 1.4
UniRef50_Q057S0 Cluster: DNA polymerase III, e subunit; n=1; Buc... 36 1.4
UniRef50_A5CE47 Cluster: DNA polymerase III epsilon chain; n=1; ... 36 1.4
UniRef50_A4TVW6 Cluster: DNA polymerase III, epsilon subunit; n=... 36 1.4
UniRef50_A4ECT2 Cluster: Putative uncharacterized protein; n=1; ... 36 1.4
UniRef50_Q73L66 Cluster: DNA polymerase III domain protein; n=1;... 35 1.8
UniRef50_Q05FQ3 Cluster: DNA polymerase III epsilon subunit; n=1... 35 1.8
UniRef50_Q04A97 Cluster: DNA polymerase III, epsilon subunit rel... 35 1.8
UniRef50_A6DDM5 Cluster: DNA polymerase III, epsilon chain; n=1;... 35 1.8
UniRef50_A5MUE3 Cluster: Putative uncharacterized protein; n=1; ... 35 1.8
UniRef50_Q5ZLQ8 Cluster: Putative uncharacterized protein; n=2; ... 35 2.4
UniRef50_Q3VN57 Cluster: Exonuclease; n=2; Chlorobium/Pelodictyo... 35 2.4
UniRef50_Q0A6Z2 Cluster: Putative PAS/PAC sensor protein precurs... 35 2.4
UniRef50_Q54KG0 Cluster: Putative uncharacterized protein; n=1; ... 35 2.4
UniRef50_P47277 Cluster: DNA polymerase III polC-type; n=10; Myc... 35 2.4
UniRef50_Q92GL1 Cluster: DNA polymerase III subunit epsilon; n=9... 35 2.4
UniRef50_UPI0000510268 Cluster: COG0322: Nuclease subunit of the... 34 3.1
UniRef50_Q9K6I8 Cluster: BH3741 protein; n=1; Bacillus haloduran... 34 3.1
UniRef50_Q7MAI6 Cluster: DNA POLYMERASE III EPSILON SUBUNIT DNAQ... 34 3.1
UniRef50_Q5GS93 Cluster: DNA polymerase III epsilon subunit; n=4... 34 3.1
UniRef50_Q4JWC2 Cluster: Putative exonuclease; n=1; Corynebacter... 34 3.1
UniRef50_Q47RH7 Cluster: DNA polymerase III, epsilon subunit; n=... 34 3.1
UniRef50_Q3D960 Cluster: DnaQ family exonuclease/DinG family hel... 34 3.1
UniRef50_Q04F80 Cluster: DNA polymerase III, alpha subunit; n=2;... 34 3.1
UniRef50_A5IXK4 Cluster: DNA polymerase III alpha subunit; n=1; ... 34 3.1
UniRef50_A3V111 Cluster: Exonuclease, DNA polymerase III, epsilo... 34 3.1
UniRef50_A1SNC5 Cluster: Exonuclease, RNase T and DNA polymerase... 34 3.1
UniRef50_Q5SK39 Cluster: DNA polymerase III epsilon chain-like p... 34 4.1
UniRef50_Q41GU3 Cluster: DNA polymerase III, epsilon subunit:Dna... 34 4.1
UniRef50_Q3VXD4 Cluster: Exonuclease; n=1; Frankia sp. EAN1pec|R... 34 4.1
UniRef50_Q1FF73 Cluster: DNA polymerase III, epsilon subunit:DNA... 34 4.1
UniRef50_A7A5A0 Cluster: Putative uncharacterized protein; n=1; ... 34 4.1
UniRef50_A6NSI0 Cluster: Putative uncharacterized protein; n=1; ... 34 4.1
UniRef50_A5TTA5 Cluster: DNA-directed DNA polymerase III alpha s... 34 4.1
UniRef50_Q8IK94 Cluster: Putative uncharacterized protein; n=1; ... 34 4.1
UniRef50_Q7VQB5 Cluster: DNA polymerase III epsilon subunit; n=5... 33 5.5
UniRef50_A4J5B5 Cluster: DNA polymerase III, epsilon subunit; n=... 33 5.5
UniRef50_A0K225 Cluster: DNA polymerase III, epsilon subunit; n=... 33 5.5
UniRef50_Q6LYU6 Cluster: Exonuclease; n=4; Methanococcus|Rep: Ex... 33 5.5
UniRef50_Q6A9T9 Cluster: DNA polymerase III epsilon subunit; n=1... 33 7.2
UniRef50_Q2GJZ1 Cluster: DNA polymerase III, epsilon subunit; n=... 33 7.2
UniRef50_Q8XJR3 Cluster: DNA polymerase III polC-type; n=9; Clos... 33 7.2
UniRef50_Q97RK4 Cluster: DNA polymerase III, epsilon subunit/ATP... 33 9.5
UniRef50_Q2RJC1 Cluster: DNA polymerase III, epsilon subunit; n=... 33 9.5
UniRef50_A4VTT3 Cluster: Rad3-related DNA helicase; n=6; Strepto... 33 9.5
UniRef50_A0HHK4 Cluster: DNA polymerase III, epsilon subunit; n=... 33 9.5
UniRef50_Q556S6 Cluster: Putative uncharacterized protein; n=2; ... 33 9.5
UniRef50_Q22S54 Cluster: Exonuclease family protein; n=1; Tetrah... 33 9.5
UniRef50_A5E6E8 Cluster: Putative uncharacterized protein; n=1; ... 33 9.5
>UniRef50_UPI0000D55BE7 Cluster: PREDICTED: similar to CG3165-PA;
n=1; Tribolium castaneum|Rep: PREDICTED: similar to
CG3165-PA - Tribolium castaneum
Length = 319
Score = 127 bits (306), Expect = 3e-28
Identities = 68/144 (47%), Positives = 86/144 (59%), Gaps = 1/144 (0%)
Frame = +2
Query: 113 MVRITTYVFFDIETTGLPFQXXNKTKXTELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEK 292
M +I T+VF D+ETTGLP NKT+ TELC ++V D +++ KLS NP K
Sbjct: 28 MSQIKTFVFLDLETTGLPHLEHNKTRITELCAVSVRADHIELGCFPRVQNKLSLCFNPMK 87
Query: 293 KIHPDVVVLTGLTNESLKNAPTFKQRA-NAIVSFLNELPKPICLVAHNGNSFDYKILLAE 469
I P+ LTGL+N+ L+ +F A + I +L KPICLVAHNGN FDY IL AE
Sbjct: 88 MISPEATSLTGLSNDLLEYQASFSSDAVDVIRKWLEMNQKPICLVAHNGNRFDYPILRAE 147
Query: 470 CNDAGILLPSDLLCIDSLIGFRKI 541
LP D+LC+DSL FR I
Sbjct: 148 VEKTRNKLPEDILCLDSLNAFRSI 171
>UniRef50_Q5TQT2 Cluster: ENSANGP00000026876; n=1; Anopheles gambiae
str. PEST|Rep: ENSANGP00000026876 - Anopheles gambiae
str. PEST
Length = 322
Score = 114 bits (275), Expect = 2e-24
Identities = 71/179 (39%), Positives = 92/179 (51%), Gaps = 3/179 (1%)
Frame = +2
Query: 113 MVRITTYVFFDIETTGLPFQXXNKTKXTELCFLAVSRDDLDIQSGLPP--IKKLSFVLNP 286
MV + ++VFFD+ETTGLP +TK TEL +A +R+ L S PP KLS NP
Sbjct: 1 MVELKSFVFFDLETTGLPEYEHFRTKITELSMVACAREHLLEASTEPPRVTHKLSLCFNP 60
Query: 287 EKKIHPDVVVLTGLTNESLKNAPTFKQRANAIVS-FLNELPKPICLVAHNGNSFDYKILL 463
+ I TGL N+ L+ F A +V FL L KP+CLVAHNG FD+ +L
Sbjct: 61 HRMITLGSSQATGLYNDLLEKEAKFDANAGEMVKLFLERLQKPVCLVAHNGQRFDFILLK 120
Query: 464 AECNDAGILLPSDLLCIDSLIGFRKILKTTQKSLPLKMNTSKDDSASELLWPELDVSTE 640
+ LP DL C+DSL FR+I +S + N D EL + L V E
Sbjct: 121 QHLLRIDVALPGDLYCVDSLPAFREIEADVDRSY-FENNEGLDSEIPELEYQALRVMEE 178
>UniRef50_Q0C7B5 Cluster: Three prime repair exonuclease 1,
putative; n=1; Aedes aegypti|Rep: Three prime repair
exonuclease 1, putative - Aedes aegypti (Yellowfever
mosquito)
Length = 320
Score = 101 bits (243), Expect = 1e-20
Identities = 69/191 (36%), Positives = 102/191 (53%), Gaps = 4/191 (2%)
Frame = +2
Query: 119 RITTYVFFDIETTGLPFQXXNKTKXTELCFLAVSRDDL-DIQSGLPP--IKKLSFVLNPE 289
++ ++VFFD+ETT L K TE+ +A SR L D + G P + K +F LNP+
Sbjct: 4 QLGSFVFFDLETTDLI--GIKTPKITEISLIACSRKHLLDTKRGELPRVLHKQTFCLNPQ 61
Query: 290 KKIHPDVVVLTGLTNESLKNAPTFKQR-ANAIVSFLNELPKPICLVAHNGNSFDYKILLA 466
+ IHP TGL N+ L++ F + A IV FL L P CLVAHNGN FD+ IL
Sbjct: 62 RMIHPRASETTGLYNDLLEDESKFDENTAQLIVLFLRRLQAPTCLVAHNGNRFDFVILKK 121
Query: 467 ECNDAGILLPSDLLCIDSLIGFRKILKTTQKSLPLKMNTSKDDSASELLWPELDVSTENW 646
E LP D C+DSL F+ + + ++ K +++++ +EL EL T
Sbjct: 122 ELESLNAQLPDDTYCVDSLPLFQALEQAREQ----KAKAAQENADNELADLELCALTA-M 176
Query: 647 EEIDNLCASFS 679
EE++ ++ S
Sbjct: 177 EELEGSPSTLS 187
>UniRef50_UPI00015B57E4 Cluster: PREDICTED: similar to three prime
repair exonuclease 1, putative; n=1; Nasonia
vitripennis|Rep: PREDICTED: similar to three prime
repair exonuclease 1, putative - Nasonia vitripennis
Length = 325
Score = 99 bits (238), Expect = 6e-20
Identities = 64/197 (32%), Positives = 106/197 (53%), Gaps = 13/197 (6%)
Frame = +2
Query: 119 RITTYVFFDIETTGLPFQXXNKTKXTELCFLAVSRDDL--DIQS--GLPPIK-KLSFVLN 283
+I T+VFFD+ET+ L + + TEL +A R+ L D++ LP I KL+ +
Sbjct: 11 KIDTFVFFDLETSDL-IKGHRMPRITELSMVATDRNSLKNDMRDKLALPRIMHKLTIPIC 69
Query: 284 PEKKIHPDVVVLTGLTNESLKNAPTF-KQRANAIVSFLNELPKPICLVAHNGNSFDYKIL 460
P IH + + L N+SL++ F K N I+ F+N LP IC VAHNGN FDY +
Sbjct: 70 PNAPIHQEASFASNLWNDSLEHFKPFDKDTYNMIMLFINRLPGVICFVAHNGNRFDYPVF 129
Query: 461 LAECNDAGILLPSDLLCIDSLIGFRKILKTTQKS-------LPLKMNTSKDDSASELLWP 619
L+E + + P +LC+D+LI F++ Q + +P+ ++ ++ +L
Sbjct: 130 LSEIDKLQMTFPDRILCVDTLIAFKEFFSDAQPANMPPIPVVPIGVDEVDEEELEQLSKQ 189
Query: 620 ELDVSTENWEEIDNLCA 670
+ + S ++ E D+LC+
Sbjct: 190 DPNASLDD-EWNDSLCS 205
>UniRef50_Q9VQJ7 Cluster: CG3165-PA; n=2; Sophophora|Rep: CG3165-PA
- Drosophila melanogaster (Fruit fly)
Length = 351
Score = 98.7 bits (235), Expect = 1e-19
Identities = 61/161 (37%), Positives = 78/161 (48%), Gaps = 14/161 (8%)
Frame = +2
Query: 119 RITTYVFFDIETTGLPFQXXNKTKXTELCFLAVS---------RDDLDIQSGLPP----I 259
+I+T+ D+ETT LP N+ TELC A D D Q LP +
Sbjct: 16 KISTFAVLDLETTNLPAYRNNRVSITELCIYAFEAALLKKKKKEQDQDEQQELPAAPRVL 75
Query: 260 KKLSFVLNPEKKIHPDVVVLTGLTNESLKNAPTFK-QRANAIVSFLNELPKPICLVAHNG 436
KL+ + P + P+ +TGL+N L+ A IVSFL LP P+CLVAHNG
Sbjct: 76 HKLNVLFQPSMVVDPEAERITGLSNYLLERESQLDTDAAQLIVSFLKHLPSPVCLVAHNG 135
Query: 437 NSFDYKILLAECNDAGILLPSDLLCIDSLIGFRKILKTTQK 559
FD+ IL I LP L C+DSL F +I T QK
Sbjct: 136 WGFDFPILRQAFEKLNIELPQSLTCVDSLRAFMEIDDTQQK 176
>UniRef50_UPI000069F3E4 Cluster: UPI000069F3E4 related cluster; n=1;
Xenopus tropicalis|Rep: UPI000069F3E4 UniRef100 entry -
Xenopus tropicalis
Length = 228
Score = 93.1 bits (221), Expect = 6e-18
Identities = 58/150 (38%), Positives = 82/150 (54%), Gaps = 10/150 (6%)
Frame = +2
Query: 122 ITTYVFFDIETTGLPFQXXNKTKXTELCFLAVSRDDLD------IQSGLPPI-KKLSFVL 280
+ ++VF D+E TGL + N K TELC +AV L+ + LP + KL +
Sbjct: 5 VKSFVFLDLEATGLNY---NLPKITELCLVAVHVSSLENPETDQSEVQLPRVLDKLCLCV 61
Query: 281 NPEKKIHPDVVVLTGLTNESLKNA--PTFKQRANAIVS-FLNELPKPICLVAHNGNSFDY 451
+P+K I + +TGL+NE L N P F +V FLN +P+CLVAHNG +D+
Sbjct: 62 DPKKPITKEACNITGLSNEKLANCEKPCFNLNLVQLVKEFLNRQAQPVCLVAHNGLFYDF 121
Query: 452 KILLAECNDAGILLPSDLLCIDSLIGFRKI 541
+L AE LP LLC+DSL FR++
Sbjct: 122 PLLKAEFQQQNEELPGSLLCLDSLKAFRQL 151
>UniRef50_Q6QH49 Cluster: 3' repair exonuclease; n=4;
Nucleopolyhedrovirus|Rep: 3' repair exonuclease -
Anticarsia gemmatalis nuclear polyhedrosis virus
(AgMNPV)
Length = 230
Score = 89.8 bits (213), Expect = 6e-17
Identities = 60/170 (35%), Positives = 84/170 (49%), Gaps = 1/170 (0%)
Frame = +2
Query: 113 MVRITTYVFFDIETTGLPFQXXNKTKXTELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEK 292
M + TYVF D+ETTGLP ++T+ TEL V+R++L KL+ P
Sbjct: 1 MAVVKTYVFLDLETTGLPKLQNDQTQITELSLQCVTREEL--LGAARVCNKLTLCFEPTV 58
Query: 293 KIHPDVVVLTGLTNESLKNAPTFKQRANAIV-SFLNELPKPICLVAHNGNSFDYKILLAE 469
I LT L E+L+ P F +RA A++ SFL L P+CLVA+NG +FD+ IL
Sbjct: 59 PISEQASALTQLNAENLRGQPLFDKRAVALIESFLALLSPPVCLVAYNGFAFDFPILYKH 118
Query: 470 CNDAGILLPSDLLCIDSLIGFRKILKTTQKSLPLKMNTSKDDSASELLWP 619
D G S + C D+ + + S P M SK + + L P
Sbjct: 119 LKDNG--FASAVQCADA---YHALFAILDGSGPPTMKRSKSGTVTVKLCP 163
>UniRef50_A7SCZ1 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 201
Score = 87.8 bits (208), Expect = 2e-16
Identities = 52/143 (36%), Positives = 77/143 (53%), Gaps = 5/143 (3%)
Frame = +2
Query: 128 TYVFFDIETTGLPFQXXNKTKXTELCFLAVSRDDL--DIQSGLPP--IKKLSFVLNPEKK 295
T++F D+ETTGL + TE+C +AV +D L ++ P I KLS + P +
Sbjct: 1 TFIFLDLETTGL----RRPIEITEICLIAVQKDHLLRAAETKTEPRLIDKLSICVKPVQN 56
Query: 296 IHPDVVVLTGLTNESLKNAPTFKQR-ANAIVSFLNELPKPICLVAHNGNSFDYKILLAEC 472
I +TG+ L F ++ A I +FL P P CLVAH+G+ FD+ IL +E
Sbjct: 57 IECGASSITGINKMDLAEKREFDRKLAKVIKTFLRRQPSPSCLVAHSGDRFDFDILASEF 116
Query: 473 NDAGILLPSDLLCIDSLIGFRKI 541
+AG+ PS++ DS FRK+
Sbjct: 117 VNAGVKFPSEIQAADSWKAFRKL 139
>UniRef50_Q9NSU2 Cluster: Three prime repair exonuclease 1; n=17;
Theria|Rep: Three prime repair exonuclease 1 - Homo
sapiens (Human)
Length = 369
Score = 83.8 bits (198), Expect = 4e-15
Identities = 57/160 (35%), Positives = 81/160 (50%), Gaps = 15/160 (9%)
Frame = +2
Query: 128 TYVFFDIETTGLPFQXXNKTKXTELCFLAVSRDDLD---IQSGLPP--------IKKLSF 274
T +FFD+E TGLPF ++ K TELC LAV R L+ G PP + KLS
Sbjct: 68 TLIFFDMEATGLPF---SQPKVTELCLLAVHRCALESPPTSQGPPPTVPPPPRVVDKLSL 124
Query: 275 VLNPEKKIHPDVVVLTGLTNESLK--NAPTFKQR-ANAIVSFLNELPKPICLVAHNGNSF 445
+ P K P +TGL+ L F AN +++FL P+P CLVAHNG+ +
Sbjct: 125 CVAPGKACSPAASEITGLSTAVLAAHGRQCFDDNLANLLLAFLRRQPQPWCLVAHNGDRY 184
Query: 446 DYKILLAECNDAGILLPSD-LLCIDSLIGFRKILKTTQKS 562
D+ +L AE G+ D C+DS+ + + + + S
Sbjct: 185 DFPLLQAELAMLGLTSALDGAFCVDSITALKALERASSPS 224
>UniRef50_Q9BQ50 Cluster: Three prime repair exonuclease 2; n=16;
Mammalia|Rep: Three prime repair exonuclease 2 - Homo
sapiens (Human)
Length = 279
Score = 76.6 bits (180), Expect = 6e-13
Identities = 53/150 (35%), Positives = 76/150 (50%), Gaps = 11/150 (7%)
Frame = +2
Query: 119 RITTYVFFDIETTGLPFQXXNKTKXTELCFLAVSRDDLDI----QSG---LPPI-KKLSF 274
R T+VF D+E TGLP + + EL AV R L+ +SG LP + KL+
Sbjct: 49 RAETFVFLDLEATGLP---SVEPEIAELSLFAVHRSSLENPEHDESGALVLPRVLDKLTL 105
Query: 275 VLNPEKKIHPDVVVLTGLTNESL---KNAPTFKQRANAIVSFLNELPKPICLVAHNGNSF 445
+ PE+ +TGL++E L + A + +FL+ PICLVAHNG +
Sbjct: 106 CMCPERPFTAKASEITGLSSEGLARCRKAGFDGAVVRTLQAFLSRQAGPICLVAHNGFDY 165
Query: 446 DYKILLAECNDAGILLPSDLLCIDSLIGFR 535
D+ +L AE G LP D +C+D+L R
Sbjct: 166 DFPLLCAELRRLGARLPRDTVCLDTLPALR 195
>UniRef50_UPI0000E46C7F Cluster: PREDICTED: similar to Three prime
repair exonuclease 1; n=1; Strongylocentrotus
purpuratus|Rep: PREDICTED: similar to Three prime repair
exonuclease 1 - Strongylocentrotus purpuratus
Length = 438
Score = 65.3 bits (152), Expect = 1e-09
Identities = 49/131 (37%), Positives = 68/131 (51%), Gaps = 5/131 (3%)
Frame = +2
Query: 257 IKKLSFVLNPEKKIHPDVVVLTGLTNESL-KNAPT-FKQRANAIVS-FLNELPKPICLVA 427
I KL+ ++P K P LT L +L KN F + A+++ FL+ P+CLVA
Sbjct: 73 IDKLTLCVDPRKDTSPQSAELTKLDKHNLDKNKKLPFDEDVIAMLNIFLSRQEAPVCLVA 132
Query: 428 HNGNSFDYKILLAECNDAGILLP-SDLLCIDSLIGFRKILKTTQKSLPLKMNTSKDDSAS 604
HNG FD+ IL +E + P +DL C+DSL GFR TT+K K K+ S
Sbjct: 133 HNGMRFDFAILRSELSQLTTGDPLADLYCVDSLSGFRAGF-TTEKQGERKQREGKNKQES 191
Query: 605 ELL-WPELDVS 634
+ PE D+S
Sbjct: 192 TWMPSPEPDLS 202
>UniRef50_UPI0000E49E75 Cluster: PREDICTED: similar to three prime
repair exonuclease 1, putative; n=2; Strongylocentrotus
purpuratus|Rep: PREDICTED: similar to three prime repair
exonuclease 1, putative - Strongylocentrotus purpuratus
Length = 534
Score = 63.7 bits (148), Expect = 4e-09
Identities = 66/201 (32%), Positives = 91/201 (45%), Gaps = 28/201 (13%)
Frame = +2
Query: 122 ITTYVFFDIETTGLPFQXXNKTKXTELCFLAVSRDDL---DIQSGLP------------- 253
I ++VF D ET+ L + K EL +AV+R+ L D+ + L
Sbjct: 119 INSFVFLDFETSHL--LSKDHPKIIELSLIAVNRNGLLNSDVHTSLNCARKGNFTFDLSK 176
Query: 254 ---P--IKKLSFVLNPEKKIHPDVVVLTGLTNESL---KNAPTFKQRANAIVSFLNELPK 409
P I KL+ ++P K P +T L +L K P + I FL+
Sbjct: 177 VSLPRIIDKLTLCVDPRKSTSPQSARITKLDKRNLDKNKKLPFDEDVICMIKLFLSRQEA 236
Query: 410 PICLVAHNGNSFDYKILLAECNDAGI-LLPSDLLCIDSLIGFRKILKTTQKSLPLKMNTS 586
P+CLVAHNG FD+ IL +E + L +DL C+DSL GFR TT+K K
Sbjct: 237 PVCLVAHNGLRFDFAILRSELSRMTTGDLSADLYCVDSLSGFRAGF-TTEKQGERKQREG 295
Query: 587 KDDSASELLW---PELDVSTE 640
K + E W PE D+S E
Sbjct: 296 K--NKQEPTWMPSPEPDLSLE 314
>UniRef50_A0LZ46 Cluster: Exonuclease family protein; n=10;
Flavobacteria|Rep: Exonuclease family protein - Gramella
forsetii (strain KT0803)
Length = 457
Score = 63.3 bits (147), Expect = 6e-09
Identities = 48/127 (37%), Positives = 64/127 (50%)
Frame = +2
Query: 131 YVFFDIETTGLPFQXXNKTKXTELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDV 310
Y DIETTG + N+ TE+ A+ + D G + + ++NPE+ I P V
Sbjct: 2 YAILDIETTGGKY---NEEGITEI---AIYKFD-----GQKVVDQFISLVNPEQPIQPFV 50
Query: 311 VVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAGIL 490
V LTG+ N+ LKNAP F + A IV E+ + LVAHN FDY+IL E G
Sbjct: 51 VNLTGINNDMLKNAPKFYEVAKRIV----EITEDCILVAHNA-KFDYRILRTEFRRLGFE 105
Query: 491 LPSDLLC 511
LC
Sbjct: 106 YERKSLC 112
>UniRef50_A6ESS3 Cluster: DNA polymerase III, epsilon subunit; n=1;
unidentified eubacterium SCB49|Rep: DNA polymerase III,
epsilon subunit - unidentified eubacterium SCB49
Length = 460
Score = 62.5 bits (145), Expect = 1e-08
Identities = 48/127 (37%), Positives = 65/127 (51%)
Frame = +2
Query: 131 YVFFDIETTGLPFQXXNKTKXTELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDV 310
Y DIETTG + N+ TE+ A+ R D G + + ++NPE+ I P V
Sbjct: 3 YAILDIETTGGKY---NEEGITEI---AIYRFD-----GEKVVDQFCSLVNPERPIQPFV 51
Query: 311 VVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAGIL 490
V LTG+ ++ LKNAP F + A IV E+ K LVAHN FD +IL E + G
Sbjct: 52 VNLTGINSDMLKNAPKFYEVAKRIV----EITKDCILVAHNA-QFDNRILTTEFDRLGYD 106
Query: 491 LPSDLLC 511
+ LC
Sbjct: 107 FDLETLC 113
>UniRef50_A4C086 Cluster: DNA polymerase III subunit; n=2;
Polaribacter|Rep: DNA polymerase III subunit -
Polaribacter irgensii 23-P
Length = 361
Score = 62.1 bits (144), Expect = 1e-08
Identities = 47/127 (37%), Positives = 67/127 (52%)
Frame = +2
Query: 131 YVFFDIETTGLPFQXXNKTKXTELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDV 310
Y DIETTG F N+ TE+ A+ + D G + + ++NPEK+I V
Sbjct: 2 YAILDIETTGGKF---NEEGITEI---AIYKFD-----GHSVVDQFISLVNPEKEIQQFV 50
Query: 311 VVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAGIL 490
V LTG+ N+ L++AP F + A I+ E+ K LVAHN +FDY+IL E + G
Sbjct: 51 VRLTGINNKMLRSAPKFYEIAKRII----EITKDCTLVAHN-TTFDYRILSTEFDRLGYD 105
Query: 491 LPSDLLC 511
+ LC
Sbjct: 106 FNRNTLC 112
>UniRef50_Q934V3 Cluster: Putative uncharacterized protein
HCM2.0114c; n=1; Salmonella typhi|Rep: Putative
uncharacterized protein HCM2.0114c - Salmonella typhi
Length = 185
Score = 58.0 bits (134), Expect = 2e-07
Identities = 39/128 (30%), Positives = 61/128 (47%)
Frame = +2
Query: 143 DIETTGLPFQXXNKTKXTELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDVVVLT 322
DIE+TGL F +K + +A++R +L+ Q I L NP + I P +
Sbjct: 9 DIESTGLDFTSGHK-----IIEIAITRYELETQKH---IDSLEMRFNPRRSIDPKAQAVH 60
Query: 323 GLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAGILLPSD 502
G++ E L P A I +++ LVAHNG +FD + E G+ LP D
Sbjct: 61 GISLEDLATEPLLADHAGKIAAYMGACS---ALVAHNGEAFDLPFIRHEFGSYGVKLP-D 116
Query: 503 LLCIDSLI 526
+ +DS++
Sbjct: 117 IPLVDSML 124
>UniRef50_A6DIP6 Cluster: Exonuclease; n=1; Lentisphaera araneosa
HTCC2155|Rep: Exonuclease - Lentisphaera araneosa
HTCC2155
Length = 261
Score = 57.6 bits (133), Expect = 3e-07
Identities = 42/118 (35%), Positives = 58/118 (49%)
Frame = +2
Query: 134 VFFDIETTGLPFQXXNKTKXTELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDVV 313
VFFD+ETTGL + + E+C + V D G IK +NPEK I +
Sbjct: 10 VFFDLETTGL---NPTEDRIIEICCIKVHPD------GKRDIKTRR--VNPEKPISSEAS 58
Query: 314 VLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAGI 487
+TG+T+E +K+ PTFKQ A I F + +N FD ++L E AGI
