Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_F18
         (732 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1204 - 31715270-31715466,31716121-31716326,31716665-31717044     46   2e-05
03_02_0708 + 10577931-10579511,10579613-10579706,10580694-105808...    43   3e-04
06_02_0044 - 10913591-10913720,10914268-10914572,10915191-109153...    29   5.0  
04_03_0622 + 18106448-18106508,18107431-18108281                       28   6.6  

>04_04_1204 - 31715270-31715466,31716121-31716326,31716665-31717044
          Length = 260

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 40/147 (27%), Positives = 69/147 (46%), Gaps = 3/147 (2%)
 Frame = +2

Query: 128 TYVFFDIETTGLPFQXXNKTKXTELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPD 307
           T + FD+ETTG  F   ++     LC L+  ++    ++ + P + +   +    KI  D
Sbjct: 61  TILVFDLETTGY-FHKDHRIVEFALCDLSGGKNST-FETLVNPERTVPDYVEHLIKIGTD 118

Query: 308 VVVLTGLTNESLKNAPTFKQRANAIVSFLN--ELP-KPICLVAHNGNSFDYKILLAECND 478
           +V   G+        P F      +++F+   + P KP+  VAHN   FD + L  E + 
Sbjct: 119 LVCRPGI--------PRFSDVIPLLLAFVRSRQAPGKPVLWVAHNAKQFDARFLAQEFDR 170

Query: 479 AGILLPSDLLCIDSLIGFRKILKTTQK 559
               LP+D L  D+L+  +K++K   K
Sbjct: 171 CSAPLPADWLFFDTLLLAKKMVKAEGK 197


>03_02_0708 +
           10577931-10579511,10579613-10579706,10580694-10580856,
           10581286-10581491,10581854-10582062
          Length = 750

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 27/100 (27%), Positives = 50/100 (50%), Gaps = 3/100 (3%)
 Frame = +2

Query: 275 VLNPEKKIHPDVVVLTGLTNESLKNAPTFKQRANAIVSFL---NELPKPICLVAHNGNSF 445
           ++NPE++I    V     +     + P F++    ++ ++       KP+  VAHNG SF
Sbjct: 586 LINPEREIKNAYVHGISSSMVCKPDIPRFREFIPLLLQYVLSRQMADKPVLWVAHNGRSF 645

Query: 446 DYKILLAECNDAGILLPSDLLCIDSLIGFRKILKTTQKSL 565
           D   L+ E   + I +P D L +D+L   R+++ +  + L
Sbjct: 646 DVPFLMYEFQRSKIEMPGDWLFVDTLPIARQLIGSDGEKL 685


>06_02_0044 -
           10913591-10913720,10914268-10914572,10915191-10915391,
           10916620-10917042
          Length = 352

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 36/152 (23%), Positives = 69/152 (45%), Gaps = 7/152 (4%)
 Frame = +2

Query: 221 RDDLDIQSGLPPIKKLSFV---LNPEKKIHPDVVVLTGLTNESLKNAPTFKQRANAIVSF 391
           R  ++  SG P   +LS +   ++    + P+     G++  S+ ++    Q   A  S 
Sbjct: 31  RQTINCYSGCPSSSELSKIWTFVSDIPNVAPEPNCEQGISMMSISDSGVSNQDNAAGDSS 90

Query: 392 LNELPKPICLVAHNGNSFDYKILLAECNDAGI-LLPSDLLCIDSLIGFRKILKTTQKSLP 568
           L ++     L++  G +   K L+   ++AG+ LLP   L  D + G    + +T   +P
Sbjct: 91  LLDIASAT-LMSDLGTAGKPKSLIGSSSEAGVNLLP---LATDQMAGS---VDSTSAKVP 143

Query: 569 LKMNT---SKDDSASELLWPELDVSTENWEEI 655
              +    SKD    +    ++D+S EN+EE+
Sbjct: 144 YTADQDMFSKDSIYEDFCVDDVDLSFENYEEL 175


>04_03_0622 + 18106448-18106508,18107431-18108281
          Length = 303

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +2

Query: 215 VSRDDLDIQSGLPPIKKLSFVLNPEK-KIHPDVVVLTGLTNESLK 346
           +  D + +      +K +S  L PE   +  D++  TG T+ESLK
Sbjct: 247 IDNDMIALSQTCKNLKSISLWLKPEHYNVGDDIIFRTGFTDESLK 291


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,304,240
Number of Sequences: 37544
Number of extensions: 298763
Number of successful extensions: 784
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)