Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_F_F18
(732 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_1985| Best HMM Match : No HMM Matches (HMM E-Value=.) 88 8e-18
SB_50886| Best HMM Match : Nop10p (HMM E-Value=5.4) 40 0.002
SB_45523| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_50683| Best HMM Match : Nop10p (HMM E-Value=2.6) 40 0.002
SB_56545| Best HMM Match : Exonuc_X-T (HMM E-Value=1.2e-09) 38 0.011
SB_49723| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.011
SB_21765| Best HMM Match : Exonuc_X-T (HMM E-Value=1.9e-09) 36 0.026
SB_15216| Best HMM Match : Exonuc_X-T (HMM E-Value=1.9e-09) 36 0.026
SB_4014| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_59149| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
>SB_1985| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 343
Score = 87.8 bits (208), Expect = 8e-18
Identities = 52/143 (36%), Positives = 77/143 (53%), Gaps = 5/143 (3%)
Frame = +2
Query: 128 TYVFFDIETTGLPFQXXNKTKXTELCFLAVSRDDL--DIQSGLPP--IKKLSFVLNPEKK 295
T++F D+ETTGL + TE+C +AV +D L ++ P I KLS + P +
Sbjct: 81 TFIFLDLETTGL----RRPIEITEICLIAVQKDHLLRAAETKTEPRLIDKLSICVKPVQN 136
Query: 296 IHPDVVVLTGLTNESLKNAPTFKQR-ANAIVSFLNELPKPICLVAHNGNSFDYKILLAEC 472
I +TG+ L F ++ A I +FL P P CLVAH+G+ FD+ IL +E
Sbjct: 137 IECGASSITGINKMDLAEKREFDRKLAKVIKTFLRRQPSPSCLVAHSGDRFDFDILASEF 196
Query: 473 NDAGILLPSDLLCIDSLIGFRKI 541
+AG+ PS++ DS FRK+
Sbjct: 197 VNAGVKFPSEIQAADSWKAFRKL 219
>SB_50886| Best HMM Match : Nop10p (HMM E-Value=5.4)
Length = 201
Score = 40.3 bits (90), Expect = 0.002
Identities = 25/76 (32%), Positives = 46/76 (60%), Gaps = 4/76 (5%)
Frame = +2
Query: 395 NELPKPICLVAHNGNSFDYKIL---LAECNDAGILLPSDLLCIDSLIGFRKILKTTQKSL 565
++ PK +CLVAHNG+SFD+++L L N + + L+ +DS+ K+++ ++K
Sbjct: 4 SQSPKRLCLVAHNGDSFDFRLLINCLKRHNLMNEFISTGLVLLDSV----KVIRASKKQE 59
Query: 566 PLKMNTS-KDDSASEL 610
+++S K +S S L
Sbjct: 60 NSPLDSSFKKESLSAL 75
>SB_45523| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 187
Score = 40.3 bits (90), Expect = 0.002
Identities = 25/76 (32%), Positives = 46/76 (60%), Gaps = 4/76 (5%)
Frame = +2
Query: 395 NELPKPICLVAHNGNSFDYKIL---LAECNDAGILLPSDLLCIDSLIGFRKILKTTQKSL 565
++ PK +CLVAHNG+SFD+++L L N + + L+ +DS+ K+++ ++K
Sbjct: 4 SQSPKRLCLVAHNGDSFDFRLLINCLKRHNLMNEFISTGLVLLDSV----KVIRASKKQE 59
Query: 566 PLKMNTS-KDDSASEL 610
+++S K +S S L
Sbjct: 60 NSPLDSSFKKESLSAL 75
>SB_50683| Best HMM Match : Nop10p (HMM E-Value=2.6)
Length = 201
Score = 39.9 bits (89), Expect = 0.002
Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Frame = +2
Query: 395 NELPKPICLVAHNGNSFDYKIL---LAECNDAGILLPSDLLCIDSLIGFRKILKTTQKSL 565