Sbjct: 59 EITGITDEDVKDEPTFKQMAKGIYKFFEGCD----ISGYNIMRFDLRVLTEEFKRAGI 112
>UniRef50_A4CLT9 Cluster: Putative uncharacterized protein; n=1;
Robiginitalea biformata HTCC2501|Rep: Putative
uncharacterized protein - Robiginitalea biformata
HTCC2501
Length = 375
Score = 56.8 bits (131), Expect = 5e-07
Identities = 45/128 (35%), Positives = 59/128 (46%)
Frame = +2
Query: 128 TYVFFDIETTGLPFQXXNKTKXTELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPD 307
TY DIETTG F T+ +A+ R D G + ++NPE+ I P
Sbjct: 2 TYAVLDIETTGGKFDEEGITE------IAIHRFD-----GHEVVDTFISLINPERPIQPY 50
Query: 308 VVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAGI 487
V LTG+ + ++ AP F Q A IV E+ + LVAHN FDY+IL E G
Sbjct: 51 VQKLTGIDPKMVQTAPRFHQVAKRIV----EITRDSVLVAHNA-QFDYRILRTEFRRLGY 105
Query: 488 LLPSDLLC 511
LC
Sbjct: 106 NFERKTLC 113
>UniRef50_Q0LKH2 Cluster: DNA polymerase III, epsilon subunit; n=1;
Herpetosiphon aurantiacus ATCC 23779|Rep: DNA polymerase
III, epsilon subunit - Herpetosiphon aurantiacus ATCC
23779
Length = 282
Score = 54.4 bits (125), Expect = 3e-06
Identities = 46/166 (27%), Positives = 82/166 (49%)
Frame = +2
Query: 68 ISSNSSCKSQKLIHKMVRITTYVFFDIETTGLPFQXXNKTKXTELCFLAVSRDDLDIQSG 247
+ + + + L+ + + +V FD+E+TGL Q ++ +C +A R IQ G
Sbjct: 5 LGTRNEARMYTLLDRPLHTIPFVLFDMESTGLDVQIGHR-----ICEMAAMR----IQ-G 54
Query: 248 LPPIKKLSFVLNPEKKIHPDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVA 427
I + F++NP+++I P + G++ E + NAP+F + I +N+L LVA
Sbjct: 55 REIIDRCEFLVNPQREIDPAAFAVNGISAEMVANAPSFGE----IWPKVNKLFHEAVLVA 110
Query: 428 HNGNSFDYKILLAECNDAGILLPSDLLCIDSLIGFRKILKTTQKSL 565
HN FD L +E + L P + ID+L R+ + + +L
Sbjct: 111 HNA-YFDIGFLTSELSRID-LPPLETPVIDTLALARRYITARRYNL 154
>UniRef50_A2TNW8 Cluster: DNA polymerase III, epsilon subunit; n=1;
Dokdonia donghaensis MED134|Rep: DNA polymerase III,
epsilon subunit - Dokdonia donghaensis MED134
Length = 466
Score = 54.4 bits (125), Expect = 3e-06
Identities = 40/129 (31%), Positives = 65/129 (50%)
Frame = +2
Query: 125 TTYVFFDIETTGLPFQXXNKTKXTELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHP 304
T + D+ETTG + N + TE C AV D +I I K + ++NPE+ I P
Sbjct: 7 TYHCIIDVETTG---KGINGNRITEFC--AVRLKDGEI------IDKFTSLVNPEQYIPP 55
Query: 305 DVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAG 484
+ LTG+ + +++AP F++ A ++ E+ + VAHN N FD+ ++ E G
Sbjct: 56 FITNLTGIDDAMVEDAPLFEEIAQRVL----EITEGAIFVAHNVN-FDFNVIKGEFKRLG 110
Query: 485 ILLPSDLLC 511
+ LC
Sbjct: 111 VSFVRKKLC 119
>UniRef50_Q5DB02 Cluster: SJCHGC02520 protein; n=2; Schistosoma
japonicum|Rep: SJCHGC02520 protein - Schistosoma
japonicum (Blood fluke)
Length = 228
Score = 54.4 bits (125), Expect = 3e-06
Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 2/89 (2%)
Frame = +2
Query: 209 LAVSRDDLDIQSGLPPIK-KLSFVLNPEKKIHPDVVVLTGLTNESLKNAPTFKQRANAIV 385
LA SR L+ + P ++ KL+ NP + I ++GL +++L + F A ++
Sbjct: 2 LACSRFGLENATDEPRVENKLTLCFNPTRTISSIASKISGLNSDNLFHQKDFDSSAVDLI 61
Query: 386 S-FLNELPKPICLVAHNGNSFDYKILLAE 469
FLN L P+C VAHNG FD+ +L A+
Sbjct: 62 QLFLNRLDSPVCFVAHNGLRFDFPLLRAQ 90
>UniRef50_A4BWD8 Cluster: DNA polymerase III, epsilon subunit; n=3;
Flavobacteriales|Rep: DNA polymerase III, epsilon
subunit - Polaribacter irgensii 23-P
Length = 462
Score = 53.6 bits (123), Expect = 5e-06
Identities = 46/138 (33%), Positives = 63/138 (45%)
Frame = +2
Query: 131 YVFFDIETTGLPFQXXNKTKXTELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDV 310
Y DIETTG K TE+ L I G + + + ++NPE+ I +
Sbjct: 3 YAVVDIETTG---NGPKGQKITEISAL--------IFDGKKIVDEFTSLVNPEQNIPAFI 51
Query: 311 VVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAGIL 490
LTG+TN ++NAP F + A + E+ + VAHN N FDY I+ AE G
Sbjct: 52 TSLTGITNAMVRNAPRFFEIAKKVA----EITENTIFVAHNVN-FDYNIIQAEFKSLGFD 106
Query: 491 LPSDLLCIDSLIGFRKIL 544
LC L RKI+
Sbjct: 107 FKRKKLCTIRLT--RKII 122
>UniRef50_Q011G8 Cluster: DNA helicase RecG; n=2; Ostreococcus|Rep:
DNA helicase RecG - Ostreococcus tauri
Length = 1259
Score = 53.6 bits (123), Expect = 5e-06
Identities = 53/188 (28%), Positives = 81/188 (43%), Gaps = 13/188 (6%)
Frame = +2
Query: 23 KSTCQSFIFFQHANFISSNSSCKSQKLIHKMV-----RITTYVFFDIETTGLPFQXXNKT 187
KST ++ Q S+ ++ + K H V + + FD+ETTGL K+
Sbjct: 154 KSTTEAMTTTQRTETASAGTAPSNAKPTHVEVSRNSSEFPSIIVFDLETTGL---SKEKS 210
Query: 188 KXTELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEK-KIHPDVVVLTGLTNE--SLKNAPT 358
+ EL QS P S ++NP + I P + LTG+TN S + P+
Sbjct: 211 RIIELA----------AQSLTDPSAAFSTLVNPGRFNIPPAIKALTGITNSMVSAPDVPS 260
Query: 359 FKQRANAIVSFLNELPK-----PICLVAHNGNSFDYKILLAECNDAGILLPSDLLCIDSL 523
F A F+ ++ + P+ LVAHN FD + E G LPS D+L
Sbjct: 261 FAMAAEQFEMFIEQVRQSRPGAPVLLVAHNARQFDAAFIQYEYRRLGRELPSSWRFCDTL 320
Query: 524 IGFRKILK 547
R++L+
Sbjct: 321 PLARQLLR 328
>UniRef50_A5FIG6 Cluster: DNA polymerase III, epsilon subunit; n=1;
Flavobacterium johnsoniae UW101|Rep: DNA polymerase III,
epsilon subunit - Flavobacterium johnsoniae UW101
Length = 459
Score = 53.2 bits (122), Expect = 6e-06
Identities = 38/127 (29%), Positives = 58/127 (45%)
Frame = +2
Query: 131 YVFFDIETTGLPFQXXNKTKXTELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDV 310
Y DIETTG + ++ TE+ + I G + + ++NPE+ I P +
Sbjct: 6 YAIVDIETTG---GNASGSRITEIAII--------IHDGKNVLDRYETLVNPEQDIPPSI 54
Query: 311 VVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAGIL 490
LTG+ NE + NAP F + ++ L + VAHN N FDY + + AG
Sbjct: 55 FGLTGINNEMVANAPIFDDISEKVLEMLTDR----IFVAHNVN-FDYSFVHHQLEQAGFK 109
Query: 491 LPSDLLC 511
+ LC
Sbjct: 110 WSAKKLC 116
>UniRef50_UPI0000E47DC6 Cluster: PREDICTED: similar to 3-5
exonuclease TREX1; n=1; Strongylocentrotus
purpuratus|Rep: PREDICTED: similar to 3-5 exonuclease
TREX1 - Strongylocentrotus purpuratus
Length = 241
Score = 52.0 bits (119), Expect = 1e-05
Identities = 36/96 (37%), Positives = 47/96 (48%), Gaps = 5/96 (5%)
Frame = +2
Query: 302 PDVVVLTGLTNESL---KNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAEC 472
P+ LTGL N +L K K + + FL P+CLVAHNG FD+ +L E
Sbjct: 40 PETFGLTGLDNYNLGESKKMSLDKDIISMLNIFLKRQEGPVCLVAHNGKRFDFPMLRTEL 99
Query: 473 ND-AGILLPSDLLCIDSLIGFRKILKT-TQKSLPLK 574
+ L DL C DSL GF T T++ + LK
Sbjct: 100 SRLTAEELFEDLFCADSLEGFTSNFATETEEPISLK 135
>UniRef50_Q92AA9 Cluster: DinG protein; n=13; Listeria|Rep: DinG
protein - Listeria innocua
Length = 928
Score = 52.0 bits (119), Expect = 1e-05
Identities = 42/121 (34%), Positives = 58/121 (47%)
Frame = +2
Query: 131 YVFFDIETTGLPFQXXNKTKXTELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDV 310
Y+ D+ETTG ++ CF ++SG ++ S LNPEK I +
Sbjct: 6 YIVVDLETTGNQASREDRIIQFAACF---------VESG-KRLETYSTFLNPEKPIPAFI 55
Query: 311 VVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAGIL 490
LTG++ + +KNAP F+ A I S L + VAHN SFD+ L E AGI
Sbjct: 56 QELTGISPKDVKNAPLFEDVAPIIASLLED----TIFVAHN-VSFDWTFLEREMTRAGIS 110
Query: 491 L 493
L
Sbjct: 111 L 111
>UniRef50_Q895K2 Cluster: DNA polymerase III polC-type; n=14;
Clostridia|Rep: DNA polymerase III polC-type -
Clostridium tetani
Length = 1427
Score = 51.6 bits (118), Expect = 2e-05
Identities = 39/127 (30%), Positives = 61/127 (48%)
Frame = +2
Query: 128 TYVFFDIETTGLPFQXXNKTKXTELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPD 307
+YV FDIETTG F N K E+ + + + + K S +NPE+ I
Sbjct: 412 SYVVFDIETTG--FSNKND-KIIEIGAVKIKEGKV--------VDKYSTFVNPERIIPEK 460
Query: 308 VVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAGI 487
++ LTG+ + +K+AP ++ + F+ + LVAHN N FD + C D GI
Sbjct: 461 IIELTGIHDYMVKDAPKIEEVLPKFIDFIED----SILVAHNAN-FDVSFIKKNCKDFGI 515
Query: 488 LLPSDLL 508
+ +L
Sbjct: 516 HFNNPIL 522
>UniRef50_A4YW65 Cluster: Putative uncharacterized protein; n=2;
Bradyrhizobium|Rep: Putative uncharacterized protein -
Bradyrhizobium sp. (strain ORS278)
Length = 737
Score = 51.2 bits (117), Expect = 3e-05
Identities = 36/113 (31%), Positives = 61/113 (53%)
Frame = +2
Query: 131 YVFFDIETTGLPFQXXNKTKXTELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDV 310
YV DIETTG + + TE+ + V L +++ ++NP++ I +
Sbjct: 563 YVVVDIETTG---SWSSGDRITEIGAVKVRNHQL--------VEQWHSLINPQRPIPAKI 611
Query: 311 VVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAE 469
V LTG+TN+ +++AP F + A++ ++F+ + VAHN N FDY L +E
Sbjct: 612 VELTGITNQMVRDAPVFHEIADSFMAFMGD----GIFVAHNVN-FDYGFLSSE 659
>UniRef50_A1ZKT0 Cluster: Exonuclease; n=1; Microscilla marina ATCC
23134|Rep: Exonuclease - Microscilla marina ATCC 23134
Length = 245
Score = 51.2 bits (117), Expect = 3e-05
Identities = 36/129 (27%), Positives = 65/129 (50%), Gaps = 1/129 (0%)
Frame = +2
Query: 134 VFFDIETTGLPFQXXNKTKXTELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDVV 313
VFFD+ETTG + ++ + ++ D ++ ++NP I P+V
Sbjct: 8 VFFDLETTGTD---TLNDRIVQIAIIKLAADGTKVEK--------ERLINPTIPIPPEVT 56
Query: 314 VLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAGILL 493
+ G+++E +K+APTF Q A ++ F+ + L +N +FD +L+ E AG++
Sbjct: 57 KVHGVSDEMVKDAPTFHQVAKSLFEFI----RGCDLAGYNHLNFDMPLLIEEFARAGVVF 112
Query: 494 PS-DLLCID 517
P D+ ID
Sbjct: 113 PEPDVQYID 121
>UniRef50_Q81ST0 Cluster: DnaQ family exonuclease/DinG family
helicase, putative; n=10; Bacillus cereus group|Rep:
DnaQ family exonuclease/DinG family helicase, putative -
Bacillus anthracis
Length = 934
Score = 50.8 bits (116), Expect = 3e-05
Identities = 37/118 (31%), Positives = 59/118 (50%)
Frame = +2
Query: 131 YVFFDIETTGLPFQXXNKTKXTELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDV 310
YV D+ETTG ++ K K T++ + V ++ ++ S +NP+++I P +
Sbjct: 5 YVVVDLETTGNSWKD-GKDKITQIAAVVVEDGEI--------LEIFSSFINPKREIPPFI 55
Query: 311 VVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAG 484
LTG+ +K AP F+ A +V EL + VAHN + FD+ L E AG
Sbjct: 56 TELTGIDESMVKQAPLFEDVAPMVV----ELLQGAAFVAHNVH-FDWNFLTEELRQAG 108
>UniRef50_A7A526 Cluster: Putative uncharacterized protein; n=1;
Bifidobacterium adolescentis L2-32|Rep: Putative
uncharacterized protein - Bifidobacterium adolescentis
L2-32
Length = 256
Score = 50.8 bits (116), Expect = 3e-05
Identities = 37/138 (26%), Positives = 65/138 (47%)
Frame = +2
Query: 74 SNSSCKSQKLIHKMVRITTYVFFDIETTGLPFQXXNKTKXTELCFLAVSRDDLDIQSGLP 253
S + KS+ + K + + Y D+ETTG + + E+ + +++G
Sbjct: 67 SVTKMKSKPVKAKDLMVDNYTSIDLETTGF---SPSDDRIVEI-------GAIRVRNG-R 115
Query: 254 PIKKLSFVLNPEKKIHPDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHN 433
P+K+ S ++NP++ + ++ L GLT+ L+N PT Q + F+ L+ HN
Sbjct: 116 PVKRYSQLINPQRPLPEEITRLNGLTDADLRNQPTVDQVLPDFIRFIGN----DTLIGHN 171
Query: 434 GNSFDYKILLAECNDAGI 487
N FD LLA G+
Sbjct: 172 INEFDAAFLLANTTRLGM 189
>UniRef50_A5VK04 Cluster: DnaQ family exonuclease/DinG family
helicase, putative; n=2; Lactobacillus reuteri|Rep: DnaQ
family exonuclease/DinG family helicase, putative -
Lactobacillus reuteri F275
Length = 954
Score = 50.8 bits (116), Expect = 3e-05
Identities = 38/103 (36%), Positives = 52/103 (50%)
Frame = +2
Query: 278 LNPEKKIHPDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKI 457
+NP +KI +V LTG+ ++ ++ AP F+ A I S L E VAHN N FD+
Sbjct: 58 INPREKIPRSIVQLTGIEDKDVRKAPLFEDIAGTIYSLLAE----TTFVAHNVN-FDFPF 112
Query: 458 LLAECNDAGILLPSDLLCIDSLIGFRKILKTTQKSLPLKMNTS 586
L AE AG PS + + +IL T KS L+ TS
Sbjct: 113 LNAELERAG--YPSLSIPAIDTVTLSQILLPTAKSFRLRDLTS 153
>UniRef50_A1RKY8 Cluster: DNA polymerase III, epsilon subunit; n=2;
Shewanella|Rep: DNA polymerase III, epsilon subunit -
Shewanella sp. (strain W3-18-1)
Length = 298
Score = 50.0 bits (114), Expect = 6e-05
Identities = 37/129 (28%), Positives = 62/129 (48%)
Frame = +2
Query: 125 TTYVFFDIETTGLPFQXXNKTKXTELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHP 304
T ++ D ETTGL + + + F +S D +S ++NP K+
Sbjct: 17 TKFIALDAETTGLEAETDKIIEIAAIKFDLLSNDHPVFES----------LINPAVKVPR 66
Query: 305 DVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAG 484
+ +TG+TN+ L + P F + A + +F+ +LP +VA+N FD L AE + G
Sbjct: 67 KITNITGITNKMLVDQPPFAELAQDLKAFIGDLP----IVAYNA-KFDKGFLDAEFANVG 121
Query: 485 ILLPSDLLC 511
I+L + C
Sbjct: 122 IVLNNQYHC 130
>UniRef50_Q26FQ2 Cluster: DNA polymerase III, epsilon subunit; n=1;
Flavobacteria bacterium BBFL7|Rep: DNA polymerase III,
epsilon subunit - Flavobacteria bacterium BBFL7
Length = 466
Score = 49.2 bits (112), Expect = 1e-04
Identities = 37/113 (32%), Positives = 53/113 (46%)
Frame = +2
Query: 131 YVFFDIETTGLPFQXXNKTKXTELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDV 310
Y DIETTG + TE+C + + D + + K S +++PE I +
Sbjct: 8 YCVVDIETTG---NRMTGNRMTEICIVRMRGDTI--------LDKYSSLIDPEVLIPDYI 56
Query: 311 VVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAE 469
LTG+ N + +AP F A I++F K VAHN N FDY +L E
Sbjct: 57 TTLTGIDNAMVASAPVFADVAEEILNF----TKDYIFVAHNVN-FDYNVLRNE 104
>UniRef50_A4KRE5 Cluster: DNA polymerase III, epsilon subunit; n=11;
Francisella tularensis|Rep: DNA polymerase III, epsilon
subunit - Francisella tularensis subsp. holarctica 257
Length = 238
Score = 49.2 bits (112), Expect = 1e-04
Identities = 40/140 (28%), Positives = 63/140 (45%)
Frame = +2
Query: 119 RITTYVFFDIETTGLPFQXXNKTKXTELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKI 298
R++ VF D ETTG ++ N+ + F AV D I L F NP K+
Sbjct: 8 RMSRQVFIDTETTGFDYKIGNRI----IEFGAVEVIDRRITGN-----NLHFYCNPNYKV 58
Query: 299 HPDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECND 478
+ + GLTNE L + P F+ + + ++ FL I A + ++++ L + N
Sbjct: 59 EAGALAIHGLTNEFLADKPLFEDKVDEMIEFLRGAEVIIHNAAFDVPFINWELSLLKNNK 118
Query: 479 AGILLPSDLLCIDSLIGFRK 538
G L + +DSL RK
Sbjct: 119 YGTLEQNVAKIVDSLDLARK 138
>UniRef50_Q8EUK5 Cluster: DNA polymerase III subunit alpha; n=1;
Mycoplasma penetrans|Rep: DNA polymerase III subunit
alpha - Mycoplasma penetrans
Length = 1458
Score = 48.8 bits (111), Expect = 1e-04
Identities = 38/112 (33%), Positives = 56/112 (50%), Gaps = 1/112 (0%)
Frame = +2
Query: 128 TYVFFDIETTGL-PFQXXNKTKXTELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHP 304
TYV FDIETTGL P+ K E F A+ G+ ++ + +NPE+KI
Sbjct: 420 TYVIFDIETTGLSPYYD----KIIE--FGAIK-----YHKGVQ-VESIQMFINPEEKISD 467
Query: 305 DVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKIL 460
+ +T ++NE +K+A K+ I F+ + L+AHNG FD L
Sbjct: 468 KIFAITKISNEDVKDALKIKEALVKIKDFIGD----SVLIAHNGIKFDLPFL 515
>UniRef50_Q3SKJ9 Cluster: DNA polymerase III, epsilon subunit; n=3;
Betaproteobacteria|Rep: DNA polymerase III, epsilon
subunit - Thiobacillus denitrificans (strain ATCC 25259)
Length = 470
Score = 48.8 bits (111), Expect = 1e-04
Identities = 41/136 (30%), Positives = 63/136 (46%)
Frame = +2
Query: 104 IHKMVRITTYVFFDIETTGLPFQXXNKTKXTELCFLAVSRDDLDIQSGLPPIKKLSFVLN 283
+H V F D+ETTG + + TE+ + V D ++ S L +N
Sbjct: 1 MHTTVIPQRLAFVDLETTGA---NAARDRVTEIGVVVVDGDRVETWSTL---------VN 48
Query: 284 PEKKIHPDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILL 463
PE+ I + LTG++NE + +APTF + A+ + L+ +AHN FDY L
Sbjct: 49 PERAIPQFIQQLTGISNEMVADAPTFARVADELAERLDGR----LFIAHNAR-FDYGFLK 103
Query: 464 AECNDAGILLPSDLLC 511
E G +D+LC
Sbjct: 104 HEYQRLGRRFRADVLC 119
>UniRef50_Q6KIN3 Cluster: DNA polymerase III alpha subunit; n=1;
Mycoplasma mobile|Rep: DNA polymerase III alpha subunit
- Mycoplasma mobile
Length = 1433
Score = 48.4 bits (110), Expect = 2e-04
Identities = 47/193 (24%), Positives = 88/193 (45%)
Frame = +2
Query: 11 NVSQKSTCQSFIFFQHANFISSNSSCKSQKLIHKMVRITTYVFFDIETTGLPFQXXNKTK 190
N +K+ + + +N + K+ K + +++ TYV FD+ETTGL
Sbjct: 361 NAVKKANIKGIYGASFSTIFKNNQAIKNLKK-NTLIKNETYVVFDLETTGL------SPI 413
Query: 191 XTELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDVVVLTGLTNESLKNAPTFKQR 370
++ + I +G I L F + P K+I + ++TG+ N+ ++NA + K+
Sbjct: 414 FDDIIEFGAQK----ILNG-KVIDTLQFFVKPNKEISEKITLITGIKNQDVENAISEKEA 468
Query: 371 ANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAGILLPSDLLCIDSLIGFRKILKT 550
I+ F+ + +VAHN +FD + + S+L ID+L+ KI++
Sbjct: 469 LKKILEFMGD----HTVVAHNA-TFDMNFINEKIEKYN-FQESNLQIIDTLV-VSKIIEP 521
Query: 551 TQKSLPLKMNTSK 589
K L+ S+
Sbjct: 522 EAKKFSLENLASR 534
>UniRef50_Q63RW4 Cluster: Possible DNA polymerase/helicase; n=27;
Burkholderia|Rep: Possible DNA polymerase/helicase -
Burkholderia pseudomallei (Pseudomonas pseudomallei)
Length = 381
Score = 48.4 bits (110), Expect = 2e-04
Identities = 41/129 (31%), Positives = 61/129 (47%)
Frame = +2
Query: 125 TTYVFFDIETTGLPFQXXNKTKXTELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHP 304
T F D+ETTG + + TE+ + V+ + + L ++P++ I P
Sbjct: 13 TPLAFVDLETTG---GSAAEHRITEIGVVVVNANGTSTWTTL---------VDPQQPIPP 60
Query: 305 DVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAG 484
+ LTG+T+ ++ APTF A A+ L+ VAHN SFD L AE AG
Sbjct: 61 FIQQLTGITDAMVRGAPTFADIAGALFERLDGK----LFVAHNA-SFDRGFLRAEFERAG 115
Query: 485 ILLPSDLLC 511
I D+LC
Sbjct: 116 IAFNPDVLC 124
>UniRef50_Q83YZ1 Cluster: DNA polymerase III alpha subunit; n=1;
Peanut witches'-broom phytoplasma|Rep: DNA polymerase
III alpha subunit - Peanut witches'-broom phytoplasma
Length = 1492
Score = 48.4 bits (110), Expect = 2e-04
Identities = 53/173 (30%), Positives = 78/173 (45%), Gaps = 6/173 (3%)
Frame = +2
Query: 47 FFQHANFISSNSSCKSQKLIHKMVRITTYVFFDIETTGLPFQXXNKTKXTELCFLAVSRD 226
F + +N K ++ YV DIETTG +KT+ + AV
Sbjct: 377 FIEEKPIFITNQEINLNKFSDFGLKNHNYVVLDIETTGF-----SKTRDRIISIAAVK-- 429
Query: 227 DLDIQSGLPPIKKLSFVLNPEK--KIHPDVVVLTGLTNESLKNAPTFKQRANAIVSFLNE 400
IQ+G I+ ++NP K KI + LT +++E L N P K+ + + F+ +
Sbjct: 430 ---IQNG-KIIEYFDELINPGKDIKISNLIQRLTNISDEILLNKPHIKEILSKFLDFIRD 485
Query: 401 LPKPICLVAHNGNSFDYKILLAECNDAGILLPSDLLCIDSLI----GFRKILK 547
P + LVAHN SFD + L + G+ P L ID+L F KILK
Sbjct: 486 CPNCV-LVAHNA-SFDIEFLQETFKNIGLYWPL-LPVIDTLTLAQKYFNKILK 535
>UniRef50_A0GYI8 Cluster: DNA polymerase III, epsilon subunit; n=2;
Chloroflexus|Rep: DNA polymerase III, epsilon subunit -
Chloroflexus aggregans DSM 9485
Length = 280
Score = 48.0 bits (109), Expect = 2e-04
