Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_F18
         (732 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb...    29   0.90 
SPBC216.01c ||SPBC713.13c|DNA damage response protein |Schizosac...    27   2.8  
SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomy...    26   6.4  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    26   6.4  
SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomy...    26   6.4  
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy...    26   6.4  

>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1389

 Score = 28.7 bits (61), Expect = 0.90
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +3

Query: 99   SSSIKWFXLQLTXFSTSKQQVCRFKXXIKLXSPNYVFWQCLEMI 230
            SS  +++    T  +T +  +   K  IKL + NYVFW  L ++
Sbjct: 896  SSYYRFYECDTTKDATLQVAINCIKQAIKLEAKNYVFWNMLGVL 939


>SPBC216.01c ||SPBC713.13c|DNA damage response protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 836

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +2

Query: 335 ESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDY 451
           ESL N  TF +  N I    ++   P  +  H  NS+++
Sbjct: 671 ESLNNLSTFSELLNIIDGLSSDSRSPKTVGTHESNSYEF 709


>SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 773

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 353 AHSLVTHSLGQSKLQHQDEFSFLGSVRKT 267
           AHSLV H++G  KL   +   F+ ++  T
Sbjct: 30  AHSLVAHNIGHIKLDPNEGLFFVDNLVNT 58


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
           Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = +2

Query: 428 HNGNSFDYKILLAECNDAGILLPSDLLC--IDSLIGFRKILKTT 553
           H+G    ++  + E +  G  L  DL    +  LIGFRK L +T
Sbjct: 149 HSGTIAQWRDTIEEIHRRGFYLVLDLTISTLGDLIGFRKYLNST 192


>SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 596

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 440 SFDYKILLAECNDAGILLPSDLLCIDSLIG 529
           SFD  +L+      GIL+ +DLL I S  G
Sbjct: 475 SFDRTLLILPGGSTGILIINDLLVIRSFAG 504


>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 478

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
 Frame = +2

Query: 554 QKSLPLKMNTSKDDSASELL---WPELDVSTE-NWEEIDNLCASFSKDT 688
           Q  L +K +T KDD+  ELL     E++V+ E N E++D L     KDT
Sbjct: 228 QAKLGIKASTQKDDNDFELLNNTTGEIEVTKELNEEQLDAL-RKKDKDT 275


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,752,505
Number of Sequences: 5004
Number of extensions: 53318
Number of successful extensions: 164
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)