Identities = 37/117 (31%), Positives = 60/117 (51%)
Frame = +2
Query: 134 VFFDIETTGLPFQXXNKTKXTELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDVV 313
VFFD+ETTGL Q ++ +C LA+ R + +G +++ ++NPE+++ P
Sbjct: 16 VFFDVETTGLDLQNGHR-----ICELAMLRREHRQITG-----QINTLINPERELDPQAS 65
Query: 314 VLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAG 484
+ G+ E L++AP F + +V +L + VAHN FD L E AG
Sbjct: 66 QVNGIRAEDLQSAPRFAELTVQVV----QLSQQAVRVAHN-LPFDESFLNMELARAG 117
>UniRef50_A6EU25 Cluster: DNA polymerase III, epsilon subunit; n=1;
unidentified eubacterium SCB49|Rep: DNA polymerase III,
epsilon subunit - unidentified eubacterium SCB49
Length = 472
Score = 47.6 bits (108), Expect = 3e-04
Identities = 37/133 (27%), Positives = 60/133 (45%), Gaps = 1/133 (0%)
Frame = +2
Query: 116 VRITTYVFFDIETTGLPFQXXNKTKXTELCFLAVSRDDL-DIQSGLPPIKKLSFVLNPEK 292
++ + D+ETTG + + TE+C + V ++ D+ S L +NPE
Sbjct: 3 IKTEKFTVIDVETTG----GVGQGRMTEICIITVENMEIVDVWSSL---------INPEI 49
Query: 293 KIHPDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAEC 472
I + LTG+T++ + +AP F + + + E + VAHN N FDY L E
Sbjct: 50 YIPQHITALTGITDQMVTDAPRFCD----VAAIIEEKTRDAIFVAHNVN-FDYGFLKKEF 104
Query: 473 NDAGILLPSDLLC 511
+ G LC
Sbjct: 105 DLIGASFSRKKLC 117
>UniRef50_A4X9Y0 Cluster: DNA polymerase III, epsilon subunit; n=3;
Actinomycetales|Rep: DNA polymerase III, epsilon subunit
- Salinispora tropica CNB-440
Length = 607
Score = 47.6 bits (108), Expect = 3e-04
Identities = 46/140 (32%), Positives = 66/140 (47%)
Frame = +2
Query: 125 TTYVFFDIETTGLPFQXXNKTKXTELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHP 304
TT+V D+ETTG + TE+ + V + Q G+ L+ ++NP + P
Sbjct: 52 TTFVVVDLETTG---GTPDGGGITEIGAVKVRGGE---QLGV-----LATLVNPGTPVPP 100
Query: 305 DVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAG 484
V VLTG+T L AP + + SFL LP LVAHN +D L A C G
Sbjct: 101 FVTVLTGITQSMLLPAPPITE---VLPSFLEFLPPDAVLVAHNA-PYDVGFLKAACAAHG 156
Query: 485 ILLPSDLLCIDSLIGFRKIL 544
PS + +D+ R++L
Sbjct: 157 YRWPSPRV-LDTAALARRVL 175
>UniRef50_A3XPR4 Cluster: Nuclease subunit Cho of the excinuclease
complex; n=2; Flavobacteriaceae|Rep: Nuclease subunit
Cho of the excinuclease complex - Leeuwenhoekiella
blandensis MED217
Length = 519
Score = 47.6 bits (108), Expect = 3e-04
Identities = 37/127 (29%), Positives = 62/127 (48%)
Frame = +2
Query: 131 YVFFDIETTGLPFQXXNKTKXTELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDV 310
+ D+ETTG + K TE+C + +Q G I + + ++NP ++I +
Sbjct: 50 FAIIDVETTGGGIKG---NKITEICIIV-------LQEG-KEINRFASLVNPGREIPLYI 98
Query: 311 VVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAGIL 490
LTG+ + +++AP F + A I + L + VAHN FDY ++ AE +AG+
Sbjct: 99 EKLTGINDRMVEDAPYFDELAPQI----DALTQDCIFVAHN-VGFDYNVVRAEFKEAGLD 153
Query: 491 LPSDLLC 511
LC
Sbjct: 154 FNRKRLC 160
>UniRef50_Q60WS9 Cluster: Putative uncharacterized protein CBG19000;
n=1; Caenorhabditis briggsae|Rep: Putative
uncharacterized protein CBG19000 - Caenorhabditis
briggsae
Length = 392
Score = 47.6 bits (108), Expect = 3e-04
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 4/74 (5%)
Frame = +2
Query: 356 TFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAGIL----LPSDLLCIDSL 523
+FK+ A++ F N PKP LV HN +D++++ E +L +P D+ +DS
Sbjct: 188 SFKEEWPAVIQFFNSFPKPALLVGHNAIKYDFRVIYGELQRNDLLEDYGIPPDVYFVDSY 247
Query: 524 IGFRKILKTTQKSL 565
+K+ +T K L
Sbjct: 248 WMAKKVEETIVKEL 261
>UniRef50_Q9JYS6 Cluster: DNA polymerase III, epsilon subunit; n=3;
Neisseria meningitidis|Rep: DNA polymerase III, epsilon
subunit - Neisseria meningitidis serogroup B
Length = 470
Score = 47.2 bits (107), Expect = 4e-04
Identities = 31/80 (38%), Positives = 44/80 (55%)
Frame = +2
Query: 272 FVLNPEKKIHPDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDY 451
+++NP+K I V LTG+++ + +AP F + A + S L K LVAHN + FDY
Sbjct: 65 WLVNPQKPIPQFVAGLTGISDGMVADAPVFAEIAGELFSVL----KGCVLVAHN-SRFDY 119
Query: 452 KILLAECNDAGILLPSDLLC 511
L E + AGI S LC
Sbjct: 120 TFLKHEFHRAGIGFSSPALC 139
>UniRef50_Q1ART4 Cluster: DNA polymerase III, epsilon subunit; n=1;
Rubrobacter xylanophilus DSM 9941|Rep: DNA polymerase
III, epsilon subunit - Rubrobacter xylanophilus (strain
DSM 9941 / NBRC 16129)
Length = 560
Score = 47.2 bits (107), Expect = 4e-04
Identities = 40/127 (31%), Positives = 57/127 (44%)
Frame = +2
Query: 116 VRITTYVFFDIETTGLPFQXXNKTKXTELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKK 295
+R YV FD+ETTG + TEL L + R + + + S ++NP +
Sbjct: 28 LREAPYVVFDLETTG---SSAREGGITELGALKLVRGRV--------VDRFSTLVNPGRP 76
Query: 296 IHPDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECN 475
I P V LTG+T+E + AP A ++ E + LVAHN FD L A
Sbjct: 77 IEPFVARLTGITDEMVSGAPP----AREVIPRFEEFAEGSVLVAHNA-GFDCSFLAAARG 131
Query: 476 DAGILLP 496
G+ P
Sbjct: 132 GRGLPNP 138
>UniRef50_A7CWU9 Cluster: DNA-directed DNA polymerase; n=1;
Opitutaceae bacterium TAV2|Rep: DNA-directed DNA
polymerase - Opitutaceae bacterium TAV2
Length = 197
Score = 47.2 bits (107), Expect = 4e-04
Identities = 31/118 (26%), Positives = 54/118 (45%)
Frame = +2
Query: 134 VFFDIETTGLPFQXXNKTKXTELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDVV 313
V FD+ETTG + ++ +A R + G + S ++P + + +
Sbjct: 4 VIFDLETTGF------SPRWNDIIQIAAVR----LVDGRISDETFSTYVSPRRPVPDHIT 53
Query: 314 VLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAGI 487
LTG+T+ + +AP A F+ ++ P LVAHNG+ FD + + C G+
Sbjct: 54 ELTGITDADVADAPETSDALRAFARFVGDVG-PTTLVAHNGHRFDMRFIAESCTLHGL 110
>UniRef50_A3UIB9 Cluster: DNA polymerase III, epsilon subunit; n=6;
Alphaproteobacteria|Rep: DNA polymerase III, epsilon
subunit - Oceanicaulis alexandrii HTCC2633
Length = 236
Score = 47.2 bits (107), Expect = 4e-04
Identities = 38/117 (32%), Positives = 58/117 (49%)
Frame = +2
Query: 134 VFFDIETTGLPFQXXNKTKXTELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDVV 313
+ FD ETTGL + ++ TEL + V +D+ +P K L ++NPE+ I +V
Sbjct: 6 IIFDTETTGLDPRGGDRV--TELGCVEV----IDL---IPTGKDLRILINPERDIPAEVT 56
Query: 314 VLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAG 484
+TG T E LK+ P F + + + F+ + LVAHN FD + E G
Sbjct: 57 AVTGHTWEMLKDEPKFAEIVDQFLDFIED----STLVAHNA-MFDMGFINMELERCG 108
>UniRef50_Q10384 Cluster: Uncharacterized protein Rv2191/MT2247;
n=18; Actinomycetales|Rep: Uncharacterized protein
Rv2191/MT2247 - Mycobacterium tuberculosis
Length = 645
Score = 46.8 bits (106), Expect = 5e-04
Identities = 39/133 (29%), Positives = 59/133 (44%), Gaps = 1/133 (0%)
Frame = +2
Query: 116 VRITTYVFFDIETTGLPFQXXNKTKXTELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKK 295
+R TT+V D+ETTG + T + + + G + + + ++NP+
Sbjct: 38 LRETTFVVVDLETTGGRTTGNDATPPDAITEIGAVK-----VCGGAVLGEFATLVNPQHS 92
Query: 296 IHPDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECN 475
I P +V LTG+T + NAPT +A++ E LVAHN FD L A
Sbjct: 93 IPPQIVRLTGITTAMVGNAPTI----DAVLPMFFEFAGDSVLVAHNA-GFDIGFLRAAAR 147
Query: 476 DAGILLPS-DLLC 511
I P +LC
Sbjct: 148 RCDITWPQPQVLC 160
>UniRef50_Q01KC6 Cluster: H0215F08.4 protein; n=4; Oryza sativa|Rep:
H0215F08.4 protein - Oryza sativa (Rice)
Length = 260
Score = 46.4 bits (105), Expect = 7e-04
Identities = 40/147 (27%), Positives = 69/147 (46%), Gaps = 3/147 (2%)
Frame = +2
Query: 128 TYVFFDIETTGLPFQXXNKTKXTELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPD 307
T + FD+ETTG F ++ LC L+ ++ ++ + P + + + KI D
Sbjct: 61 TILVFDLETTGY-FHKDHRIVEFALCDLSGGKNST-FETLVNPERTVPDYVEHLIKIGTD 118
Query: 308 VVVLTGLTNESLKNAPTFKQRANAIVSFLN--ELP-KPICLVAHNGNSFDYKILLAECND 478
+V G+ P F +++F+ + P KP+ VAHN FD + L E +
Sbjct: 119 LVCRPGI--------PRFSDVIPLLLAFVRSRQAPGKPVLWVAHNAKQFDARFLAQEFDR 170
Query: 479 AGILLPSDLLCIDSLIGFRKILKTTQK 559
LP+D L D+L+ +K++K K
Sbjct: 171 CSAPLPADWLFFDTLLLAKKMVKAEGK 197
>UniRef50_Q7NZA2 Cluster: Probable DNA-directed DNA polymerase III;
n=1; Chromobacterium violaceum|Rep: Probable
DNA-directed DNA polymerase III - Chromobacterium
violaceum
Length = 481
Score = 46.0 bits (104), Expect = 0.001
Identities = 27/85 (31%), Positives = 47/85 (55%)
Frame = +2
Query: 257 IKKLSFVLNPEKKIHPDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNG 436
+++LS+++NP + I P + +TG++NE + AP F +A+ ++ L + L+AHN
Sbjct: 36 VERLSWLVNPGQPIPPFIENMTGISNEMVAGAPPFSAQADELLDRL----QGRLLLAHNA 91
Query: 437 NSFDYKILLAECNDAGILLPSDLLC 511
FDY L E G+ + LC
Sbjct: 92 R-FDYGFLKNEFRRHGLRFQARALC 115
>UniRef50_Q7NC15 Cluster: PolC; n=1; Mycoplasma gallisepticum|Rep:
PolC - Mycoplasma gallisepticum
Length = 1501
Score = 46.0 bits (104), Expect = 0.001
Identities = 56/187 (29%), Positives = 86/187 (45%), Gaps = 6/187 (3%)
Frame = +2
Query: 50 FQHANFISSNSSCKSQKLIHKMVRITTYVFFDIETTGLPFQXXNKTKXTELCFLAVSRDD 229
F NFI N+ K KL ++V FDIETTGL + E+ + V + +
Sbjct: 397 FDDRNFIVKNN--KDLKLDQ-----LSFVIFDIETTGL---NAYYEQIIEIAAVRV-KAE 445
Query: 230 LDI---QSGLPPIKKLSFVLNPEKKIHPDVVVLTGLTNESLKNAPTFKQRANAIVSFLNE 400
L++ Q I K ++ +K + LTGL + LK+A K + F+N
Sbjct: 446 LNVTNHQLEFVQIGKFEKLIKNKKPLSKFTTQLTGLKDSDLKDAQDEK---TVLEEFVNF 502
Query: 401 LPKPICLVAHNGNSFDYKILLAECNDAGILLPSDLLCIDSL-IGFR--KILKTTQKSLPL 571
+ K LVAHNG FD+ I + D L P D +DSL + ++ + + T ++L L
Sbjct: 503 IQKDDVLVAHNGIDFDF-IWINTKLDKYKLKPLDNPMLDSLRLAYQLYQFKRYTLENLSL 561
Query: 572 KMNTSKD 592
K+ D
Sbjct: 562 KLGYEYD 568
>UniRef50_Q64S03 Cluster: DNA polymerase III epsilon chain; n=5;
Bacteroidetes|Rep: DNA polymerase III epsilon chain -
Bacteroides fragilis
Length = 257
Score = 46.0 bits (104), Expect = 0.001
Identities = 42/141 (29%), Positives = 66/141 (46%), Gaps = 1/141 (0%)
Frame = +2
Query: 134 VFFDIETTGLPFQXXNKTKXTELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDVV 313
VFFD+ETTG N + E+C+L V +G K L +NPE I +
Sbjct: 10 VFFDLETTGTNI---NSDRIVEICYLKV------YPNGNEESKTLR--INPEMPIPAESS 58
Query: 314 VLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAGILL 493
+ G+ + + + PTFK+ A +I N++ + L N N FD +L E AG+ +
Sbjct: 59 AVHGIYDADVADCPTFKEVAKSIA---NDI-EGCDLAGFNSNRFDIPVLAEEFLRAGVDI 114
Query: 494 P-SDLLCIDSLIGFRKILKTT 553
S +D + F K+ + T
Sbjct: 115 DMSKRKFVDVQVIFHKMEQRT 135
>UniRef50_A1ZC44 Cluster: DNA polymerase III, epsilon subunit; n=1;
Microscilla marina ATCC 23134|Rep: DNA polymerase III,
epsilon subunit - Microscilla marina ATCC 23134
Length = 463
Score = 46.0 bits (104), Expect = 0.001
Identities = 38/127 (29%), Positives = 57/127 (44%)
Frame = +2
Query: 131 YVFFDIETTGLPFQXXNKTKXTELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDV 310
Y D+ETTGL K TE+ A+ + D G + ++NPE I +
Sbjct: 2 YTIIDVETTGL---RPTDDKITEI---AIYKHD-----GESVVDSFHSLVNPECYISDRI 50
Query: 311 VVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAGIL 490
+TG+TN+ + NAP F + A I++ + + VAHN + FDY + E G
Sbjct: 51 TQITGITNDMVANAPKFYEIAKDILA----ITEGTVFVAHNAH-FDYGFVREEFKALGYK 105
Query: 491 LPSDLLC 511
LC
Sbjct: 106 FTRKTLC 112
>UniRef50_Q8EQD9 Cluster: ATP-dependent DNA helicase; n=1;
Oceanobacillus iheyensis|Rep: ATP-dependent DNA helicase
- Oceanobacillus iheyensis
Length = 939
Score = 45.2 bits (102), Expect = 0.002
Identities = 35/119 (29%), Positives = 58/119 (48%)
Frame = +2
Query: 131 YVFFDIETTGLPFQXXNKTKXTELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDV 310
+V D+ETTG K E+ + + D++ I + NP + I P +
Sbjct: 4 FVVIDLETTG--HAPSKNDKIIEIGMVIIEGDEI--------IDTKTTFFNPGQPIPPFI 53
Query: 311 VVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAGI 487
LTG++++ + +AP F ++A +I S L + ++AHN N FD L AE + GI
Sbjct: 54 TNLTGISDDDVADAPLFTEKALSIKSILED----SYIIAHNVN-FDLGFLNAELKENGI 107
>UniRef50_Q81Y85 Cluster: DNA polymerase III, epsilon subunit,
putative; n=10; Bacillus cereus group|Rep: DNA
polymerase III, epsilon subunit, putative - Bacillus
anthracis
Length = 315
Score = 45.2 bits (102), Expect = 0.002
Identities = 54/197 (27%), Positives = 91/197 (46%)
Frame = +2
Query: 131 YVFFDIETTGLPFQXXNKTKXTELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDV 310
YV D ETTG F N K ++ + +L Q +S+V NP++ I +
Sbjct: 10 YVVIDFETTG--FNPYND-KIIQVAAVKYRNHELVDQF-------VSYV-NPKRPIPDRI 58
Query: 311 VVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAGIL 490
+ LTG+TN + +APT ++ ++FL+ +VAHN SFD + L + N G+
Sbjct: 59 MSLTGITNYRVSDAPTIEEVLPLFLAFLH----TNVIVAHNA-SFDMRFLKSNVNMLGLP 113
Query: 491 LPSDLLCIDSLIGFRKILKTTQKSLPLKMNTSKDDSASELLWPELDVSTENWEEIDNLCA 670
P + + ID++ +K +K K+ T K +L L S +++ A
Sbjct: 114 EPKNKV-IDTVFLAKKYMKHAPNH---KLETLK-----RMLGIRLS-SHNAFDDCITCAA 163
Query: 671 SFSKDTCIDDEKSKKEN 721
+ K I++E +K N
Sbjct: 164 VYQKCASIEEEAKRKSN 180
>UniRef50_Q1MZX4 Cluster: Putative uncharacterized protein; n=1;
Oceanobacter sp. RED65|Rep: Putative uncharacterized
protein - Oceanobacter sp. RED65
Length = 738
Score = 45.2 bits (102), Expect = 0.002
Identities = 37/127 (29%), Positives = 56/127 (44%)
Frame = +2
Query: 131 YVFFDIETTGLPFQXXNKTKXTELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDV 310
YV D+ETTG + + TE+ + V ++ + + ++NP + I +
Sbjct: 573 YVIVDVETTG---GRKEQHRVTEVGMVKVLNGEI--------VDEWQSLINPMRHIPQSI 621
Query: 311 VVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAGIL 490
LTG++NE + NAP F A+ I F VAHN N FDY +E G
Sbjct: 622 TRLTGISNEMVSNAPVFDDVADEIAEFC----AGSVFVAHNVN-FDYGFFRSEFERLGRR 676
Query: 491 LPSDLLC 511
+ LC
Sbjct: 677 FHAPKLC 683
>UniRef50_A5EY86 Cluster: DNA polymerase III, epsilon subunit; n=1;
Dichelobacter nodosus VCS1703A|Rep: DNA polymerase III,
epsilon subunit - Dichelobacter nodosus (strain
VCS1703A)
Length = 233
Score = 45.2 bits (102), Expect = 0.002
Identities = 33/117 (28%), Positives = 55/117 (47%)
Frame = +2
Query: 134 VFFDIETTGLPFQXXNKTKXTELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDVV 313
V FD ETTG+ F+ NK + + + +++ +P LNPE+ + P
Sbjct: 6 VIFDTETTGMNFESDNKAEGHRIIEIGC----VELIDRVPTEHYFHCYLNPEQPVDPQAF 61
Query: 314 VLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAG 484
+ G+++E L + P FK ++L + LVAHN +FD + + E AG
Sbjct: 62 KVHGISDEFLADKPFFKDVLPEFEAYLASADE---LVAHN-IAFDRQFIDRELQLAG 114
>UniRef50_Q5P3L6 Cluster: Nuclease subunit Cho of the excinuclease
complex; n=2; Azoarcus|Rep: Nuclease subunit Cho of the
excinuclease complex - Azoarcus sp. (strain EbN1)
(Aromatoleum aromaticum (strain EbN1))
Length = 469
Score = 44.8 bits (101), Expect = 0.002
Identities = 35/126 (27%), Positives = 59/126 (46%)
Frame = +2
Query: 134 VFFDIETTGLPFQXXNKTKXTELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDVV 313
V D+ETTG + TE+ L + R ++ + + ++NPE+ I +
Sbjct: 8 VLIDVETTGA---NPVSDRVTEIAVLRIERGEI--------VGRWESLVNPERPIPALIQ 56
Query: 314 VLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAGILL 493
L G+T+E + APTF + A+++ L+ VAHN FDY + E + G
Sbjct: 57 RLVGITDEMVAGAPTFAELADSVRGHLD----GAVFVAHNAR-FDYGFIRNEFSRLGQQF 111
Query: 494 PSDLLC 511
+ +LC
Sbjct: 112 EASVLC 117
>UniRef50_Q1YU82 Cluster: DNA polymerase III, epsilon subunit; n=1;
gamma proteobacterium HTCC2207|Rep: DNA polymerase III,
epsilon subunit - gamma proteobacterium HTCC2207
Length = 528
Score = 44.8 bits (101), Expect = 0.002
Identities = 30/81 (37%), Positives = 42/81 (51%)
Frame = +2
Query: 269 SFVLNPEKKIHPDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFD 448
SFV +PE + P + LTG+ L+ AP F + A ++++LN+ LVAHN FD
Sbjct: 60 SFV-DPETVLPPFIQKLTGIAPSMLRGAPLFSEVAETLLTYLNDR----TLVAHNAR-FD 113
Query: 449 YKILLAECNDAGILLPSDLLC 511
Y L E GI + LC
Sbjct: 114 YGFLKNEFQRIGISYNAKPLC 134
>UniRef50_A2U0G0 Cluster: DNA Pol III Epsilon Chain; n=2;
Polaribacter|Rep: DNA Pol III Epsilon Chain -
Polaribacter dokdonensis MED152
Length = 275
Score = 44.8 bits (101), Expect = 0.002
Identities = 37/118 (31%), Positives = 55/118 (46%)
Frame = +2
Query: 134 VFFDIETTGLPFQXXNKTKXTELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDVV 313
VFFD+ETTG+ + E+ L V +G K ++++NPE +I
Sbjct: 10 VFFDLETTGVNIATD---RIVEISILKV------FPNGNKESK--TWLVNPEIEIPQGAT 58
Query: 314 VLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAGI 487
+ G+TNE + PTFK+ A + +E+ L N N FD +L E AGI
Sbjct: 59 DVHGITNEKVVTEPTFKELAGKV----SEMIAGCDLAGFNSNRFDIPLLAEELMRAGI 112
>UniRef50_A0TFD8 Cluster: DNA polymerase III, epsilon subunit; n=4;
Betaproteobacteria|Rep: DNA polymerase III, epsilon
subunit - Burkholderia ambifaria MC40-6
Length = 229
Score = 44.8 bits (101), Expect = 0.002
Identities = 35/128 (27%), Positives = 56/128 (43%)
Frame = +2
Query: 128 TYVFFDIETTGLPFQXXNKTKXTELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPD 307
T D ETTGL ++ TE+ + + ++ + + ++N ++I D
Sbjct: 27 TVAVLDFETTGLSPNLGDRA--TEIAVILLRDGEI--------VDRYQSLMNAGRRIPSD 76
Query: 308 VVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAGI 487
VV LTG+TNE + +AP Q +F+ P +VAHN FD + AE G+
Sbjct: 77 VVALTGITNEMIASAPPVSQVMKEAAAFVGNHP----VVAHNA-GFDKRFWQAELGMLGM 131
Query: 488 LLPSDLLC 511
C
Sbjct: 132 AAEHAFAC 139
>UniRef50_Q682U6 Cluster: Putative uncharacterized protein
At5g26940; n=3; Arabidopsis thaliana|Rep: Putative
uncharacterized protein At5g26940 - Arabidopsis thaliana
(Mouse-ear cress)
Length = 316
Score = 44.8 bits (101), Expect = 0.002
Identities = 29/102 (28%), Positives = 53/102 (51%), Gaps = 10/102 (9%)
Frame = +2
Query: 296 IHPDVVVLT-----GLTNESL--KNAPTFKQRANAIVSFLNELPKP---ICLVAHNGNSF 445
++P VV +T G+ N+ + P ++ + ++ KP + LVAHNG SF
Sbjct: 148 VNPGVVPITNAHIHGIRNDMVCRPEVPRMEELIPIFLRYVESRQKPGGYVMLVAHNGKSF 207
Query: 446 DYKILLAECNDAGILLPSDLLCIDSLIGFRKILKTTQKSLPL 571
D++ L+ E N +P + L +DSL R+ +K+ + ++ L
Sbjct: 208 DFQFLINEFNRCSYEIPHNWLLLDSLPLARENMKSVEPTVKL 249
>UniRef50_Q14P64 Cluster: Probable dna polymerase III alpha subunit
protein; n=1; Spiroplasma citri|Rep: Probable dna
polymerase III alpha subunit protein - Spiroplasma citri
Length = 1453
Score = 44.4 bits (100), Expect = 0.003
Identities = 40/126 (31%), Positives = 58/126 (46%)
Frame = +2
Query: 107 HKMVRITTYVFFDIETTGLPFQXXNKTKXTELCFLAVSRDDLDIQSGLPPIKKLSFVLNP 286
H +R YV FD+ETTGL + E F AV D + SG I ++ + P
Sbjct: 402 HHNLRTAKYVIFDLETTGL---SSGYDEIIE--FGAVIMDGI---SGERQI--INHLFKP 451
Query: 287 EKKIHPDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLA 466
K+ LTG+T+E L + PTF + + I+ + K L+AHN FD + +
Sbjct: 452 SVKLSSFTTELTGITDELLADKPTFIESIDQILEYF----KDAILIAHNA-EFDLGFIQS 506
Query: 467 ECNDAG 484
AG
Sbjct: 507 WLKKAG 512
>UniRef50_A6ECG9 Cluster: DNA polymerase III, epsilon subunit; n=1;
Pedobacter sp. BAL39|Rep: DNA polymerase III, epsilon
subunit - Pedobacter sp. BAL39
Length = 456
Score = 44.4 bits (100), Expect = 0.003
Identities = 36/127 (28%), Positives = 57/127 (44%)
Frame = +2
Query: 131 YVFFDIETTGLPFQXXNKTKXTELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDV 310
Y DIETTG + TE+ L + +G ++ ++NP + I +
Sbjct: 3 YAVVDIETTG---GHASGNGITEISIL--------VHNGHSIVQNYETLINPGQYIPAHI 51
Query: 311 VVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAGIL 490
LTG++NE ++ AP+F Q A + L++ VAHN N FD+ + + G
Sbjct: 52 EALTGISNEMVETAPSFNQVAAEVYQLLHDK----IFVAHNVN-FDFSFIRHQLGVCGYE 106
Query: 491 LPSDLLC 511
L LC
Sbjct: 107 LSCRKLC 113
>UniRef50_A4AXV6 Cluster: Putative uncharacterized protein; n=2;
Proteobacteria|Rep: Putative uncharacterized protein -
Alteromonas macleodii 'Deep ecotype'
Length = 715
Score = 44.4 bits (100), Expect = 0.003
Identities = 34/113 (30%), Positives = 56/113 (49%)
Frame = +2
Query: 131 YVFFDIETTGLPFQXXNKTKXTELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDV 310
YV DIETTG + + TE+ + + G + + +LNP+++I +
Sbjct: 543 YVVVDIETTG---GNNSYNRITEIGMVKLV--------GGKEVDRFQTLLNPQRRIPSSI 591
Query: 311 VVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAE 469
LTG++++ + +AP F + A+ I SF + VAHN N FDY + E
Sbjct: 592 TRLTGISDDMVADAPLFAEVADHIASFTED----AVFVAHNVN-FDYGFIKQE 639
>UniRef50_A3HRT4 Cluster: Putative uncharacterized protein; n=1;
Algoriphagus sp. PR1|Rep: Putative uncharacterized
protein - Algoriphagus sp. PR1
Length = 456
Score = 44.4 bits (100), Expect = 0.003
Identities = 42/138 (30%), Positives = 63/138 (45%)
Frame = +2
Query: 131 YVFFDIETTGLPFQXXNKTKXTELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDV 310
+ DIETTG + TE+ L I G I++ ++NPE+ I +
Sbjct: 3 FAIVDIETTG---GAASTCGITEIAIL--------IHDGEKVIEEFESLINPEQDIPTYI 51
Query: 311 VVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAGIL 490
LTG+ N + +APTF++ ++ + L+ VAH+ N FDY + A N G
Sbjct: 52 TGLTGIDNSMVSDAPTFEELSDKLWDLLHGR----VFVAHSVN-FDYGFVRACFNAIGRE 106
Query: 491 LPSDLLCIDSLIGFRKIL 544
D LC L RKI+
Sbjct: 107 FKVDKLCTVRLA--RKII 122
>UniRef50_Q9CEK5 Cluster: ATP-dependent helicase DinG; n=3;
Lactococcus lactis|Rep: ATP-dependent helicase DinG -
Lactococcus lactis subsp. lactis (Streptococcus lactis)
Length = 794
Score = 44.0 bits (99), Expect = 0.004
Identities = 32/117 (27%), Positives = 60/117 (51%)
Frame = +2
Query: 257 IKKLSFVLNPEKKIHPDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNG 436
++ S +NP + + P + LTGL+++ LK AP F + + + + EL VAHN
Sbjct: 38 VETFSTEVNPHEPLLPRISELTGLSDKQLKTAPEFSE----VAAKVRELLTDSVFVAHNA 93
Query: 437 NSFDYKILLAECNDAGILLPSDLLCIDSLIGFRKILKTTQKSLPLKMNTSKDDSASE 607
FDY +L +AG+ +++L +D+ + ++ T + L+ + K D A +
Sbjct: 94 R-FDYGLLEKSFLNAGLEF-NEMLRVDT-VDLARVFYPTFEKYGLESLSEKLDLAHD 147
>UniRef50_A1G6Z7 Cluster: DNA polymerase III, epsilon subunit; n=1;
Salinispora arenicola CNS205|Rep: DNA polymerase III,
epsilon subunit - Salinispora arenicola CNS205
Length = 616
Score = 44.0 bits (99), Expect = 0.004
Identities = 45/140 (32%), Positives = 66/140 (47%)
Frame = +2
Query: 125 TTYVFFDIETTGLPFQXXNKTKXTELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHP 304
TT+V D+ETTG + TE+ + V + Q G+ L+ ++NP + P
Sbjct: 61 TTFVVVDLETTG---GAPDGGGITEIGAVKVRGGE---QLGV-----LATLVNPGVPVPP 109
Query: 305 DVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAG 484
V VLTG+T L AP+ A + SFL L LVAHN +D L A C G
Sbjct: 110 FVTVLTGITQAMLLPAPSI---AQVLPSFLEFLSADAVLVAHNA-PYDVGFLKAACAAHG 165
Query: 485 ILLPSDLLCIDSLIGFRKIL 544
P+ + +D+ R++L
Sbjct: 166 HRWPNPRI-LDTAALARRVL 184
>UniRef50_O83649 Cluster: DNA polymerase III subunit epsilon; n=1;
Treponema pallidum|Rep: DNA polymerase III subunit
epsilon - Treponema pallidum
Length = 215
Score = 44.0 bits (99), Expect = 0.004
Identities = 41/122 (33%), Positives = 59/122 (48%)
Frame = +2
Query: 104 IHKMVRITTYVFFDIETTGLPFQXXNKTKXTELCFLAVSRDDLDIQSGLPPIKKLSFVLN 283
+H+ V T FD ETTGL K E + + D + G+ I + S ++
Sbjct: 9 VHEHVAFTA---FDTETTGL--------KAEEDRIIEIGAVTFD-RKGI--IARFSTLIF 54
Query: 284 PEKKIHPDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILL 463
P++ I PDV + +T++ L N P F + IVS + K LVAHN N FD + L
Sbjct: 55 PDRAIPPDVSKINHITDDMLVNKPRFCE----IVSDFSRFIKGTVLVAHNAN-FDVEFLN 109
Query: 464 AE 469
AE
Sbjct: 110 AE 111
>UniRef50_Q5FJX1 Cluster: ATP-dependent DNA helicase; n=5;
Lactobacillus|Rep: ATP-dependent DNA helicase -
Lactobacillus acidophilus
Length = 927
Score = 43.2 bits (97), Expect = 0.007
Identities = 28/76 (36%), Positives = 39/76 (51%)
Frame = +2
Query: 257 IKKLSFVLNPEKKIHPDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNG 436
+K SF++NP ++I VV LTG++NE ++ F A IVS L + VAHN
Sbjct: 42 VKTYSFLINPHREIPQSVVNLTGISNEDVQKQKDFDYYAPKIVSILQD----TVFVAHNV 97
Query: 437 NSFDYKILLAECNDAG 484
+ FD L E G
Sbjct: 98 D-FDLPFLNYELTQHG 112
>UniRef50_Q2B3X2 Cluster: ATP-dependent DNA helicase; n=2;
Bacillus|Rep: ATP-dependent DNA helicase - Bacillus sp.
NRRL B-14911
Length = 934
Score = 43.2 bits (97), Expect = 0.007
Identities = 40/118 (33%), Positives = 56/118 (47%)
Frame = +2
Query: 131 YVFFDIETTGLPFQXXNKTKXTELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDV 310
YV D+ETTG + +K + F AV + G I + S +LNP K+I +
Sbjct: 5 YVVVDLETTGNSAKKGDKI----IQFAAV------VMEGGKIIDQYSSLLNPGKEIPAFI 54
Query: 311 VVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAG 484
LTGL + + +AP F + A ++ EL + VAHN FD L E DAG
Sbjct: 55 EELTGLNDSMVSDAPVFAEIAPKVM----ELLEDAYFVAHN-VLFDLSFLQEELLDAG 107
>UniRef50_A3JBF5 Cluster: Putative uncharacterized protein; n=2;
Marinobacter|Rep: Putative uncharacterized protein -
Marinobacter sp. ELB17
Length = 483
Score = 43.2 bits (97), Expect = 0.007
Identities = 34/132 (25%), Positives = 61/132 (46%)
Frame = +2
Query: 116 VRITTYVFFDIETTGLPFQXXNKTKXTELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKK 295
++ TT+ F D+ETTG + TE+ + + + ++NP+ +
Sbjct: 8 LKTTTFAFLDLETTG---GSVATDRITEI--------GIQFWRAGECVGQWQTLVNPKTR 56
Query: 296 IHPDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECN 475
I P + LTG++N + +AP F+ A+ + L+ + VAHN FDY + E
Sbjct: 57 ISPFIEQLTGISNAMVADAPLFEDIADELEQRLD----GVVFVAHNAR-FDYGFVKGEFR 111
Query: 476 DAGILLPSDLLC 511
G + + +LC
Sbjct: 112 RLGRMFVAKVLC 123
>UniRef50_A2UA15 Cluster: DNA polymerase III, epsilon subunit; n=1;
Bacillus coagulans 36D1|Rep: DNA polymerase III, epsilon
subunit - Bacillus coagulans 36D1
Length = 555
Score = 43.2 bits (97), Expect = 0.007
Identities = 40/118 (33%), Positives = 56/118 (47%)
Frame = +2
Query: 131 YVFFDIETTGLPFQXXNKTKXTELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDV 310
YV D+ETTG + ++ + F AV + +I++ SFV NPEK + P +
Sbjct: 4 YVVVDLETTGNSAKKGDRI----IQFSAVVVEGREIKTQFT-----SFV-NPEKPVPPFI 53
Query: 311 VVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAG 484
LTG+ N L+ AP F + A I+ L + VAHN FD L E AG
Sbjct: 54 SELTGIDNGMLEEAPVFSEIAPRIMEILED----SIFVAHN-VLFDLPFLQQELKAAG 106
>UniRef50_A4G2P4 Cluster: Putative DNA polymerase/helicase; n=1;
Herminiimonas arsenicoxydans|Rep: Putative DNA
polymerase/helicase - Herminiimonas arsenicoxydans
Length = 193
Score = 42.7 bits (96), Expect = 0.009
Identities = 41/127 (32%), Positives = 60/127 (47%), Gaps = 1/127 (0%)
Frame = +2
Query: 134 VFFDIETTGLPFQXXNKTKXTELCFLAVSRD-DLDIQSGLPPIKKLSFVLNPEKKIHPDV 310
+F D+ETTG + TE+ + V+ D D+D S SFV NP + I +
Sbjct: 8 IFIDLETTGANLI---NDRITEIGIVTVNADGDIDRWS--------SFV-NPGRPIPSFI 55
Query: 311 VVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAGIL 490
LTG+++ + APTF+ A+ + E + +AHN FDY L AG
Sbjct: 56 QDLTGISDRMVATAPTFETLADTV----RERLEDGLFIAHNAR-FDYGFLHHALARAGHA 110
Query: 491 LPSDLLC 511
L D+LC
Sbjct: 111 LSIDVLC 117
>UniRef50_A0Y3N2 Cluster: Putative uncharacterized protein; n=2;
Alteromonadales|Rep: Putative uncharacterized protein -
Alteromonadales bacterium TW-7
Length = 745
Score = 42.7 bits (96), Expect = 0.009
Identities = 39/127 (30%), Positives = 59/127 (46%)
Frame = +2
Query: 131 YVFFDIETTGLPFQXXNKTKXTELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDV 310
Y DIETTG + N+ TE+ + V + I + ++NP++ I +
Sbjct: 579 YSVVDIETTG-GLKGGNRV--TEIGIVKVQHGKV--------IDTWTTLINPQRHIPSFI 627
Query: 311 VVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAGIL 490
LTG+++ + NAP F A + L++L I VAHN N FDY + EC AG
Sbjct: 628 TKLTGISDGMVYNAPVFADIAQPL---LDKLAGSI-FVAHNVN-FDYGFIKKECEVAGHF 682
Query: 491 LPSDLLC 511
+C
Sbjct: 683 FKMPKMC 689
>UniRef50_A4SZE6 Cluster: DNA polymerase III, epsilon subunit; n=1;
Polynucleobacter sp. QLW-P1DMWA-1|Rep: DNA polymerase
III, epsilon subunit - Polynucleobacter sp. QLW-P1DMWA-1
Length = 466
Score = 42.3 bits (95), Expect = 0.012
Identities = 37/125 (29%), Positives = 58/125 (46%)
Frame = +2
Query: 137 FFDIETTGLPFQXXNKTKXTELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDVVV 316
F DIETTG F ++ + TE+ ++ D + + L +NP+ I ++
Sbjct: 13 FVDIETTGSHF---DRDRITEIGIKTLANDGIQVWERL---------INPQTFIPQNIQR 60
Query: 317 LTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAGILLP 496
LTG++ + ++ P+F Q A + EL I VAHN FDY + A GI
Sbjct: 61 LTGISPQMVEGQPSFDQVAKEL---KQELEGKI-FVAHNAR-FDYGFIKASFKRVGIDFK 115
Query: 497 SDLLC 511
+LC
Sbjct: 116 PKVLC 120
>UniRef50_Q1WU39 Cluster: ATP-dependent helicase, DinG family; n=1;
Lactobacillus salivarius subsp. salivarius UCC118|Rep:
ATP-dependent helicase, DinG family - Lactobacillus
salivarius subsp. salivarius (strain UCC118)
Length = 929
Score = 41.9 bits (94), Expect = 0.016
Identities = 35/124 (28%), Positives = 53/124 (42%)
Frame = +2
Query: 113 MVRITTYVFFDIETTGLPFQXXNKTKXTELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEK 292
M++ Y D+ETTG +K + + D + S ++NP
Sbjct: 1 MIKERIYAVVDLETTGPKQDGSDK----------IIQFSCDFVQSNKIVNHFSTLINPGM 50
Query: 293 KIHPDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAEC 472
I +V LTG+ ++ ++ AP F + A I + L VAHN N FDY L +E
Sbjct: 51 PIPVEVKKLTGIKDKDVRYAPYFDEVAGTIYAMLQN----TTFVAHNVN-FDYSFLSSEL 105
Query: 473 NDAG 484
AG
Sbjct: 106 ERAG 109
>UniRef50_A6SVF1 Cluster: Uncharacterized conserved protein; n=4;
Burkholderiales|Rep: Uncharacterized conserved protein -
Janthinobacterium sp. (strain Marseille) (Minibacterium
massiliensis)
Length = 195
Score = 41.9 bits (94), Expect = 0.016
Identities = 36/126 (28%), Positives = 61/126 (48%)
Frame = +2
Query: 134 VFFDIETTGLPFQXXNKTKXTELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDVV 313
+F D+ETTG + TE+ +AV D I + S +NP + I +
Sbjct: 8 IFVDLETTGANLV---NDRITEIGIVAVDPDGC--------IDRWSTFVNPGRPIPEFIQ 56
Query: 314 VLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAGILL 493
LTG+++E +++AP F+ A+ + E + +AHN FDY L +G +L
Sbjct: 57 GLTGISDEMVESAPMFETLADTV----RERLQDGLFIAHNAR-FDYGFLHHAFVRSGHVL 111
Query: 494 PSDLLC 511
+++LC
Sbjct: 112 NAEMLC 117
>UniRef50_Q9PQB4 Cluster: DNA polymerase III polC-type; n=1;
Ureaplasma parvum|Rep: DNA polymerase III polC-type -
Ureaplasma parvum (Ureaplasma urealyticum biotype 1)
Length = 1442
Score = 41.9 bits (94), Expect = 0.016
Identities = 39/111 (35%), Positives = 58/111 (52%)
Frame = +2
Query: 128 TYVFFDIETTGLPFQXXNKTKXTELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPD 307
TYV FDIETTGL N + E F AV + + Q G +K+ F + P ++I+ +
Sbjct: 408 TYVIFDIETTGL---FPNFDEIIE--FGAVIMQN-NKQIG----EKIQFFIKPIQQINEN 457
Query: 308 VVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKIL 460
V LT ++ E + NA K A++ + E+ LVAHNG +FD +
Sbjct: 458 VTNLTNISQEMVNNAIDEK---TALLK-IKEIFDDHILVAHNGINFDINFI 504
>UniRef50_Q9KC83 Cluster: ATP-dependent DNA helicase; n=3;
Bacillus|Rep: ATP-dependent DNA helicase - Bacillus
halodurans
Length = 942
Score = 41.5 bits (93), Expect = 0.021
Identities = 37/113 (32%), Positives = 58/113 (51%), Gaps = 2/113 (1%)
Frame = +2
Query: 257 IKKLSFVLNPEKKIHPDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNG 436
++ ++NPE+ I P + LTG+++E +K APTF Q ++S L + VAHN
Sbjct: 37 VESFCTLVNPERSIPPFIEELTGISDEMVKGAPTFHQCIPELMSML----EGGVFVAHNV 92
Query: 437 NSFDYKIL--LAECNDAGILLPSDLLCIDSLIGFRKILKTTQKSLPLKMNTSK 589
+ FD L L E G LL + ID+ + +IL T++S L T +
Sbjct: 93 H-FDLSFLQKLLEHEGYGPLL---VPIIDT-VELSRILLPTEESYKLSALTEQ 140
>UniRef50_Q6YQB0 Cluster: DNA polymerase III alpha subunit; n=2;
Candidatus Phytoplasma asteris|Rep: DNA polymerase III
alpha subunit - Onion yellows phytoplasma
Length = 1571
Score = 41.5 bits (93), Expect = 0.021
Identities = 39/154 (25%), Positives = 69/154 (44%)
Frame = +2
Query: 113 MVRITTYVFFDIETTGLPFQXXNKTKXTELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEK 292
+++ TYV FD+ETTGL + K E+ + + + + I + ++P++
Sbjct: 475 VLKEATYVVFDLETTGL---SNVRDKIIEIAGVKIKKGN--------KIGEFQKFIDPQQ 523
Query: 293 KIHPDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAEC 472
K+ + +T +T+E L+ T Q ++F K LVAHN SFD L +
Sbjct: 524 KLTKTITDITNITDEMLQGQQTIDQVLPQFLAF----AKDCVLVAHNA-SFDINFLKEKA 578
Query: 473 NDAGILLPSDLLCIDSLIGFRKILKTTQKSLPLK 574
+ I L + ID++ ++ K LK
Sbjct: 579 KELKISLEPQPI-IDTMALSQRYFSNLLKYFSLK 611
>UniRef50_A6WGD9 Cluster: DNA polymerase III, epsilon subunit; n=1;
Kineococcus radiotolerans SRS30216|Rep: DNA polymerase
III, epsilon subunit - Kineococcus radiotolerans
SRS30216
Length = 224
Score = 41.5 bits (93), Expect = 0.021
Identities = 39/122 (31%), Positives = 58/122 (47%)
Frame = +2
Query: 131 YVFFDIETTGLPFQXXNKTKXTELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDV 310
Y D+ETTGL + ++ +AV+ LD + + + S +++P + P
Sbjct: 26 YAVLDVETTGLRPETGDRVVQ-----IAVTL--LDARGTVE--RSWSSLVDPHRDPGPTH 76
Query: 311 VVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAGIL 490
V G+T E L APTF Q A + L+ VAHN FD+K + AE AG+
Sbjct: 77 V--HGITAERLAGAPTFAQLAPTVAGLLDGR----VFVAHNAR-FDWKFVSAEMRAAGVH 129
Query: 491 LP 496
LP
Sbjct: 130 LP 131
>UniRef50_A5BCR2 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 340
Score = 41.1 bits (92), Expect = 0.027
Identities = 40/157 (25%), Positives = 71/157 (45%), Gaps = 5/157 (3%)
Frame = +2
Query: 113 MVRITTYVFFDIETTGLPFQXXNKTKXTELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEK 292
+ ++ T + FD ETTGL ++ + + + DL G ++NPE+
Sbjct: 130 LAKLVTVIVFDTETTGL-------SRANDR-IIEIGLQDL----GGGENSTFQTLVNPER 177
Query: 293 KI-HPDVV-VLTGLTNESLKNAPTFKQRANAIVSFLNELPKP---ICLVAHNGNSFDYKI 457
+ +P V + T + N + P +K ++ ++ KP I VAHNG SFD
Sbjct: 178 IVPNPHVHGITTYMVNRP--DVPRWKDLIPILLQYVESRQKPGGLILWVAHNGRSFDVPF 235
Query: 458 LLAECNDAGILLPSDLLCIDSLIGFRKILKTTQKSLP 568
L+ E + +P + +D+L R+ +K+ LP
Sbjct: 236 LINEFSRCNTEVPPNWRFMDTLPLAREFIKSAGSDLP 272
>UniRef50_Q9Z8D3 Cluster: DNA Polymerase III Epsilon Chain; n=8;
Chlamydiaceae|Rep: DNA Polymerase III Epsilon Chain -
Chlamydia pneumoniae (Chlamydophila pneumoniae)
Length = 237
Score = 40.7 bits (91), Expect = 0.036
Identities = 33/112 (29%), Positives = 50/112 (44%), Gaps = 2/112 (1%)
Frame = +2
Query: 194 TELCFLAVSRDDLDIQSGLPPIKKLSFV--LNPEKKIHPDVVVLTGLTNESLKNAPTFKQ 367
TE + RD + + + SF+ +NPE I + + G+T +++ +AP F +
Sbjct: 14 TETTGTQIERDRIIEIAAYNSVTDESFLTYVNPEIPIPDEASKIHGITTDAVLSAPKFPE 73
Query: 368 RANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAGILLPSDLLCIDSL 523
F E LVAHN + FD+ +L EC L P IDSL
Sbjct: 74 AYEGFRKFCGE---DSILVAHNNDGFDFPLLGKECRRHS-LEPLTNRTIDSL 121
>UniRef50_Q8A811 Cluster: DNA Pol III Epsilon Chain; n=21; cellular
organisms|Rep: DNA Pol III Epsilon Chain - Bacteroides
thetaiotaomicron
Length = 277
Score = 40.7 bits (91), Expect = 0.036
Identities = 34/118 (28%), Positives = 51/118 (43%)
Frame = +2
Query: 134 VFFDIETTGLPFQXXNKTKXTELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDVV 313
VFFD+ETTG N + E+C+L V +G K + +NPE I
Sbjct: 28 VFFDLETTGTNI---NTDRIVEICYLKV------YPNGNEETKTMR--INPEMHIPEASS 76
Query: 314 VLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAGI 487
+ G+ + + + PTFK+ A + + L N N FD +L E AG+
Sbjct: 77 AVHGIYDADVADCPTFKEVAKNVARDIEGCD----LAGFNSNRFDIPVLAEEFLRAGV 130
>UniRef50_Q21VB4 Cluster: DNA polymerase III, epsilon subunit; n=3;
Betaproteobacteria|Rep: DNA polymerase III, epsilon
subunit - Rhodoferax ferrireducens (strain DSM 15236 /
ATCC BAA-621 / T118)
Length = 476
Score = 40.7 bits (91), Expect = 0.036
Identities = 38/127 (29%), Positives = 59/127 (46%)
Frame = +2
Query: 131 YVFFDIETTGLPFQXXNKTKXTELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDV 310
YV D+ETTG + +A R I++G + + S ++NP I P +
Sbjct: 5 YVLLDLETTG------GNPVHDRITEIAAVR----IENG-QEVARWSTLVNPGCSISPFI 53
Query: 311 VVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAGIL 490
LTG++N ++ AP F+ A +++ L+ LVAHN FD+ LL E +
Sbjct: 54 QHLTGISNAMVRGAPGFETVAQHLLALLD----GAVLVAHNVR-FDHGFLLNELARLDVA 108
Query: 491 LPSDLLC 511
L LC
Sbjct: 109 LRVKTLC 115
>UniRef50_Q839U7 Cluster: DNA polymerase III, epsilon subunit; n=1;
Enterococcus faecalis|Rep: DNA polymerase III, epsilon
subunit - Enterococcus faecalis (Streptococcus faecalis)
Length = 289
Score = 40.3 bits (90), Expect = 0.048
Identities = 31/116 (26%), Positives = 56/116 (48%)
Frame = +2
Query: 122 ITTYVFFDIETTGLPFQXXNKTKXTELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIH 301
+ ++ FDIETTGL F + + ++ D +++ ++N + I
Sbjct: 5 VKEFIAFDIETTGLDFHQDAVIQISAARYV----DGIEVDY-------FDTLVNSDY-IP 52
Query: 302 PDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAE 469
++ LTG+TN+ + NAPT + ++ +L + LV HN SFD+ L A+
Sbjct: 53 DEITKLTGITNDQVLNAPTLDE----VMPYLFDYLGDTILVGHNIKSFDFPFLKAK 104
>UniRef50_Q831X1 Cluster: DNA polymerase III, epsilon
subunit/ATP-dependent helicase DinG; n=2;
Enterococcus|Rep: DNA polymerase III, epsilon
subunit/ATP-dependent helicase DinG - Enterococcus
faecalis (Streptococcus faecalis)
Length = 929
Score = 40.3 bits (90), Expect = 0.048
Identities = 30/98 (30%), Positives = 48/98 (48%)
Frame = +2
Query: 278 LNPEKKIHPDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKI 457
+NP + + + LTG++N ++ AP F+ A+ I +L + VAHN + FDY
Sbjct: 51 VNPNQVVPKQIQSLTGISNTQVQKAPYFEDVAHTIYHYLED----TIFVAHNVH-FDYNF 105
Query: 458 LLAECNDAGILLPSDLLCIDSLIGFRKILKTTQKSLPL 571
L E G P + ID+ + +I T+KS L
Sbjct: 106 LARELVRCG-TPPLTIPAIDT-VELAQIFLPTEKSFRL 141
>UniRef50_Q8U4P3 Cluster: Putative uncharacterized protein PF0037;
n=1; Pyrococcus furiosus|Rep: Putative uncharacterized
protein PF0037 - Pyrococcus furiosus
Length = 564
Score = 40.3 bits (90), Expect = 0.048
Identities = 31/131 (23%), Positives = 59/131 (45%), Gaps = 5/131 (3%)
Frame = +2
Query: 23 KSTCQSFIFFQHANFISSNSSCKSQKLIHKMV-RITTYVFFDIETTGLPF--QXXNKTKX 193
KS I F+ A + S +H ++ R+ ++T GL ++ K
Sbjct: 118 KSKPNELILFELAEVVKSLRVLSKSPSVHDILSRLLKSRNIQLKTIGLRLFLNISHEVKD 177
Query: 194 T--ELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDVVVLTGLTNESLKNAPTFKQ 367
EL F+ S+D ++ GL ++++S V ++ + + +LT + N +L P F++
Sbjct: 178 VLRELTFIIPSKDKFVLELGLDILEEISNVKITQETLDDFIAILTRVKNIALYGPPEFRE 237
Query: 368 RANAIVSFLNE 400
RA I + E
Sbjct: 238 RAKVIAEKIEE 248
>UniRef50_Q38X67 Cluster: Putative ATP-dependent helicase, DinG
family; n=1; Lactobacillus sakei subsp. sakei 23K|Rep:
Putative ATP-dependent helicase, DinG family -
Lactobacillus sakei subsp. sakei (strain 23K)
Length = 944
Score = 39.9 bits (89), Expect = 0.063
Identities = 43/137 (31%), Positives = 63/137 (45%)
Frame = +2
Query: 113 MVRITTYVFFDIETTGLPFQXXNKTKXTELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEK 292
M R T Y D+ETTG + ++ C L +Q+G I+ +S +NP +
Sbjct: 1 MNRETIYAVVDLETTGTNIKDGDRIIQFG-CAL--------VQNG-KIIQTISQDVNPLR 50
Query: 293 KIHPDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAEC 472
+ + LT +T + L+ AP F+ A +V L+ VAHN N FD L E
Sbjct: 51 DVPTKIQHLTHITADQLELAPIFEDLAPTLVEILS----GTVFVAHNIN-FDLPFLNGEL 105
Query: 473 NDAGILLPSDLLCIDSL 523
G L P DL ID++
Sbjct: 106 TRVG-LQPLDLAGIDTV 121
>UniRef50_Q038V8 Cluster: Rad3-related DNA helicase; n=1;
Lactobacillus casei ATCC 334|Rep: Rad3-related DNA
helicase - Lactobacillus casei (strain ATCC 334)
Length = 928
Score = 39.9 bits (89), Expect = 0.063
Identities = 27/77 (35%), Positives = 40/77 (51%)
Frame = +2
Query: 257 IKKLSFVLNPEKKIHPDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNG 436
I+ +S ++NP++ + + LTGL L AP F++ I L++L VAHN
Sbjct: 39 IQTISQLVNPDRSVPVAIQRLTGLDPNRLVAAPYFEE----IAKTLHQLLTDTVFVAHNV 94
Query: 437 NSFDYKILLAECNDAGI 487
N FDY L AE G+
Sbjct: 95 N-FDYPFLNAEFERVGL 110
>UniRef50_A5Z7T3 Cluster: Putative uncharacterized protein; n=1;
Eubacterium ventriosum ATCC 27560|Rep: Putative
uncharacterized protein - Eubacterium ventriosum ATCC
27560
Length = 237
Score = 39.9 bits (89), Expect = 0.063
Identities = 42/142 (29%), Positives = 66/142 (46%)
Frame = +2
Query: 122 ITTYVFFDIETTGLPFQXXNKTKXTELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIH 301
+ YV DIET+G+ + K E+ + V RD + + S ++NP K+
Sbjct: 2 VKDYVCVDIETSGIRVKWD---KIIEIGAVKV-RDGKAVDT-------FSELINPGLKLS 50
Query: 302 PDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDA 481
P + LTG+T+E LK+ P ++ + F + ++ HN FDY L + N
Sbjct: 51 PYITELTGITDEMLKDKPFIEEVLPRFIEFAGD----DVIMGHN-IMFDYSFL--KQNAI 103
Query: 482 GILLPSDLLCIDSLIGFRKILK 547
L D + ID+L RK LK
Sbjct: 104 NQKLKFDKMGIDTLKIARKTLK 125
>UniRef50_A5KMD9 Cluster: Putative uncharacterized protein; n=1;
Ruminococcus torques ATCC 27756|Rep: Putative
uncharacterized protein - Ruminococcus torques ATCC
27756
Length = 279
Score = 39.9 bits (89), Expect = 0.063
Identities = 37/144 (25%), Positives = 70/144 (48%)
Frame = +2
Query: 110 KMVRITTYVFFDIETTGLPFQXXNKTKXTELCFLAVSRDDLDIQSGLPPIKKLSFVLNPE 289
+ + + +Y+ FD+ETTGL E+ + L ++ G + + F+ P+
Sbjct: 32 RTIMLKSYIAFDLETTGL------DPMNNEIIEIGA----LKVRDGKVSERFMEFI-KPQ 80
Query: 290 KKIHPDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAE 469
+ I P + LTG++N+ + +A + + I F++ + I L+ HN FDY +
Sbjct: 81 ELISPAITGLTGISNDMVASA---RPARSVITDFIDFCEEDI-LIGHN-IIFDYS--FTK 133
Query: 470 CNDAGILLPSDLLCIDSLIGFRKI 541
C A LP + + ID+L +K+
Sbjct: 134 CTAAREGLPFEKMGIDTLKIAKKV 157
>UniRef50_A6PV20 Cluster: DNA polymerase III, epsilon subunit; n=1;
Victivallis vadensis ATCC BAA-548|Rep: DNA polymerase
III, epsilon subunit - Victivallis vadensis ATCC BAA-548
Length = 185
Score = 39.5 bits (88), Expect = 0.083
Identities = 40/146 (27%), Positives = 65/146 (44%)
Frame = +2
Query: 131 YVFFDIETTGLPFQXXNKTKXTELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDV 310
+ FD+ETTG+ + + EL + V RD + + ++NP +I
Sbjct: 9 FTIFDVETTGM---SPVRDRIVELAAVRVDRDG--------SLSRFQSLVNPGVRIPAQA 57
Query: 311 VVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAGIL 490
V + +T++ + AP+F + + F +E LVAHN FD L G+
Sbjct: 58 VAVHHITDDMVAGAPSFARMGLDFLEFASE----STLVAHNAR-FDLGFLQESLARTGLP 112
Query: 491 LPSDLLCIDSLIGFRKILKTTQKSLP 568
L +DSL ++LKTT +LP
Sbjct: 113 LWKG-KTLDSL----RLLKTTFPNLP 133
>UniRef50_Q89WN8 Cluster: DNA polymerase III epsilon chain; n=7;
Alphaproteobacteria|Rep: DNA polymerase III epsilon
chain - Bradyrhizobium japonicum
Length = 239
Score = 39.1 bits (87), Expect = 0.11
Identities = 22/64 (34%), Positives = 34/64 (53%)
Frame = +2
Query: 278 LNPEKKIHPDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKI 457
+NPE+ + + + GL+ E L P F + A+A + F+ + P LV HN SFD
Sbjct: 43 INPERDMPAEAFAVHGLSAEFLSTKPVFHEVADAFLEFIGDAP----LVIHNA-SFDISF 97
Query: 458 LLAE 469
+ AE
Sbjct: 98 INAE 101
>UniRef50_Q47S15 Cluster: Exonuclease; n=1; Thermobifida fusca
YX|Rep: Exonuclease - Thermobifida fusca (strain YX)
Length = 516
Score = 39.1 bits (87), Expect = 0.11
Identities = 35/125 (28%), Positives = 58/125 (46%)
Frame = +2
Query: 119 RITTYVFFDIETTGLPFQXXNKTKXTELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKI 298
R TY D+ETTGL N + +C +AV R ++ + + S ++NP I
Sbjct: 17 RTLTYAVLDLETTGL-----NPKRGARVCEIAVVR----MRGDGTVLDEYSTLVNPGSSI 67
Query: 299 HPDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECND 478
G+T+ +K AP+F Q A ++++L+ +V + F+ K L AE
Sbjct: 68 RNSA--FHGITDTWVKTAPSFDQVAGDLLAYLDG-----AIVVGHKLDFEEKFLAAEFAR 120
Query: 479 AGILL 493
G+ L
Sbjct: 121 LGVPL 125
>UniRef50_Q3K0L7 Cluster: Exonuclease, DNA polymerase III, epsilon
subunit family; n=7; Streptococcus agalactiae|Rep:
Exonuclease, DNA polymerase III, epsilon subunit family
- Streptococcus agalactiae serotype Ia
Length = 604
Score = 39.1 bits (87), Expect = 0.11
Identities = 41/143 (28%), Positives = 64/143 (44%), Gaps = 4/143 (2%)
Frame = +2
Query: 131 YVFFDIETTGLPFQXXNKTKXTELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDV 310
++ FDIETTGL Q + + F ++G + ++N + I DV
Sbjct: 53 FIAFDIETTGLNSQQDRIVEVGAVLF----------ENG-KVVDSYESLVNAKVNISADV 101
Query: 311 VVLTGLTNESLKNAPTFKQRANAIVSFLNEL---PKPICLVAHNGNSFDYKILLAECNDA 481
+ +TN +KNAP+ Q +V+FL + P+C AHN FD L CN
Sbjct: 102 TRINNITNRMIKNAPSENQVYYELVNFLGDALNGKTPVC--AHNA-KFDMGFL---CNTL 155
Query: 482 GIL-LPSDLLCIDSLIGFRKILK 547
L ++ +D+L RK +K
Sbjct: 156 SRLGYNGEIKYLDTLSLSRKNVK 178
>UniRef50_A7B5W2 Cluster: Putative uncharacterized protein; n=1;
Ruminococcus gnavus ATCC 29149|Rep: Putative
uncharacterized protein - Ruminococcus gnavus ATCC 29149
Length = 219
Score = 39.1 bits (87), Expect = 0.11
Identities = 32/119 (26%), Positives = 54/119 (45%)
Frame = +2
Query: 122 ITTYVFFDIETTGLPFQXXNKTKXTELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIH 301
+ Y FD+ETTG+ N E+ + V + G+ S ++NP + I
Sbjct: 12 VPDYTVFDLETTGI---SANMDDIIEISAVKV-------KGGIVQ-DTFSTLVNPGRHIP 60
Query: 302 PDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECND 478
+ G+T++ + AP ++ A+ FL + + I LV HN SFD K + E +
Sbjct: 61 AQATKVNGITDQMVSEAPLIRE---AMTEFLRFVGEDI-LVGHNIQSFDMKFIYREVEE 115
>UniRef50_A0L3L4 Cluster: DNA polymerase III, epsilon subunit; n=1;
Magnetococcus sp. MC-1|Rep: DNA polymerase III, epsilon
subunit - Magnetococcus sp. (strain MC-1)
Length = 237
Score = 39.1 bits (87), Expect = 0.11
Identities = 22/64 (34%), Positives = 36/64 (56%)
Frame = +2
Query: 278 LNPEKKIHPDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKI 457
+NPE++I D + G+T+ + N+P FK+ + ++F+ E LV HN FD +
Sbjct: 43 VNPEREIPADATKVHGITDADVANSPKFKEIYHEFLAFIGE----DSLVIHNA-EFDMRF 97
Query: 458 LLAE 469
L AE
Sbjct: 98 LNAE 101
>UniRef50_Q2Q0H1 Cluster: Putative DNA polymerase type III,
exonuclease domain; n=1; uncultured organism
HF70_19B12|Rep: Putative DNA polymerase type III,
exonuclease domain - uncultured organism HF70_19B12
Length = 270
Score = 38.7 bits (86), Expect = 0.15
Identities = 37/128 (28%), Positives = 61/128 (47%)
Frame = +2
Query: 140 FDIETTGLPFQXXNKTKXTELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDVVVL 319
FD ETTGL N K L + + RD +D S + ++ +++P KI + +
Sbjct: 12 FDTETTGL-----NPRKDRILQYAFIGRD-VD-GSSVCQVE----LIDPGIKIPEASMNV 60
Query: 320 TGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAGILLPS 499
G++NE + +F +N I EL +V HN N+FD++ + E G +PS
Sbjct: 61 HGISNEDVTGRGSFGMHSNDIA----ELIDGAIIVGHNINAFDWRFIEFEFMRVGEAVPS 116
Query: 500 DLLCIDSL 523
+D+L
Sbjct: 117 PYALVDTL 124
>UniRef50_Q895Z5 Cluster: DNA polymerase III alpha subunit; n=1;
Clostridium tetani|Rep: DNA polymerase III alpha subunit
- Clostridium tetani
Length = 380
Score = 38.7 bits (86), Expect = 0.15
Identities = 22/70 (31%), Positives = 37/70 (52%)
Frame = +2
Query: 257 IKKLSFVLNPEKKIHPDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNG 436
++K + ++NP+ I + +TN +K++P + ++ F+ E P LVAHN
Sbjct: 115 VEKYNTLINPKINIPKRATEINNITNNMVKDSPVIEDVLPELLKFIKEYP----LVAHNA 170
Query: 437 NSFDYKILLA 466
SFD K L A
Sbjct: 171 -SFDIKFLNA 179
>UniRef50_Q3JDE1 Cluster: Exonuclease; n=3; Gammaproteobacteria|Rep:
Exonuclease - Nitrosococcus oceani (strain ATCC 19707 /
NCIMB 11848)
Length = 205
Score = 38.7 bits (86), Expect = 0.15
Identities = 32/122 (26%), Positives = 55/122 (45%)
Frame = +2
Query: 131 YVFFDIETTGLPFQXXNKTKXTELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDV 310
Y+ D ETTGLP ++ ++ L ++ + S + + F P+K+I +
Sbjct: 16 YIVLDTETTGLP----DENGLPDIVTLGIT-----VVSNREIAESVEFKTRPQKRISEEA 66
Query: 311 VVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAGIL 490
+ G+TN+ +F + I +L K +V HN SFD+ ILL G+
Sbjct: 67 QSIHGITNKQAAAFDSFDSQWQQISEYL----KHQLIVIHNA-SFDWPILLDHVLRHGLA 121
Query: 491 LP 496
+P
Sbjct: 122 MP 123
>UniRef50_Q15TC4 Cluster: DNA polymerase III, epsilon subunit; n=1;
Pseudoalteromonas atlantica T6c|Rep: DNA polymerase III,
epsilon subunit - Pseudoalteromonas atlantica (strain
T6c / BAA-1087)
Length = 769
Score = 38.7 bits (86), Expect = 0.15
Identities = 20/61 (32%), Positives = 38/61 (62%)
Frame = +2
Query: 269 SFVLNPEKKIHPDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFD 448
S ++NPE+++ + LTG++N+ +++AP F + + + +F+ + VAHN N FD
Sbjct: 639 SSLINPERRVPHFITRLTGISNDMVEDAPLFCEVIDDLEAFMQD----CIFVAHNVN-FD 693
Query: 449 Y 451
Y
Sbjct: 694 Y 694
>UniRef50_Q11UG6 Cluster: DNA polymerase III, epsilon subunit; n=1;
Cytophaga hutchinsonii ATCC 33406|Rep: DNA polymerase
III, epsilon subunit - Cytophaga hutchinsonii (strain
ATCC 33406 / NCIMB 9469)
Length = 449
Score = 38.7 bits (86), Expect = 0.15
Identities = 23/65 (35%), Positives = 33/65 (50%)
Frame = +2
Query: 275 VLNPEKKIHPDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYK 454
++NPE++I + LTG+ E + +AP F A I F + VAHN N FDY
Sbjct: 40 LINPERRIPVFITSLTGIDTEMVADAPVFADVAREITDFTRD----SVFVAHNVN-FDYT 94
Query: 455 ILLAE 469
+ E
Sbjct: 95 FVKKE 99
>UniRef50_Q0EZC1 Cluster: Probable DNA polymerase III (Epsilon
chain) protein; n=1; Mariprofundus ferrooxydans
PV-1|Rep: Probable DNA polymerase III (Epsilon chain)
protein - Mariprofundus ferrooxydans PV-1
Length = 300
Score = 38.7 bits (86), Expect = 0.15
Identities = 25/87 (28%), Positives = 43/87 (49%)
Frame = +2
Query: 278 LNPEKKIHPDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKI 457
+NPE+ I +VV + G+ N +K+ PTF++ A + F+ + LV HN FD
Sbjct: 98 INPERNIPDEVVRIHGIDNAKVKDQPTFREIAQEFLDFI----EGATLVIHNA-PFDLGF 152
Query: 458 LLAECNDAGILLPSDLLCIDSLIGFRK 538
++ E + ID+L+ R+
Sbjct: 153 IMNELRINNFPEIGHMQVIDTLVFARE 179
>UniRef50_A6LLU9 Cluster: DNA polymerase III, alpha subunit; n=1;
Thermosipho melanesiensis BI429|Rep: DNA polymerase III,
alpha subunit - Thermosipho melanesiensis BI429
Length = 1362
Score = 38.7 bits (86), Expect = 0.15
Identities = 45/155 (29%), Positives = 68/155 (43%), Gaps = 1/155 (0%)
Frame = +2
Query: 110 KMVRITTYVFFDIETTGLPFQXXNKTKXTELCFL-AVSRDDLDIQSGLPPIKKLSFVLNP 286
KM+ TY FD+ETTG K E+ + AV D + I S + P
Sbjct: 337 KMLDDVTYTVFDLETTG------TNAKFDEIIEIGAVKYRDGKV------INTFSSFVKP 384
Query: 287 EKKIHPDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLA 466
K I LTG+T+E +K+A + ++ + F++ LVAHN + FDY +
Sbjct: 385 TKSISEFTQKLTGITDEMVKDAKSIEEVFPEFLKFID----GTVLVAHNAD-FDYG-FIR 438
Query: 467 ECNDAGILLPSDLLCIDSLIGFRKILKTTQKSLPL 571
E N D +D+L + +L+ KS L
Sbjct: 439 EVNRRLYNKELDFAYLDTLKLSKVLLRGKVKSFGL 473
>UniRef50_A3I8T8 Cluster: Bifunctional ATP-dependent DNA
helicase/DNA polymerase III subunit epsilon; n=1;
Bacillus sp. B14905|Rep: Bifunctional ATP-dependent DNA
helicase/DNA polymerase III subunit epsilon - Bacillus
sp. B14905
Length = 914
Score = 38.7 bits (86), Expect = 0.15
Identities = 25/70 (35%), Positives = 38/70 (54%)
Frame = +2
Query: 278 LNPEKKIHPDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKI 457
+NP K I + LT +TNE +K++ F++ A+ ++ EL VAHN + FD
Sbjct: 37 INPGKAIPSFIQDLTHITNEDVKDSYPFEEHAD----YIYELLADCVFVAHNAD-FDLSF 91
Query: 458 LLAECNDAGI 487
L AE AG+
Sbjct: 92 LQAEFKRAGL 101
>UniRef50_Q8YE22 Cluster: DNA POLYMERASE III, EPSILON CHAIN; n=27;
Alphaproteobacteria|Rep: DNA POLYMERASE III, EPSILON
CHAIN - Brucella melitensis
Length = 248
Score = 38.3 bits (85), Expect = 0.19
Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 1/113 (0%)
Frame = +2
Query: 134 VFFDIETTGLPFQXXNKTKXTELCFLAVSRDDLDIQSGLPPIKKLSFVLNPE-KKIHPDV 310
+ FD ETTGL L + +++ + P + +NP+ +++HPD
Sbjct: 18 IVFDTETTGLE----------RLEDRVIEIGGVELVNRFPTGRTFHKFINPQGRQVHPDA 67
Query: 311 VVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAE 469
+ + G++NE L + P F + + + F++ LVAHN FD + AE
Sbjct: 68 LAVHGISNEQLLDKPVFAEILDEFLEFIDGAR----LVAHNA-MFDLGFINAE 115
>UniRef50_Q03FN6 Cluster: Rad3-related DNA helicase; n=1;
Pediococcus pentosaceus ATCC 25745|Rep: Rad3-related DNA
helicase - Pediococcus pentosaceus (strain ATCC 25745 /
183-1w)
Length = 929
Score = 37.9 bits (84), Expect = 0.25
Identities = 34/120 (28%), Positives = 51/120 (42%)
Frame = +2
Query: 125 TTYVFFDIETTGLPFQXXNKTKXTELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHP 304
T Y D+E TG F N+ F +++G + +NP++ I
Sbjct: 4 TKYAVVDLEMTGSDFDGDNRIIQIGCAF---------VENG-KIVDTFQSKVNPQRPIPA 53
Query: 305 DVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAG 484
+ LTG+T+E ++NAP F N IV + VAHN FD+ L E +G
Sbjct: 54 GITKLTGITDEQVQNAPKF----NDIVDEVYRKLVDTVFVAHN-VEFDFPFLNQELVRSG 108
>UniRef50_A7RWU1 Cluster: Predicted protein; n=2; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 461
Score = 37.9 bits (84), Expect = 0.25
Identities = 45/171 (26%), Positives = 77/171 (45%), Gaps = 10/171 (5%)
Frame = +2
Query: 128 TYVFFDIETTGLPFQXXNKTKXTELCFLAVSRDDLDIQSGLPPIKKL-SFVLNP----EK 292
T+V FD ETTGL + +L + + D L + P + + S N E
Sbjct: 155 TFVMFDTETTGLD---TSNDVIIQLACASENGDPLHSRYMFPGGRSIGSEATNAHGISEA 211
Query: 293 KIHPDVVVLTGLTNESLKNAPTFKQRANAIVSFL----NELPKPICLVAHNGNSFDYKIL 460
I V+L L + + K ++FL ++ PK +CLVAH G+SFD+++L
Sbjct: 212 FIDGSRVLLKD--GRPLADVASQKDGLREFIAFLKMHQSQSPKRLCLVAHYGDSFDFRLL 269
Query: 461 LAECNDAGILLPSDLLCIDSLIGFRKILKTTQKSLPLKMNTS-KDDSASEL 610
+ C L+ + L+ K+++ ++K ++S K +S S L
Sbjct: 270 I-NCLKRHNLMNEFISTGSVLLDSVKVVRASKKQEKSPFDSSFKKESLSAL 319
>UniRef50_Q8RA32 Cluster: DNA polymerase III polC-type; n=7;
Clostridia|Rep: DNA polymerase III polC-type -
Thermoanaerobacter tengcongensis
Length = 1401
Score = 37.9 bits (84), Expect = 0.25
Identities = 33/126 (26%), Positives = 56/126 (44%)
Frame = +2
Query: 131 YVFFDIETTGLPFQXXNKTKXTELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDV 310
+V FDIETTGL + E+ + + + + +NP+ I +
Sbjct: 388 FVVFDIETTGL---SNINDEIIEIGAVKIKNKKI--------VDTFETFVNPQIPISSFI 436
Query: 311 VVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAGIL 490
LTG+ +K+AP ++ + FL E K LVAHN N FD + ++ G+
Sbjct: 437 TKLTGIDESMVKDAPLIEE---VLPKFL-EFAKGAVLVAHNAN-FDVSFIKSKAKKLGLT 491
Query: 491 LPSDLL 508
+ + +L
Sbjct: 492 VENTVL 497
>UniRef50_Q6MC14 Cluster: Putative DNA polymerase III, epsilon
chain, mutD; n=1; Candidatus Protochlamydia amoebophila
UWE25|Rep: Putative DNA polymerase III, epsilon chain,
mutD - Protochlamydia amoebophila (strain UWE25)
Length = 216
Score = 37.5 bits (83), Expect = 0.33
Identities = 23/82 (28%), Positives = 41/82 (50%)
Frame = +2
Query: 278 LNPEKKIHPDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKI 457
++P I P+ + +T+E + NA +F A+ F+ + L+AHN ++FD
Sbjct: 19 VHPGFPIPPESTAIHHITDEMVANAGSF---ADVGAEFVEFCAGEVVLIAHNNDNFDLHF 75
Query: 458 LLAECNDAGILLPSDLLCIDSL 523
L E ++LP+ +DSL
Sbjct: 76 LRHEFERNQLILPTHWKFLDSL 97
>UniRef50_Q5KXX5 Cluster: ATP-dependent DNA helicase; n=2;
Geobacillus|Rep: ATP-dependent DNA helicase -
Geobacillus kaustophilus
Length = 909
Score = 37.5 bits (83), Expect = 0.33
Identities = 34/120 (28%), Positives = 55/120 (45%)
Frame = +2
Query: 125 TTYVFFDIETTGLPFQXXNKTKXTELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHP 304
T +V D+ETTG K + L ++ ++ GL +++ + NPE+ I
Sbjct: 3 TRFVIIDLETTG-----NGPKKGDRIIQLGMAV----VEDGLI-VERFASFFNPEQPIPL 52
Query: 305 DVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAG 484
+ LT + E ++ AP F +A I + ++ VAHN + FD L AE AG
Sbjct: 53 FIQQLTNINEEMVEGAPLFADKAGEIAALMH----GAYFVAHNVD-FDLPFLQAELERAG 107
>UniRef50_Q081L5 Cluster: DNA polymerase III, epsilon subunit; n=5;
Gammaproteobacteria|Rep: DNA polymerase III, epsilon
subunit - Shewanella frigidimarina (strain NCIMB 400)
Length = 242
Score = 37.5 bits (83), Expect = 0.33
Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 2/97 (2%)
Frame = +2
Query: 278 LNPEKKIHPDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKI 457
+NP + I + + + G+TN+ + N P F Q A + F++ +VAHN N FD
Sbjct: 55 INPGQAIDEEAIQVHGITNDRVANEPRFHQIAKDFIDFIDGAE----IVAHNAN-FDVSF 109
Query: 458 LLAECNDAGILLP--SDLLCIDSLIGFRKILKTTQKS 562
+ E + + P D+ I + K L QK+
Sbjct: 110 MDHEFSKLNPIGPKTKDICSILDSLAIAKRLHPGQKN 146
>UniRef50_A4CM07 Cluster: DNA polymerase III, epsilon subunit; n=1;
Robiginitalea biformata HTCC2501|Rep: DNA polymerase
III, epsilon subunit - Robiginitalea biformata HTCC2501
Length = 456
Score = 37.5 bits (83), Expect = 0.33
Identities = 36/127 (28%), Positives = 54/127 (42%)
Frame = +2
Query: 131 YVFFDIETTGLPFQXXNKTKXTELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDV 310
Y DIETTG + TE+ + + + S ++NP +I +
Sbjct: 2 YTVVDIETTG---NGIYGNRITEIALFNIDQGRI--------ADSYSTLVNPGCEIPAFI 50
Query: 311 VVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAGIL 490
LTG+T ++NAP F + A I +F + VAH+ N FDY I+ E G+
Sbjct: 51 TGLTGITTAMVRNAPDFSEIAPKIDAFSSGR----VFVAHSVN-FDYPIVRKEFERCGLD 105
Query: 491 LPSDLLC 511
LC
Sbjct: 106 FGRKKLC 112
>UniRef50_A2PLZ2 Cluster: Gp39; n=2; Vibrio cholerae|Rep: Gp39 -
Vibrio cholerae MAK 757
Length = 185
Score = 37.5 bits (83), Expect = 0.33
Identities = 20/57 (35%), Positives = 34/57 (59%)
Frame = +2
Query: 230 LDIQSGLPPIKKLSFVLNPEKKIHPDVVVLTGLTNESLKNAPTFKQRANAIVSFLNE 400
+D Q+G IK S ++NP I P+V + G+TN+ + + PTF + N I +L++
Sbjct: 31 IDAQTG---IKLYSSLVNPLCSISPEVTAIHGITNDMVIDMPTFDKVWNDIKGYLSD 84
>UniRef50_A1K1I0 Cluster: DNA-directed DNA polymerase; n=24;
Proteobacteria|Rep: DNA-directed DNA polymerase -
Azoarcus sp. (strain BH72)
Length = 231
Score = 37.5 bits (83), Expect = 0.33
Identities = 37/140 (26%), Positives = 62/140 (44%)
Frame = +2
Query: 122 ITTYVFFDIETTGLPFQXXNKTKXTELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIH 301
+ TY D ETTG+ + + + TE+ + V + I + ++N +
Sbjct: 28 LDTYAVIDFETTGMAPE--HGARPTEIAVVLVRNGCV--------IDRYQSLMNAGVHVP 77
Query: 302 PDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDA 481
++ LTG+TN ++ AP Q F+ LVAHN +FD K AE +
Sbjct: 78 YEIQALTGITNAMVRAAPPLAQVMAQAADFVGS----HALVAHNA-AFDRKFWDAELDRL 132
Query: 482 GILLPSDLLCIDSLIGFRKI 541
G +D +C SL+ R++
Sbjct: 133 GRRREADFVC--SLLLSRRV 150
>UniRef50_Q8CUQ0 Cluster: Hypothetical conserved protein; n=1;
Oceanobacillus iheyensis|Rep: Hypothetical conserved
protein - Oceanobacillus iheyensis
Length = 195
Score = 37.1 bits (82), Expect = 0.44
Identities = 28/118 (23%), Positives = 52/118 (44%)
Frame = +2
Query: 146 IETTGLPFQXXNKTKXTELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDVVVLTG 325
++ + F+ N+ + + V +D +I I + ++NP V + G
Sbjct: 2 VKFAAIDFETANEKRNSACSVGVVIMNDTEI------IDEFYTLINPLASFRSGNVFIHG 55
Query: 326 LTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAGILLPS 499
+T E ++ APTF + + ++L + L+AHN SFD +L N I P+
Sbjct: 56 ITEEQVQEAPTFAELWPTLSAYLED----TILIAHNA-SFDMSVLRQSLNKYDIPCPN 108
>UniRef50_Q2GDU1 Cluster: DNA polymerase III, epsilon subunit; n=1;
Neorickettsia sennetsu str. Miyayama|Rep: DNA polymerase
III, epsilon subunit - Neorickettsia sennetsu (strain
Miyayama)
Length = 228
Score = 37.1 bits (82), Expect = 0.44
Identities = 34/112 (30%), Positives = 53/112 (47%)
Frame = +2
Query: 134 VFFDIETTGLPFQXXNKTKXTELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDVV 313
V D ETTGL + N + E+ + V D I + LNPE++I +
Sbjct: 7 VILDTETTGLDMK--NGDRVIEIGCVEVV--DFRITGEI-----FHIYLNPEREISKEAT 57
Query: 314 VLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAE 469
+ G+T E L ++P F A+ + F++ +VAHN SFD + L +E
Sbjct: 58 RVHGITFEQLADSPKFIDIADDFLKFIDSSE----IVAHNA-SFDIRFLNSE 104
>UniRef50_Q1VJ53 Cluster: DNA polymerase III subunit epsilon; n=1;
Psychroflexus torquis ATCC 700755|Rep: DNA polymerase
III subunit epsilon - Psychroflexus torquis ATCC 700755
Length = 226
Score = 37.1 bits (82), Expect = 0.44
Identities = 28/109 (25%), Positives = 55/109 (50%)
Frame = +2
Query: 134 VFFDIETTGLPFQXXNKTKXTELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDVV 313
+ DIETTGL ++ + + E+ + +++ ++ +NP K + + +
Sbjct: 4 IILDIETTGLDYKEGH--RIIEIGCVELNQKEVG--------SNFHQYINPLKTLTDENI 53
Query: 314 VLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKIL 460
+ G+TNE L++ P F+ A+ ++F+ K ++AHN N FD L
Sbjct: 54 KIHGITNEFLEDKPLFEDVADKFLNFI----KDSQIIAHNAN-FDVGFL 97
>UniRef50_Q1K1G2 Cluster: DNA polymerase III, epsilon subunit; n=4;
Proteobacteria|Rep: DNA polymerase III, epsilon subunit
- Desulfuromonas acetoxidans DSM 684
Length = 217
Score = 37.1 bits (82), Expect = 0.44
Identities = 21/65 (32%), Positives = 35/65 (53%)
Frame = +2
Query: 275 VLNPEKKIHPDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYK 454
++NP ++ + TG+TN+ L+ AP ++ + F+ P LVAHN SFD +
Sbjct: 48 LMNPGFRVSSFIEEFTGITNDELRRAPRCEEVMHQFSEFIGGAP----LVAHNA-SFDQR 102
Query: 455 ILLAE 469
L +E
Sbjct: 103 FLKSE 107
>UniRef50_Q4QGE6 Cluster: Mitochondrial DNA polymerase I protein B,
putative; n=3; Leishmania|Rep: Mitochondrial DNA
polymerase I protein B, putative - Leishmania major
Length = 1429
Score = 37.1 bits (82), Expect = 0.44
Identities = 52/170 (30%), Positives = 77/170 (45%), Gaps = 13/170 (7%)
Frame = +2
Query: 119 RITTY--VFFDIETTGLPFQXXNKTKXTELCFLAVSRDDLDIQSGLPPIKKLSF--VLNP 286
++ TY VFFDIETTGL T+ + V+ D PI+ +F ++NP
Sbjct: 758 KLKTYRVVFFDIETTGL-------NPSTD-AIVEVAMFD--------PIENSTFHTLVNP 801
Query: 287 EKKIHPDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKP-------ICLVAHNGNSF 445
++ I P V + +TN +++APT A +I +L L K + LV HN S
Sbjct: 802 QRPITPRTVGIHHITNAMVRDAPTVDVVAKSIGQYL-RLDKASYNPHEILVLVGHNVFSV 860
Query: 446 DYKIL--LAECNDAGILLPSDLLCIDSLIGFRKILKTTQKSLPLKMNTSK 589
D +L EC+ L L C DSL +L + L +M T +
Sbjct: 861 DEPMLRRALECHAPECQLDGILFC-DSL----ALLNAHRSELRWRMRTKR 905
>UniRef50_Q9PJK6 Cluster: DNA polymerase III, epsilon subunit,
putative; n=3; Chlamydia|Rep: DNA polymerase III,
epsilon subunit, putative - Chlamydia muridarum
Length = 250
Score = 36.7 bits (81), Expect = 0.59
Identities = 34/132 (25%), Positives = 60/132 (45%), Gaps = 1/132 (0%)
Frame = +2
Query: 131 YVFFDIETTGLPFQXXNKTKXTELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDV 310
+V D ETTGL + K + E + + D++ I + F+++PE+ + +
Sbjct: 9 FVCLDCETTGLDVK---KDRVIEFAAIRFTFDEV--------IDSVEFLIHPERAVSAES 57
Query: 311 VVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAG-I 487
+ +++ LK+ P F + + I F E +V H+ FD ++L E G
Sbjct: 58 QKIHKISDAMLKDKPKFSEVFSTIKGFFKERD---YIVGHH-VGFDLQVLSQESERLGET 113
Query: 488 LLPSDLLCIDSL 523
LLP ID+L
Sbjct: 114 LLPKQHYVIDTL 125
>UniRef50_Q30T43 Cluster: Exonuclease; n=1; Thiomicrospira
denitrificans ATCC 33889|Rep: Exonuclease -
Thiomicrospira denitrificans (strain ATCC 33889 / DSM
1351)
Length = 234
Score = 36.7 bits (81), Expect = 0.59
Identities = 34/110 (30%), Positives = 48/110 (43%)
Frame = +2
Query: 134 VFFDIETTGLPFQXXNKTKXTELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDVV 313
+F D+ETTGL N K + + VS + K V N KKI
Sbjct: 3 IFLDVETTGLE----NGDKICSIGIICVSETAI--------FSKYELV-NEGKKISSKAS 49
Query: 314 VLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILL 463
+ +TNE +K+ P FK + N + ++AHN N FD K+LL
Sbjct: 50 SINHITNEMIKDKPKFKDSKTWEILHENN-NQSSTIIAHNVN-FDLKMLL 97
>UniRef50_Q1UAN0 Cluster: DNA polymerase III, epsilon subunit; n=1;
Lactobacillus reuteri 100-23|Rep: DNA polymerase III,
epsilon subunit - Lactobacillus reuteri 100-23
Length = 283
Score = 36.7 bits (81), Expect = 0.59
Identities = 34/115 (29%), Positives = 53/115 (46%)
Frame = +2
Query: 125 TTYVFFDIETTGLPFQXXNKTKXTELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHP 304
T+YV D ETTGL +K +L + D L + ++NP+ +
Sbjct: 13 TSYVSVDTETTGLYPMYGDKI--IQLSAIKYIDDKL--------VDTFDTLINPDGS-NN 61
Query: 305 DVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAE 469
+ + ++ SLKN PTF + V+F+ +LP V HN SFD+ L +E
Sbjct: 62 NAKSVNNISESSLKNQPTFDEVIGDFVNFVEDLP----WVGHN-LSFDFSFLKSE 111
>UniRef50_A5Z9S3 Cluster: Putative uncharacterized protein; n=1;
Eubacterium ventriosum ATCC 27560|Rep: Putative
uncharacterized protein - Eubacterium ventriosum ATCC
27560
Length = 1474
Score = 36.7 bits (81), Expect = 0.59
Identities = 38/138 (27%), Positives = 59/138 (42%)
Frame = +2
Query: 131 YVFFDIETTGLPFQXXNKTKXTELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDV 310
YV FD+ETTG K E+ + V + I + S +NPE I +
Sbjct: 409 YVVFDLETTGF---SAKSDKIIEIGAVKVENGKI--------IDRFSTFVNPEIPIPFRI 457
Query: 311 VVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAGIL 490
LT + +E + +AP ++ I+ E K +VAHN + FD + A C
Sbjct: 458 EKLTSINDEMVIDAPKIEE----ILPQFMEFCKDSVMVAHN-SDFDMSFIEANCKRQD-- 510
Query: 491 LPSDLLCIDSLIGFRKIL 544
L D ID++ R ++
Sbjct: 511 LECDFTVIDTVAMSRYLI 528
>UniRef50_A5UUI5 Cluster: DNA polymerase III, epsilon subunit; n=5;
Chloroflexi (class)|Rep: DNA polymerase III, epsilon
subunit - Roseiflexus sp. RS-1
Length = 956
Score = 36.7 bits (81), Expect = 0.59
Identities = 31/113 (27%), Positives = 53/113 (46%)
Frame = +2
Query: 131 YVFFDIETTGLPFQXXNKTKXTELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDV 310
Y+ D+ETTGL + E+ + + D++ ++ S ++ P + +
Sbjct: 5 YIAIDVETTGLE---AGVDEIIEIAAVKFNADEV--------LETFSTLVQPVHSLPLNS 53
Query: 311 VVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAE 469
LTG+T + L +AP F + A +FL P LV HN FD ++L A+
Sbjct: 54 SRLTGITADMLASAPRFAEVAPRFAAFLKNYP----LVGHN-VEFDLRMLRAQ 101
>UniRef50_A0NJE4 Cluster: DNA helicase, Rad3-related family; n=2;
Oenococcus oeni|Rep: DNA helicase, Rad3-related family -
Oenococcus oeni ATCC BAA-1163
Length = 489
Score = 36.7 bits (81), Expect = 0.59
Identities = 25/71 (35%), Positives = 35/71 (49%)
Frame = +2
Query: 257 IKKLSFVLNPEKKIHPDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNG 436
I ++NP KI +V LTG+ NE ++NAP F+ A I L+ VAHN
Sbjct: 38 INNFQTMVNPGVKIPEQIVDLTGIKNEDVENAPYFEDLARMIHDQLS----GTVFVAHNV 93
Query: 437 NSFDYKILLAE 469
+D+ L E
Sbjct: 94 R-YDFPYLNGE 103
>UniRef50_Q9CGW0 Cluster: DNA polymerase III, epsilon chain; n=3;
Lactococcus lactis|Rep: DNA polymerase III, epsilon
chain - Lactococcus lactis subsp. lactis (Streptococcus
lactis)
Length = 277
Score = 36.3 bits (80), Expect = 0.77
Identities = 39/145 (26%), Positives = 59/145 (40%)
Frame = +2
Query: 131 YVFFDIETTGLPFQXXNKTKXTELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDV 310
YV FD ETTG Q K + ++ AV D+ + + + V N + ++
Sbjct: 5 YVVFDFETTGFSAQ---KNEIIQIG--AVKYDENNQEQA----RFNQLVKNQRSYVSTEI 55
Query: 311 VVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAGIL 490
LTG+ L N PT ++ + F+ K LVAHN FD L D I
Sbjct: 56 TQLTGIKPADLLNQPTIEEILPEFLDFI----KGHLLVAHNA-PFDISFLYQAIIDCAIT 110
Query: 491 LPSDLLCIDSLIGFRKILKTTQKSL 565
D+L +K+L + +L
Sbjct: 111 DVEAFRVYDTLAESKKLLTMSSYAL 135
>UniRef50_Q03WE5 Cluster: Rad3-related DNA helicase; n=1;
Leuconostoc mesenteroides subsp. mesenteroides ATCC
8293|Rep: Rad3-related DNA helicase - Leuconostoc
mesenteroides subsp. mesenteroides (strain ATCC 8293
/NCDO 523)
Length = 797
Score = 36.3 bits (80), Expect = 0.77
Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 6/92 (6%)
Frame = +2
Query: 236 IQSGLPPIKKLSFV------LNPEKKIHPDVVVLTGLTNESLKNAPTFKQRANAIVSFLN 397
IQ G+ IKK V +NP + I + LT ++ + ++NAP F++ I L
Sbjct: 26 IQIGMTFIKKRQIVDHFESFVNPGQLIDRQIQQLTHISQKDVQNAPYFEE----IAPLLQ 81
Query: 398 ELPKPICLVAHNGNSFDYKILLAECNDAGILL 493
L + ++AHN N FDY L E G L
Sbjct: 82 NLLQNTVIIAHNVN-FDYPYLNDEFERTGFPL 112
>UniRef50_A5IU60 Cluster: Exonuclease, RNase T and DNA polymerase
III; n=16; Staphylococcus|Rep: Exonuclease, RNase T and
DNA polymerase III - Staphylococcus aureus subsp. aureus
JH9
Length = 184
Score = 36.3 bits (80), Expect = 0.77
Identities = 21/75 (28%), Positives = 39/75 (52%)
Frame = +2
Query: 275 VLNPEKKIHPDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYK 454
++NP+ + + G+ E ++NAPTF ++ F+ +LP +VAHN +FD
Sbjct: 41 LVNPQDYFSQQNIKVHGIQPEDVENAPTFDYVFPYMMQFIADLP----VVAHNA-AFDMN 95
Query: 455 ILLAECNDAGILLPS 499
+L + G+ P+
Sbjct: 96 VLHQSIQNIGLPTPN 110
>UniRef50_A1YZY0 Cluster: Gram-positive type DNA polymerase III
alpha subunit; n=2; unclassified Myoviridae|Rep:
Gram-positive type DNA polymerase III alpha subunit -
Burkholderia ambifaria phage BcepF1
Length = 197
Score = 36.3 bits (80), Expect = 0.77
Identities = 43/159 (27%), Positives = 62/159 (38%), Gaps = 10/159 (6%)
Frame = +2
Query: 131 YVFFDIETTGLPFQXXNKTKXTE--LCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHP 304
+ FD ETTGLP + F + D DI + L F NP +
Sbjct: 3 FTVFDTETTGLPSHPLAPLDRQPRIIEFAGIVTDGRDI------LHTLEFRCNPGVALEE 56
Query: 305 DVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKP--------ICLVAHNGNSFDYKIL 460
+ +TGLT+ L++ P + SF + P P VAHN SFD +L
Sbjct: 57 IITKITGLTDADLRDQPDISHFFGELKSFFGKEPMPHVFGEKPKFARVAHN-LSFDRNLL 115
Query: 461 LAECNDAGILLPSDLLCIDSLIGFRKILKTTQKSLPLKM 577
+ G L D+ D+L+ T Q P+K+
Sbjct: 116 DYDLKRRGKTL-DDIGFNDALMICTVEQTTPQFGRPMKL 153
>UniRef50_P43745 Cluster: DNA polymerase III subunit epsilon; n=40;
Proteobacteria|Rep: DNA polymerase III subunit epsilon -
Haemophilus influenzae
Length = 256
Score = 36.3 bits (80), Expect = 0.77
Identities = 20/79 (25%), Positives = 39/79 (49%)
Frame = +2
Query: 278 LNPEKKIHPDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKI 457
+ P++ PD + + G+T+E L + P FK+ A + ++N L+ HN FD
Sbjct: 51 IKPDRPXDPDAIKVHGITDEMLADKPEFKEVAQDFLDYINGAE----LLIHNA-PFDVGF 105
Query: 458 LLAECNDAGILLPSDLLCI 514
+ E + + +D +C+
Sbjct: 106 MDYEFRKLNLNVKTDDICL 124
>UniRef50_Q88WB1 Cluster: ATP-dependent helicase DinG; n=2;
Lactobacillus|Rep: ATP-dependent helicase DinG -
Lactobacillus plantarum
Length = 934
Score = 35.9 bits (79), Expect = 1.0
Identities = 40/151 (26%), Positives = 64/151 (42%), Gaps = 1/151 (0%)
Frame = +2
Query: 125 TTYVFFDIETTGLPFQXXNKTKXTELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHP 304
TTY DIETTG + ++ F+ ++ I + +NP +
Sbjct: 5 TTYAVVDIETTGTSVKDGDRIIQIGCAFVKNNKI----------INTFATDVNPLTTVPA 54
Query: 305 DVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAG 484
+ LTG++N ++ AP F A + S L + VAHN N FD + +E G
Sbjct: 55 VIENLTGISNARVRKAPPFDDLAGTVYSLL----QGTVFVAHNVN-FDLPFINSELQRVG 109
Query: 485 I-LLPSDLLCIDSLIGFRKILKTTQKSLPLK 574
LP + +D+ + +IL T S L+
Sbjct: 110 YPELP--IQAVDT-VSLSQILLPTASSFRLR 137
>UniRef50_Q6M3W0 Cluster: DNA polymerase III epsilon subunit or
related 3'-5' exonuclease; n=4; Corynebacterium|Rep: DNA
polymerase III epsilon subunit or related 3'-5'
exonuclease - Corynebacterium glutamicum (Brevibacterium
flavum)
Length = 476
Score = 35.9 bits (79), Expect = 1.0
Identities = 24/82 (29%), Positives = 37/82 (45%)
Frame = +2
Query: 323 GLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAGILLPSD 502
G+T E + + P F +V F+ +LP LVAHN FD+ L C +GI +P
Sbjct: 178 GITPEMVADQPRFADLVPKMVEFVGDLP----LVAHNA-QFDFTALSRACAASGIDVPEM 232
Query: 503 LLCIDSLIGFRKILKTTQKSLP 568
+ + + L+ LP
Sbjct: 233 IYGCSLTLARNEKLQVENHKLP 254
>UniRef50_Q9ZHF6 Cluster: DNA polymerase III polC-type; n=3;
Thermotogales|Rep: DNA polymerase III polC-type -
Thermotoga maritima
Length = 1367
Score = 35.9 bits (79), Expect = 1.0
Identities = 31/111 (27%), Positives = 50/111 (45%)
Frame = +2
Query: 128 TYVFFDIETTGLPFQXXNKTKXTELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPD 307
T+V D ETTGL Q + + IQ G + + ++ P ++I
Sbjct: 357 TFVVLDFETTGLDPQVDE----------IIEIGAVKIQGG-QIVDEYHTLIKPSREISRK 405
Query: 308 VVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKIL 460
+TG+T E L+N + ++ + FL + +VAHN N FDY+ L
Sbjct: 406 SSEITGITQEMLENKRSIEEVLPEFLGFLED----SIIVAHNAN-FDYRFL 451
>UniRef50_P54394 Cluster: Probable ATP-dependent helicase dinG
homolog; n=5; Bacillus|Rep: Probable ATP-dependent
helicase dinG homolog - Bacillus subtilis
Length = 931
Score = 35.9 bits (79), Expect = 1.0
Identities = 34/122 (27%), Positives = 58/122 (47%)
Frame = +2
Query: 131 YVFFDIETTGLPFQXXNKTKXTELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDV 310
+V D+ETTG + K ++ +A + I++G ++ S +NP K I +
Sbjct: 6 FVVIDVETTG-----NSPKKGDKIIQIAA----VVIENG-QITERFSKYINPNKSIPAFI 55
Query: 311 VVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAGIL 490
LTG++N+ ++N F+ A + L+ VAHN + FD + E + AG
Sbjct: 56 EQLTGISNQMVENEQPFEAVAEEVFQLLD----GAYFVAHNIH-FDLGFVKYELHKAGFQ 110
Query: 491 LP 496
LP
Sbjct: 111 LP 112
>UniRef50_Q60AW7 Cluster: DNA polymerase III, epsilon subunit; n=7;
Gammaproteobacteria|Rep: DNA polymerase III, epsilon
subunit - Methylococcus capsulatus
Length = 267
Score = 35.5 bits (78), Expect = 1.4
Identities = 20/61 (32%), Positives = 33/61 (54%)
Frame = +2
Query: 278 LNPEKKIHPDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKI 457
+NPE++I + + GLTNE L P F+ A+ ++F++ L+ HN +FD
Sbjct: 43 INPEREIDAGAIEVHGLTNEFLAGMPVFRNIADDFLNFISGAE----LIIHNA-AFDVGF 97
Query: 458 L 460
L
Sbjct: 98 L 98
>UniRef50_Q057S0 Cluster: DNA polymerase III, e subunit; n=1;
Buchnera aphidicola str. Cc (Cinara cedri)|Rep: DNA
polymerase III, e subunit - Buchnera aphidicola subsp.
Cinara cedri
Length = 231
Score = 35.5 bits (78), Expect = 1.4
Identities = 30/109 (27%), Positives = 47/109 (43%)
Frame = +2
Query: 134 VFFDIETTGLPFQXXNKTKXTELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDVV 313
VF DIETTG+ NK L + ++ + + + + L P++ I
Sbjct: 9 VFLDIETTGM-----NKYGCIYLNHKIIEIGIIETINRKYTGRYIHYYLYPQRSIESSAY 63
Query: 314 VLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKIL 460
+ G++ L N PTFK I +F+ K ++ HN N FD L
Sbjct: 64 KIHGISESFLSNKPTFKDIYKEIFNFI----KNSEIIVHNSN-FDISFL 107
>UniRef50_A5CE47 Cluster: DNA polymerase III epsilon chain; n=1;
Orientia tsutsugamushi Boryong|Rep: DNA polymerase III
epsilon chain - Orientia tsutsugamushi (strain Boryong)
(Rickettsia tsutsugamushi)
Length = 222
Score = 35.5 bits (78), Expect = 1.4
Identities = 26/112 (23%), Positives = 54/112 (48%)
Frame = +2
Query: 134 VFFDIETTGLPFQXXNKTKXTELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDVV 313
+ D ET+GL + ++ E+ + + D +I++ + +NPE+ I +
Sbjct: 5 IVLDTETSGLDHKQGHRI--IEIGAVELDSDCTEIRN------TFHYYINPERDISKEAY 56
Query: 314 VLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAE 469
+ GL+ + L + P F++ + + F++ L+ HN N FD + L +E
Sbjct: 57 KVHGLSRDFLSDKPKFREIVDEFLQFIDRAQ----LIMHNAN-FDMQFLNSE 103
>UniRef50_A4TVW6 Cluster: DNA polymerase III, epsilon subunit; n=4;
Magnetospirillum|Rep: DNA polymerase III, epsilon
subunit - Magnetospirillum gryphiswaldense
Length = 677
Score = 35.5 bits (78), Expect = 1.4
Identities = 32/131 (24%), Positives = 58/131 (44%)
Frame = +2
Query: 116 VRITTYVFFDIETTGLPFQXXNKTKXTELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKK 295
+R T++ FD ETTGL Q + ++ + + I SG + + ++NP +
Sbjct: 479 LRSLTFIVFDTETTGL--QPSQGDQIVQIGAVRIVNGR--ILSG----ESFNRIVNPGRV 530
Query: 296 IHPDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECN 475
I P+ + G+T++ +K+ P ++ LVAHN +FD K L
Sbjct: 531 IPPESIKFHGITDDMVKDKPPL----GVVLPQFKAFAADAVLVAHNA-AFDLKFLRMNER 585
Query: 476 DAGILLPSDLL 508
G+ + +L
Sbjct: 586 QFGLKFDNPVL 596
>UniRef50_A4ECT2 Cluster: Putative uncharacterized protein; n=1;
Collinsella aerofaciens ATCC 25986|Rep: Putative
uncharacterized protein - Collinsella aerofaciens ATCC
25986
Length = 964
Score = 35.5 bits (78), Expect = 1.4
Identities = 28/105 (26%), Positives = 50/105 (47%)
Frame = +2
Query: 134 VFFDIETTGLPFQXXNKTKXTELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDVV 313
+ D ETTGL Q EL ++ +R SG + + ++P++ I ++
Sbjct: 39 IVLDTETTGLSVQD------NELIEISAAR-----LSGREVVDRFDTFVHPKQLIPAEIT 87
Query: 314 VLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFD 448
LT +TN + +AP+ + A+ F+ P ++AHN +FD
Sbjct: 88 ELTSITNADVADAPSAVEAVAALADFVGGCP----VIAHNA-TFD 127
>UniRef50_Q73L66 Cluster: DNA polymerase III domain protein; n=1;
Treponema denticola|Rep: DNA polymerase III domain
protein - Treponema denticola
Length = 217
Score = 35.1 bits (77), Expect = 1.8
Identities = 23/76 (30%), Positives = 38/76 (50%)
Frame = +2
Query: 257 IKKLSFVLNPEKKIHPDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNG 436
I + + +++PEK + P+ + +T+E L P F A + FL+ + + LVAHN
Sbjct: 47 IARYNVLIDPEKPMPPEAGKVNQITDEMLAGQPKF---AEVLPDFLDFIRNTV-LVAHNA 102
Query: 437 NSFDYKILLAECNDAG 484
SFD + E G
Sbjct: 103 -SFDINFINCELERCG 117
>UniRef50_Q05FQ3 Cluster: DNA polymerase III epsilon subunit; n=1;
Candidatus Carsonella ruddii PV|Rep: DNA polymerase III
epsilon subunit - Carsonella ruddii (strain PV)
Length = 181
Score = 35.1 bits (77), Expect = 1.8
Identities = 40/160 (25%), Positives = 69/160 (43%), Gaps = 7/160 (4%)
Frame = +2
Query: 134 VFFDIETTGLPFQXXNKTKXTELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDVV 313
+F D+ETTGL + ++ + +++ +G + NPE KI
Sbjct: 5 IFLDVETTGLFVEHGDRI---------IEIGCVEVINGHLTGRVFHSYFNPEVKITQGAF 55
Query: 314 VLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNG----NSFDYKILLAECNDA 481
+ G+ ++ L P F ++ N + F+N ++AHN N + +I L
Sbjct: 56 NVHGIKDDFLLLKPMFYEKINEFIGFINN----STIIAHNAKFDINFINKEIYLTNFKIK 111
Query: 482 GILLPSDLLCIDSLIGFRKIL---KTTQKSLPLKMNTSKD 592
I +++L DSL+ FRK+ K L LK N K+
Sbjct: 112 KIQNYANIL--DSLLLFRKLYPRKKNNLNDLCLKFNLIKN 149
>UniRef50_Q04A97 Cluster: DNA polymerase III, epsilon subunit
related 3'-5' exonuclease; n=2; Lactobacillus
delbrueckii subsp. bulgaricus|Rep: DNA polymerase III,
epsilon subunit related 3'-5' exonuclease -
Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC
BAA-365)
Length = 261
Score = 35.1 bits (77), Expect = 1.8
Identities = 35/114 (30%), Positives = 51/114 (44%)
Frame = +2
Query: 119 RITTYVFFDIETTGLPFQXXNKTKXTELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKI 298
++ Y FD+ETTG K ++ L V RDD + K S +NP +KI
Sbjct: 4 KLHDYTVFDLETTG--------KKIIQIGALKV-RDD-------QTVAKFSTYVNPLEKI 47
Query: 299 HPDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKIL 460
+ V LTG++N AP + + F+ + LV HN SFD +L
Sbjct: 48 NDYVSHLTGISNYQTDAAPLIDEVMPDFLDFVGD----DTLVGHNILSFDCNVL 97
>UniRef50_A6DDM5 Cluster: DNA polymerase III, epsilon chain; n=1;
Caminibacter mediatlanticus TB-2|Rep: DNA polymerase
III, epsilon chain - Caminibacter mediatlanticus TB-2
Length = 274
Score = 35.1 bits (77), Expect = 1.8
Identities = 21/74 (28%), Positives = 38/74 (51%)
Frame = +2
Query: 260 KKLSFVLNPEKKIHPDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGN 439
K++ +LNP+ KI + + + E L++ PTF+++ I+ N + +V HN
Sbjct: 134 KEIYELLNPKAKISEEAYEVHKIKQEDLEDKPTFEEKKEYILDLFNSVD---MIVGHN-V 189
Query: 440 SFDYKILLAECNDA 481
FD+ +L E A
Sbjct: 190 FFDFGVLKRELERA 203
>UniRef50_A5MUE3 Cluster: Putative uncharacterized protein; n=1;
Streptococcus pneumoniae SP23-BS72|Rep: Putative
uncharacterized protein - Streptococcus pneumoniae
SP23-BS72
Length = 308
Score = 35.1 bits (77), Expect = 1.8
Identities = 19/58 (32%), Positives = 32/58 (55%)
Frame = +2
Query: 275 VLNPEKKIHPDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFD 448
++NPE+K + + + E + APTF + I++F++ LP +VAHN FD
Sbjct: 40 LINPEEKFSSRNIKIHAIKPEDVIGAPTFPEVQKEIINFIDNLP----IVAHNAR-FD 92
>UniRef50_Q5ZLQ8 Cluster: Putative uncharacterized protein; n=2;
Gallus gallus|Rep: Putative uncharacterized protein -
Gallus gallus (Chicken)
Length = 1087
Score = 34.7 bits (76), Expect = 2.4
Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Frame = +2
Query: 380 IVSFLNELPKPICLVAHNGNSFDYKILLAECN-DAGILLPSDLLCIDSLIGFRKILKTTQ 556
I FL+ELPKP+ A N F++K +L A + L S +C+DSL+G + Q
Sbjct: 747 ICKFLSELPKPLSTYA---NYFEWKSVLPPIQARAELHLGSLSVCVDSLVGEGAFAQVYQ 803
Query: 557 KSLPLKMNTSKDDSASELLWPELDVSTENWE 649
S+ +N S S ++++ ++ WE
Sbjct: 804 ASV---LNASDPRSNQKVIF-KVQKPANPWE 830
>UniRef50_Q3VN57 Cluster: Exonuclease; n=2; Chlorobium/Pelodictyon
group|Rep: Exonuclease - Pelodictyon phaeoclathratiforme
BU-1
Length = 190
Score = 34.7 bits (76), Expect = 2.4
Identities = 38/126 (30%), Positives = 55/126 (43%), Gaps = 7/126 (5%)
Frame = +2
Query: 131 YVFFDIETTGLP-------FQXXNKTKXTELCFLAVSRDDLDIQSGLPPIKKLSFVLNPE 289
Y+FFD ETTGLP N + +L +L+ + + SG IK FV
Sbjct: 2 YLFFDTETTGLPRNWRAPVTDVDNWPRLVQLAYLSFDAEGNQLFSGDAIIKPEGFV---- 57
Query: 290 KKIHPDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAE 469
I V + G++ + + K + SF + LVAHN SFD KI+ +E
Sbjct: 58 --IPSSAVQIHGISTQ--RALLEGKPLGQVLQSFYELVADAEVLVAHN-ISFDEKIVGSE 112
Query: 470 CNDAGI 487
AG+
Sbjct: 113 LIRAGM 118
>UniRef50_Q0A6Z2 Cluster: Putative PAS/PAC sensor protein precursor;
n=1; Alkalilimnicola ehrlichei MLHE-1|Rep: Putative
PAS/PAC sensor protein precursor - Alkalilimnicola
ehrlichei (strain MLHE-1)
Length = 714
Score = 34.7 bits (76), Expect = 2.4
Identities = 32/127 (25%), Positives = 58/127 (45%)
Frame = +2
Query: 128 TYVFFDIETTGLPFQXXNKTKXTELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPD 307
++V FD E TGL N E+ +A R + + + ++NP + I P
Sbjct: 508 SFVVFDCEMTGL-----NPEGGDEIISIAGVRV---VNGRVLTGETFDRIINPGRPIPPG 559
Query: 308 VVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAGI 487
V G+T++ +++ P + SF+ + LVAHN +FD K + + +AG+
Sbjct: 560 SVRFHGITDDDVQDKPPIEVVLPQFKSFVGD----AVLVAHNA-AFDMKFISMKEREAGV 614
Query: 488 LLPSDLL 508
+ +L
Sbjct: 615 RFDNPVL 621
>UniRef50_Q54KG0 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 551
Score = 34.7 bits (76), Expect = 2.4
Identities = 28/94 (29%), Positives = 45/94 (47%)
Frame = +2
Query: 284 PEKKIHPDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILL 463
P+ +IHP + LT+ L +AP + + + ++ P LVAHN +FD +IL+
Sbjct: 341 PKAQIHPVSEQIHQLTSLQLMSAPPIEIILASFMDWVGNSP----LVAHN-LAFDKRILI 395
Query: 464 AECNDAGILLPSDLLCIDSLIGFRKILKTTQKSL 565
E I D +C ++ F+KI SL
Sbjct: 396 QELIRYNIPFNIDHICFCTMKYFKKIYNGLNYSL 429
>UniRef50_P47277 Cluster: DNA polymerase III polC-type; n=10;
Mycoplasma|Rep: DNA polymerase III polC-type -
Mycoplasma genitalium
Length = 1451
Score = 34.7 bits (76), Expect = 2.4
Identities = 31/111 (27%), Positives = 52/111 (46%)
Frame = +2
Query: 128 TYVFFDIETTGLPFQXXNKTKXTELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPD 307
T+V FDIETTGL + + + + + ++D Q F L +K I
Sbjct: 415 TFVIFDIETTGLHGRYDDVIEFSARKIK--NNSEIDHQQ---------FFLKIDKPIPKT 463
Query: 308 VVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKIL 460
+ +T +T+E L+ +Q I ++L++ +VAHNG +FD L
Sbjct: 464 ITEITKITDEMLEGGIDQQQGLEKIRNYLDDC----VMVAHNGINFDLPFL 510
>UniRef50_Q92GL1 Cluster: DNA polymerase III subunit epsilon; n=9;
Rickettsia|Rep: DNA polymerase III subunit epsilon -
Rickettsia conorii
Length = 230
Score = 34.7 bits (76), Expect = 2.4
Identities = 31/121 (25%), Positives = 54/121 (44%), Gaps = 3/121 (2%)
Frame = +2
Query: 260 KKLSFVLNPEKKIHPDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGN 439
+ F +NPE+ + + + G++ E LK+ P F A+ + F+++ L+ HN
Sbjct: 40 RNFHFYINPERDMPFEAYRIHGISGEFLKDKPLFHTIADDFLEFISDSK----LIIHNA- 94
Query: 440 SFDYKIL---LAECNDAGILLPSDLLCIDSLIGFRKILKTTQKSLPLKMNTSKDDSASEL 610
FD K L L+ I L ID+L+ R I ++ +L K D++
Sbjct: 95 PFDIKFLNHELSLLKRTDIKLLELANTIDTLVMARSIFPGSKYNLDALCKRFKVDNSGRQ 154
Query: 611 L 613
L
Sbjct: 155 L 155
>UniRef50_UPI0000510268 Cluster: COG0322: Nuclease subunit of the
excinuclease complex; n=1; Brevibacterium linens
BL2|Rep: COG0322: Nuclease subunit of the excinuclease
complex - Brevibacterium linens BL2
Length = 581
Score = 34.3 bits (75), Expect = 3.1
Identities = 33/116 (28%), Positives = 56/116 (48%), Gaps = 1/116 (0%)
Frame = +2
Query: 128 TYVFFDIETTGLPFQXXNKTKXTELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKK-IHP 304
T+V D+ETTG K++ TE+ + ++ + + ++ PE+ I P
Sbjct: 30 TFVIVDLETTGT---TAGKSEITEIGAVKTRGGEV--------LGEFQSLVKPEESVISP 78
Query: 305 DVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAEC 472
V LTG+T+ + +AP+ + + + SFL E LVAHN FD + + C
Sbjct: 79 FVARLTGITHAMVDDAPSIR---SVLPSFL-EFCVGAVLVAHNA-PFDIGFIRSAC 129
>UniRef50_Q9K6I8 Cluster: BH3741 protein; n=1; Bacillus
halodurans|Rep: BH3741 protein - Bacillus halodurans
Length = 219
Score = 34.3 bits (75), Expect = 3.1
Identities = 32/118 (27%), Positives = 50/118 (42%)
Frame = +2
Query: 116 VRITTYVFFDIETTGLPFQXXNKTKXTELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKK 295
+R + FD ETTG F + E+ AV + L++ +NPE+
Sbjct: 22 IRQLAFTVFDTETTG--FAVGAGDRLIEVA--AVHVEGLEVTDFT-----FQTYVNPERN 72
Query: 296 IHPDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAE 469
I ++ LTG++ + +KNAP + F+ E V H SFD +L E
Sbjct: 73 IPAEIEELTGISEDKVKNAPASLPAIESFFRFV-EQSGSAAWVGHYA-SFDVTVLKKE 128
>UniRef50_Q7MAI6 Cluster: DNA POLYMERASE III EPSILON SUBUNIT DNAQ;
n=1; Wolinella succinogenes|Rep: DNA POLYMERASE III
EPSILON SUBUNIT DNAQ - Wolinella succinogenes
Length = 206
Score = 34.3 bits (75), Expect = 3.1
Identities = 22/66 (33%), Positives = 34/66 (51%)
Frame = +2
Query: 290 KKIHPDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAE 469
K++ + +TG+T+E LK+AP+ K+ FL + VAHN FDY L A
Sbjct: 57 KEVPEYITKITGITSEELKDAPSMKEVLTRFRLFLGD----AVFVAHNA-LFDYGFLGAM 111
Query: 470 CNDAGI 487
+G+
Sbjct: 112 MKRSGM 117
>UniRef50_Q5GS93 Cluster: DNA polymerase III epsilon subunit; n=4;
Wolbachia|Rep: DNA polymerase III epsilon subunit -
Wolbachia sp. subsp. Brugia malayi (strain TRS)
Length = 231
Score = 34.3 bits (75), Expect = 3.1
Identities = 37/135 (27%), Positives = 58/135 (42%)
Frame = +2
Query: 134 VFFDIETTGLPFQXXNKTKXTELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDVV 313
+ D ETTGL + ++ C ++R +P K LNPE+ I
Sbjct: 8 IVLDTETTGLDIESGHRIIEIG-CVELINR--------IPTGKVFHKYLNPERDIPYHSF 58
Query: 314 VLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAGILL 493
+ G++ E L++ P F ++ + FL+ + I L+ HN FD K L E L
Sbjct: 59 KIHGISEEFLEDKPLF---SDVVFEFLDFISGDI-LIIHNA-EFDIKFLNMELGKLNARL 113
Query: 494 PSDLLCIDSLIGFRK 538
S +D+L RK
Sbjct: 114 ISSDRVLDTLPLARK 128
>UniRef50_Q4JWC2 Cluster: Putative exonuclease; n=1; Corynebacterium
jeikeium K411|Rep: Putative exonuclease -
Corynebacterium jeikeium (strain K411)
Length = 198
Score = 34.3 bits (75), Expect = 3.1
Identities = 23/89 (25%), Positives = 44/89 (49%)
Frame = +2
Query: 134 VFFDIETTGLPFQXXNKTKXTELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDVV 313
+ D+ETTGL Q + + E+ L + +L K + +LNP + ++
Sbjct: 13 IVIDLETTGLRPQ---EERIIEIAALHIRNGELQ--------DKYTTLLNPNLSVPQEIT 61
Query: 314 VLTGLTNESLKNAPTFKQRANAIVSFLNE 400
LTG+++ L + PTF + +++FL +
Sbjct: 62 DLTGISDGLLADKPTFSEVMPELLNFLRD 90
>UniRef50_Q47RH7 Cluster: DNA polymerase III, epsilon subunit; n=1;
Thermobifida fusca YX|Rep: DNA polymerase III, epsilon
subunit - Thermobifida fusca (strain YX)
Length = 210
Score = 34.3 bits (75), Expect = 3.1
Identities = 23/72 (31%), Positives = 33/72 (45%)
Frame = +2
Query: 284 PEKKIHPDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILL 463
P D + + G+T E + +AP + Q I+ F P VAHN FD ++
Sbjct: 46 PVDHFEQDNIAVHGITPEHVADAPAWPQVHTTILEFAAGSP----FVAHNA-VFDMGVIR 100
Query: 464 AECNDAGILLPS 499
A C AG+ PS
Sbjct: 101 AACAHAGLPEPS 112
>UniRef50_Q3D960 Cluster: DnaQ family exonuclease/DinG family
helicase, putative; n=26; Streptococcus|Rep: DnaQ family
exonuclease/DinG family helicase, putative -
Streptococcus agalactiae COH1
Length = 835
Score = 34.3 bits (75), Expect = 3.1
Identities = 21/61 (34%), Positives = 32/61 (52%)
Frame = +2
Query: 278 LNPEKKIHPDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKI 457
+NP + + +V LTG+T++ L AP F Q A+ I + + VAHN FD +
Sbjct: 60 VNPHESLDEHIVHLTGITDKQLVKAPDFGQVAHHIYQLIED----CIFVAHN-VKFDANL 114
Query: 458 L 460
L
Sbjct: 115 L 115
>UniRef50_Q04F80 Cluster: DNA polymerase III, alpha subunit; n=2;
Oenococcus oeni|Rep: DNA polymerase III, alpha subunit -
Oenococcus oeni (strain BAA-331 / PSU-1)
Length = 1437
Score = 34.3 bits (75), Expect = 3.1
Identities = 38/147 (25%), Positives = 64/147 (43%)
Frame = +2
Query: 11 NVSQKSTCQSFIFFQHANFISSNSSCKSQKLIHKMVRITTYVFFDIETTGLPFQXXNKTK 190
+ S K T I+ AN++ + + ++++ Y FDIETTGL K
Sbjct: 371 SASAKKTGVKAIYGLEANYVEDGEAI-AINTNREILKDCQYTIFDIETTGL---SAVNDK 426
Query: 191 XTELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDVVVLTGLTNESLKNAPTFKQR 370
+L AV +++G+ + +NP + + LTG+T++ +KN+ K
Sbjct: 427 IIQLS--AVK-----MKNGVV-LDTFDQFINPGFPLSEQTINLTGITDDLVKNS---KPE 475
Query: 371 ANAIVSFLNELPKPICLVAHNGNSFDY 451
A + F + I L HN FDY
Sbjct: 476 AEVLKMFQQFYARTI-LAGHNVIKFDY 501
>UniRef50_A5IXK4 Cluster: DNA polymerase III alpha subunit; n=1;
Mycoplasma agalactiae|Rep: DNA polymerase III alpha
subunit - Mycoplasma agalactiae
Length = 1459
Score = 34.3 bits (75), Expect = 3.1
Identities = 39/137 (28%), Positives = 57/137 (41%), Gaps = 1/137 (0%)
Frame = +2
Query: 128 TYVFFDIETTGLPFQXXNKTKXTELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPD 307
+YV FDIETTGL K E+ + +DI L + F + P+ KI
Sbjct: 424 SYVSFDIETTGL------SPKFHEI----IEFGAVDINQDLKVGEVTQFFIKPQAKIGAF 473
Query: 308 VVVLTGLTNESL-KNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAG 484
LTG+T + L + K I L+ +AHN FD+ L +
Sbjct: 474 TTELTGITQQMLDSEGLSIKDGLQRIYDCLDGK----VAIAHNA-KFDFNFLKEQFRLNN 528
Query: 485 ILLPSDLLCIDSLIGFR 535
+ P ++ ID+LI R
Sbjct: 529 VPFP-NVTVIDTLIASR 544
>UniRef50_A3V111 Cluster: Exonuclease, DNA polymerase III, epsilon
subunit family; n=1; Loktanella vestfoldensis SKA53|Rep:
Exonuclease, DNA polymerase III, epsilon subunit family
- Loktanella vestfoldensis SKA53
Length = 469
Score = 34.3 bits (75), Expect = 3.1
Identities = 32/107 (29%), Positives = 47/107 (43%), Gaps = 1/107 (0%)
Frame = +2
Query: 116 VRITTYVFFDIETTG-LPFQXXNKTKXTELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEK 292
+R TYV FD ETTG LP NK + ++ L V + P + L ++NP +
Sbjct: 271 LRDLTYVVFDTETTGFLP----NKDEVVQIGALRV------VNGQQAPGEVLDLLVNPGR 320
Query: 293 KIHPDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHN 433
I + +T+ +K+AP SF + LVAHN
Sbjct: 321 AIPASSTAVHRITDAMVKDAPDMVHAGRKFHSFARD----AVLVAHN 363
>UniRef50_A1SNC5 Cluster: Exonuclease, RNase T and DNA polymerase
III; n=1; Nocardioides sp. JS614|Rep: Exonuclease, RNase
T and DNA polymerase III - Nocardioides sp. (strain
BAA-499 / JS614)
Length = 405
Score = 34.3 bits (75), Expect = 3.1
Identities = 39/132 (29%), Positives = 64/132 (48%), Gaps = 2/132 (1%)
Frame = +2
Query: 122 ITTYVFFDIETTGLPFQXXNKTKXTELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIH 301
+T Y D+ETTGL Q + + E+ + VS D I+ ++ + ++NP++ +
Sbjct: 1 MTGYTIIDLETTGLFPQKHD--RIVEIGLIEVS-DSGAIE------REWATLVNPQRDVG 51
Query: 302 PDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDA 481
P + G+T + +APTF++ A ++ L LVAHN FD + L E A
Sbjct: 52 P--THIHGITARDVLDAPTFQEVAPYLIGSL----AGRTLVAHNAR-FDTQFLDYEFERA 104
Query: 482 --GILLPSDLLC 511
G P+ LC
Sbjct: 105 SVGTRPPTPSLC 116
>UniRef50_Q5SK39 Cluster: DNA polymerase III epsilon chain-like
protein; n=2; Thermus thermophilus|Rep: DNA polymerase
III epsilon chain-like protein - Thermus thermophilus
(strain HB8 / ATCC 27634 / DSM 579)
Length = 624
Score = 33.9 bits (74), Expect = 4.1
Identities = 26/78 (33%), Positives = 38/78 (48%)
Frame = +2
Query: 275 VLNPEKKIHPDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYK 454
++NP + I P + GLT E L++ P + A +F+ + LVAHNG +FD
Sbjct: 479 LVNPGRPISPAATAVHGLTAEMLRDKPPLEAVLPAFRAFVQD----TVLVAHNG-AFDLA 533
Query: 455 ILLAECNDAGILLPSDLL 508
L D LL + LL
Sbjct: 534 FLRRAGLDQPPLLDTLLL 551
>UniRef50_Q41GU3 Cluster: DNA polymerase III, epsilon subunit:DnaQ
exonuclease/DinG helicase; n=1; Exiguobacterium
sibiricum 255-15|Rep: DNA polymerase III, epsilon
subunit:DnaQ exonuclease/DinG helicase - Exiguobacterium
sibiricum 255-15
Length = 937
Score = 33.9 bits (74), Expect = 4.1
Identities = 30/99 (30%), Positives = 47/99 (47%)
Frame = +2
Query: 260 KKLSFVLNPEKKIHPDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGN 439
++LS + P+K I P + LTG+T+E + A +F A ++ L+ VAHN
Sbjct: 38 ERLSAFVRPQKPIPPFISQLTGITDEDVAQAESFATIAPRVLQLLD----GGVFVAHN-V 92
Query: 440 SFDYKILLAECNDAGILLPSDLLCIDSLIGFRKILKTTQ 556
FD L + G LP ID++ R +L T +
Sbjct: 93 QFDLTFLNEALEEEG-YLPYTGPVIDTVELARILLPTAE 130
>UniRef50_Q3VXD4 Cluster: Exonuclease; n=1; Frankia sp. EAN1pec|Rep:
Exonuclease - Frankia sp. EAN1pec
Length = 389
Score = 33.9 bits (74), Expect = 4.1
Identities = 22/65 (33%), Positives = 32/65 (49%)
Frame = +2
Query: 302 PDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDA 481
P V + GLT + L +PTF A+ + L LVAHN +FD+++L E
Sbjct: 122 PGPVHIHGLTRQRLAGSPTFAAVADEVAGLL----AGRVLVAHNA-AFDWRMLAGEAMRI 176
Query: 482 GILLP 496
G +P
Sbjct: 177 GTTIP 181
>UniRef50_Q1FF73 Cluster: DNA polymerase III, epsilon subunit:DNA
polymerase III, alpha subunit, Gram-positive type; n=5;
Clostridiales|Rep: DNA polymerase III, epsilon
subunit:DNA polymerase III, alpha subunit, Gram-positive
type - Clostridium phytofermentans ISDg
Length = 1527
Score = 33.9 bits (74), Expect = 4.1
Identities = 40/139 (28%), Positives = 62/139 (44%)
Frame = +2
Query: 128 TYVFFDIETTGLPFQXXNKTKXTELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPD 307
T V FDIETTG K K E+ + IQ G + + S +NPE I
Sbjct: 496 TCVVFDIETTGF---SSVKDKIIEI-------GAVKIQHG-TIVDRFSTFINPEVPIPYH 544
Query: 308 VVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAGI 487
+ LT +T+E + + T ++ +SF + LVAHN SFD + + I
Sbjct: 545 IQKLTSITDEMVIGSRTIEEILPEFLSFC----EGCYLVAHNA-SFDIGFITKKAEFLNI 599
Query: 488 LLPSDLLCIDSLIGFRKIL 544
P + +D+ +G ++L
Sbjct: 600 --PLTVTSVDT-VGLARVL 615
>UniRef50_A7A5A0 Cluster: Putative uncharacterized protein; n=1;
Bifidobacterium adolescentis L2-32|Rep: Putative
uncharacterized protein - Bifidobacterium adolescentis
L2-32
Length = 261
Score = 33.9 bits (74), Expect = 4.1
Identities = 32/122 (26%), Positives = 50/122 (40%)
Frame = +2
Query: 131 YVFFDIETTGLPFQXXNKTKXTELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDV 310
YV DIETTGL + + L R I+ G + S ++NP+ I V
Sbjct: 99 YVAVDIETTGLG-------RDARIIELGAVR----IRHGRK-VASYSQLVNPQIPIPAKV 146
Query: 311 VVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAGIL 490
+TG+T+ ++K PT + +F + HN FD ++ E G
Sbjct: 147 TQITGITDRNVKGKPTIDKALPKFYAFCGR----DTWIGHNIRRFDIPVIAREAQRVGAG 202
Query: 491 LP 496
+P
Sbjct: 203 MP 204
>UniRef50_A6NSI0 Cluster: Putative uncharacterized protein; n=1;
Bacteroides capillosus ATCC 29799|Rep: Putative
uncharacterized protein - Bacteroides capillosus ATCC
29799
Length = 191
Score = 33.9 bits (74), Expect = 4.1
Identities = 32/118 (27%), Positives = 54/118 (45%)
Frame = +2
Query: 275 VLNPEKKIHPDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYK 454
++NPE++ + LTG+T E + + PTF + I L L+AHN FD
Sbjct: 40 LVNPEQRFDRFNIALTGITPEMVADKPTFPELWREI----GPLMDSGLLIAHNA-PFDMS 94
Query: 455 ILLAECNDAGILLPSDLLCIDSLIGFRKILKTTQKSLPLKMNTSKDDSASELLWPELD 628
+L D GI C + + + +++ LP ++ K ++ S+ L ELD
Sbjct: 95 VLAKCLRDYGI-------CWHPTVRYACTCQMSRRLLP-QLPNHKLNTLSDYLGLELD 144
>UniRef50_A5TTA5 Cluster: DNA-directed DNA polymerase III alpha
subunit; n=4; Fusobacterium nucleatum|Rep: DNA-directed
DNA polymerase III alpha subunit - Fusobacterium
nucleatum subsp. polymorphum ATCC 10953
Length = 1454
Score = 33.9 bits (74), Expect = 4.1
Identities = 27/101 (26%), Positives = 48/101 (47%)
Frame = +2
Query: 131 YVFFDIETTGLPFQXXNKTKXTELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDV 310
+V FDIETTGL + E+ + + I++G + + S ++NP + I +
Sbjct: 427 FVVFDIETTGL------NSHTNEIIEIGAVK----IKAGRI-VDRYSQLINPGRPIPYHI 475
Query: 311 VVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHN 433
+T +T+E + N P + + F+ + LVAHN
Sbjct: 476 TEITSITDEQVANEPKIDEVIGKFIDFVGD----AVLVAHN 512
>UniRef50_Q8IK94 Cluster: Putative uncharacterized protein; n=1;
Plasmodium falciparum 3D7|Rep: Putative uncharacterized
protein - Plasmodium falciparum (isolate 3D7)
Length = 2943
Score = 33.9 bits (74), Expect = 4.1
Identities = 19/60 (31%), Positives = 30/60 (50%)
Frame = +3
Query: 9 KMFLKNQHVKVSFSSNMQISFHQTAVASRKSSSIKWFXLQLTXFSTSKQQVCRFKXXIKL 188
K FLKN+ +K++F +NM I F T + S K IK + F + ++ K K+
Sbjct: 2672 KTFLKNKKLKINFMNNMNIGFF-TYICSTKFFDIKNIIIDDETFDHTNTKIYHIKCKSKI 2730
>UniRef50_Q7VQB5 Cluster: DNA polymerase III epsilon subunit; n=5;
Gammaproteobacteria|Rep: DNA polymerase III epsilon
subunit - Blochmannia floridanus
Length = 258
Score = 33.5 bits (73), Expect = 5.5
Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 3/99 (3%)
Frame = +2
Query: 278 LNPEKKIHPDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKI 457
LNP + + + + G++++ L + P F AN + F+ + LV HN SFD
Sbjct: 52 LNPNRSVDSEAFAIHGISDQFLVDQPCFLDIANDFLQFI----RGSTLVIHNA-SFDLGF 106
Query: 458 LLAECNDAGI---LLPSDLLCIDSLIGFRKILKTTQKSL 565
L E ++ + + S IDSL RKI + SL
Sbjct: 107 LNFELHNIYLNSRTVESYCTVIDSLKLARKIFPGQRNSL 145
>UniRef50_A4J5B5 Cluster: DNA polymerase III, epsilon subunit; n=1;
Desulfotomaculum reducens MI-1|Rep: DNA polymerase III,
epsilon subunit - Desulfotomaculum reducens MI-1
Length = 930
Score = 33.5 bits (73), Expect = 5.5
Identities = 21/68 (30%), Positives = 35/68 (51%)
Frame = +2
Query: 257 IKKLSFVLNPEKKIHPDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNG 436
I S ++ P+ + + LTG+ + L++AP ++ I+ F+ +LP LV HN
Sbjct: 35 IDSFSTLIRPKGILPVKIKRLTGIKDHELQDAPKLQEVLPVILQFIADLP----LVGHN- 89
Query: 437 NSFDYKIL 460
FDY L
Sbjct: 90 VKFDYDFL 97
>UniRef50_A0K225 Cluster: DNA polymerase III, epsilon subunit; n=3;
Bacteria|Rep: DNA polymerase III, epsilon subunit -
Arthrobacter sp. (strain FB24)
Length = 406
Score = 33.5 bits (73), Expect = 5.5
Identities = 28/98 (28%), Positives = 51/98 (52%), Gaps = 1/98 (1%)
Frame = +2
Query: 275 VLNPEKKIHPDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYK 454
++NP++ + P + G+ + +AP F A+ ++ EL LVAHN + FDY+
Sbjct: 43 LVNPQRDLGPQHI--HGIRAADILHAPVFGDIAHDVM----ELLAGRVLVAHNVH-FDYR 95
Query: 455 ILLAECNDAGILLPSDLL-CIDSLIGFRKILKTTQKSL 565
+ E AG+ LP ++ C+ ++ R+ L +SL
Sbjct: 96 FVSHELGRAGLELPFEVHDCLCTMKLARRYLPGAGRSL 133
>UniRef50_Q6LYU6 Cluster: Exonuclease; n=4; Methanococcus|Rep:
Exonuclease - Methanococcus maripaludis
Length = 191
Score = 33.5 bits (73), Expect = 5.5
Identities = 35/128 (27%), Positives = 56/128 (43%), Gaps = 1/128 (0%)
Frame = +2
Query: 131 YVFFDIETTGLPFQXXNKTKXTELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDV 310
YVF D ETTGL + + +L +L V+ +DL+++ + + K+H
Sbjct: 2 YVFLDTETTGL-----HPGQIAQLSYL-VTDEDLNLKKVFNQYYSVDHMSRSAAKVHG-- 53
Query: 311 VVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAG-I 487
LT + L N TF+ + + L + ++ HN SFD + L AE G
Sbjct: 54 --LTVEILDELSNGMTFEDTVDEVRDDLED----SVIIGHN-ISFDIRFLKAEFERLGPE 106
Query: 488 LLPSDLLC 511
+P D C
Sbjct: 107 YVPKDKFC 114
>UniRef50_Q6A9T9 Cluster: DNA polymerase III epsilon subunit; n=1;
Propionibacterium acnes|Rep: DNA polymerase III epsilon
subunit - Propionibacterium acnes
Length = 633
Score = 33.1 bits (72), Expect = 7.2
Identities = 21/59 (35%), Positives = 31/59 (52%)
Frame = +2
Query: 284 PEKKIHPDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKIL 460
P I V VLTG+T+ +++AP+ NA++ +E + LVAHN FD L
Sbjct: 107 PTGSIPASVQVLTGITDVMVRSAPSL----NAVLPSWSEFSRSTALVAHNAR-FDIGFL 160
>UniRef50_Q2GJZ1 Cluster: DNA polymerase III, epsilon subunit; n=7;
Anaplasmataceae|Rep: DNA polymerase III, epsilon subunit
- Anaplasma phagocytophilum (strain HZ)
Length = 244
Score = 33.1 bits (72), Expect = 7.2
Identities = 21/64 (32%), Positives = 32/64 (50%)
Frame = +2
Query: 278 LNPEKKIHPDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKI 457
++PE+ I + G+T ESL P F + A+ ++ FL + LV HN FD +
Sbjct: 45 IDPERDISVAATRVHGITRESLIGMPKFAEVADELLDFLQD----SALVIHNAR-FDMRF 99
Query: 458 LLAE 469
L E
Sbjct: 100 LEVE 103
>UniRef50_Q8XJR3 Cluster: DNA polymerase III polC-type; n=9;
Clostridiales|Rep: DNA polymerase III polC-type -
Clostridium perfringens
Length = 1449
Score = 33.1 bits (72), Expect = 7.2
Identities = 36/126 (28%), Positives = 53/126 (42%)
Frame = +2
Query: 131 YVFFDIETTGLPFQXXNKTKXTELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDV 310
YV FDIETTG F N K E+ AV D +I + S ++P+ I +
Sbjct: 435 YVVFDIETTG--FSSKN-DKIIEIG--AVKLKDGEI------VDSFSTFVDPKVNIPYKI 483
Query: 311 VVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAGIL 490
LT +T + PT + + F+ LVAHN +FD + D G
Sbjct: 484 TELTSITQNMVNGQPTIDEVLPKFMEFVGN----SVLVAHNA-AFDVGFIKKNLMDMGKT 538
Query: 491 LPSDLL 508
L + ++
Sbjct: 539 LKNPVM 544
>UniRef50_Q97RK4 Cluster: DNA polymerase III, epsilon
subunit/ATP-dependent helicase DinG; n=11; Streptococcus
pneumoniae|Rep: DNA polymerase III, epsilon
subunit/ATP-dependent helicase DinG - Streptococcus
pneumoniae
Length = 816
Score = 32.7 bits (71), Expect = 9.5
Identities = 22/61 (36%), Positives = 31/61 (50%)
Frame = +2
Query: 278 LNPEKKIHPDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKI 457
+NP + + + LTGLT++ L AP F Q A I +L + VAHN FD +
Sbjct: 45 VNPHEPLDAHIKELTGLTDQRLAQAPDFSQVARKIF----DLVEDGIFVAHN-VQFDANL 99
Query: 458 L 460
L
Sbjct: 100 L 100
>UniRef50_Q2RJC1 Cluster: DNA polymerase III, epsilon subunit; n=1;
Moorella thermoacetica ATCC 39073|Rep: DNA polymerase
III, epsilon subunit - Moorella thermoacetica (strain
ATCC 39073)
Length = 921
Score = 32.7 bits (71), Expect = 9.5
Identities = 28/111 (25%), Positives = 53/111 (47%)
Frame = +2
Query: 128 TYVFFDIETTGLPFQXXNKTKXTELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPD 307
TYV D+ETTGL + + E+ + + ++ ++ ++NP + I P
Sbjct: 5 TYVVLDVETTGLD---PARDRIIEIAAVRLEGGNIT--------RQFQTLVNPGRPIPPA 53
Query: 308 VVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKIL 460
+ LTG+++ ++ AP + ++ L +L + V HNG +FD L
Sbjct: 54 IERLTGISDAMVREAPPLPE----VLPGLLDLFRDAIPVGHNG-TFDLAFL 99
>UniRef50_A4VTT3 Cluster: Rad3-related DNA helicase; n=6;
Streptococcus|Rep: Rad3-related DNA helicase -
Streptococcus suis (strain 05ZYH33)
Length = 837
Score = 32.7 bits (71), Expect = 9.5
Identities = 20/61 (32%), Positives = 31/61 (50%)
Frame = +2
Query: 278 LNPEKKIHPDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKI 457
+NP + + + LTG+T++ L AP F Q A+ I + + VAHN FD +
Sbjct: 65 INPYELLDDHIKNLTGITDQQLSQAPDFGQVASTIYDMIGD----AIFVAHN-VKFDANL 119
Query: 458 L 460
L
Sbjct: 120 L 120
>UniRef50_A0HHK4 Cluster: DNA polymerase III, epsilon subunit; n=2;
Comamonadaceae|Rep: DNA polymerase III, epsilon subunit
- Comamonas testosteroni KF-1
Length = 243
Score = 32.7 bits (71), Expect = 9.5
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +2
Query: 266 LSFVLNPEKKIHPDVVVLTGLTNESLKNAPTFKQRANAIVSFL 394
L N + HPD + + G+T E LK+ P F+++ + I +L
Sbjct: 40 LHLYFNAGRDSHPDALRVHGITTEFLKDKPRFEEKIDEIWEYL 82
>UniRef50_Q556S6 Cluster: Putative uncharacterized protein; n=2;
Dictyostelium discoideum|Rep: Putative uncharacterized
protein - Dictyostelium discoideum AX4
Length = 176
Score = 32.7 bits (71), Expect = 9.5
Identities = 26/94 (27%), Positives = 48/94 (51%), Gaps = 5/94 (5%)
Frame = +2
Query: 461 LAECNDAGILLPSDLLCIDSLIGF--RKILKTTQKSLPLKMNTSKDDSASELLWPELDVS 634
+ + NDA + S ++ I S + ++ +K K L K+ KDDS + + +D+
Sbjct: 63 MRDFNDAAVK-NSTIIKISSKLQMNPKQFMKAMPKELSQKLVKLKDDSPESISFTFVDLD 121
Query: 635 TENWEEIDN-LCASF--SKDTCIDDEKSKKENDL 727
+NWE ++ LC F S + + EK K++ D+
Sbjct: 122 -DNWEPDESLLCKDFIISNLSKLQKEKFKEQEDI 154
>UniRef50_Q22S54 Cluster: Exonuclease family protein; n=1;
Tetrahymena thermophila SB210|Rep: Exonuclease family
protein - Tetrahymena thermophila SB210
Length = 599
Score = 32.7 bits (71), Expect = 9.5
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +2
Query: 266 LSFVLNPEKKIHPDVVVLTGLTNESLKNAPTFKQRANAIVSFLNE 400
L + P+KKI + ++G+T +KNAPT+ + N I L +
Sbjct: 468 LDTYVRPQKKIKNYLTKVSGITFTHIKNAPTYPEVKNKIFEILKD 512
>UniRef50_A5E6E8 Cluster: Putative uncharacterized protein; n=1;
Lodderomyces elongisporus NRRL YB-4239|Rep: Putative
uncharacterized protein - Lodderomyces elongisporus
(Yeast) (Saccharomyces elongisporus)
Length = 653
Score = 32.7 bits (71), Expect = 9.5
Identities = 15/30 (50%), Positives = 21/30 (70%)
Frame = +3
Query: 597 VLVNCYGQNSTCLQKIGKKLIICVPHLAKT 686
VL NC G Q++GK+L+IC+ H+AKT
Sbjct: 522 VLTNCLGG-----QQVGKQLLICLDHIAKT 546
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 621,950,285
Number of Sequences: 1657284
Number of extensions: 11283628
Number of successful extensions: 29191
Number of sequences better than 10.0: 191
Number of HSP's better than 10.0 without gapping: 28174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29112
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 59265488880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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