++ PK +CLVAHNG+SFD+++L L N + + L+ +DS+ R K Q++
Sbjct: 4 SQSPKRLCLVAHNGDSFDFRLLINCLKRHNLMNEFISTGLVLLDSVKVIRASKK--QENS 61
Query: 566 PLKMNTSKD 592
PL + K+
Sbjct: 62 PLDSSFKKE 70
>SB_56545| Best HMM Match : Exonuc_X-T (HMM E-Value=1.2e-09)
Length = 416
Score = 37.5 bits (83), Expect = 0.011
Identities = 44/171 (25%), Positives = 77/171 (45%), Gaps = 10/171 (5%)
Frame = +2
Query: 128 TYVFFDIETTGLPFQXXNKTKXTELCFLAVSRDDLDIQSGLPPIKKL-SFVLNP----EK 292
T+V FD ETTGL + +L + + D L + P + + S N E
Sbjct: 110 TFVMFDTETTGLD---TSNDVIIQLACASENGDPLHSRYMFPGGRSIGSEATNAHGISEA 166
Query: 293 KIHPDVVVLTGLTNESLKNAPTFKQRANAIVSFL----NELPKPICLVAHNGNSFDYKIL 460
I V+L L + + K ++FL ++ PK +CLVAHNG+ FD+ +L
Sbjct: 167 FIDGSRVLLKD--GRPLADVASQKDGLRKFLAFLKMHQSQSPKRLCLVAHNGDRFDFPLL 224
Query: 461 LAECNDAGILLPSDLLCIDSLIGFRKILKTTQKSLPLKMNTS-KDDSASEL 610
+ C L+ + L+ K+++ ++K +++ K +S S+L
Sbjct: 225 I-NCLKRHNLMNEFISTGSVLLDSLKVIRASKKQENSPLDSPFKKESLSDL 274
>SB_49723| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 319
Score = 37.5 bits (83), Expect = 0.011
Identities = 44/171 (25%), Positives = 77/171 (45%), Gaps = 10/171 (5%)
Frame = +2
Query: 128 TYVFFDIETTGLPFQXXNKTKXTELCFLAVSRDDLDIQSGLPPIKKL-SFVLNP----EK 292
T+V FD ETTGL + +L + + D L + P + + S N E
Sbjct: 18 TFVMFDTETTGLD---TSNDVIIQLACASENGDPLHSRYMFPGGRSIGSEATNAHGISEA 74
Query: 293 KIHPDVVVLTGLTNESLKNAPTFKQRANAIVSFL----NELPKPICLVAHNGNSFDYKIL 460
I V+L L + + K ++FL ++ PK +CLVAHNG+ FD+ +L
Sbjct: 75 FIDGSRVLLKD--GRPLADVASQKDGLRKFLAFLKMHQSQSPKRLCLVAHNGDRFDFPLL 132
Query: 461 LAECNDAGILLPSDLLCIDSLIGFRKILKTTQKSLPLKMNTS-KDDSASEL 610
+ C L+ + L+ K+++ ++K +++ K +S S+L
Sbjct: 133 I-NCLKRHNLMNEFISTGSVLLDSLKVIRASKKQENSPLDSPFKKESLSDL 182
>SB_21765| Best HMM Match : Exonuc_X-T (HMM E-Value=1.9e-09)
Length = 460
Score = 36.3 bits (80), Expect = 0.026
Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Frame = +2
Query: 395 NELPKPICLVAHNGNSFDYKILLAECNDAGILLPSDLLCIDSLIGFRKILKTTQKSLPLK 574
++ PK +CLVAH G+SFD+++L+ C L+ + L+ K+++ ++K
Sbjct: 247 SQSPKRLCLVAHYGDSFDFRLLI-NCLKRHNLMNEFISTGSVLLDSVKVVRASKKQEKSP 305
Query: 575 MNTS-KDDSASEL 610
++S K +S S L
Sbjct: 306 FDSSFKKESLSAL 318
>SB_15216| Best HMM Match : Exonuc_X-T (HMM E-Value=1.9e-09)
Length = 415
Score = 36.3 bits (80), Expect = 0.026
Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Frame = +2
Query: 395 NELPKPICLVAHNGNSFDYKILLAECNDAGILLPSDLLCIDSLIGFRKILKTTQKSLPLK 574
++ PK +CLVAH G+SFD+++L+ C L+ + L+ K+++ ++K
Sbjct: 202 SQSPKRLCLVAHYGDSFDFRLLI-NCLKRHNLMNEFISTGSVLLDSVKVVRASKKQEKSP 260
Query: 575 MNTS-KDDSASEL 610
++S K +S S L
Sbjct: 261 FDSSFKKESLSAL 273
>SB_4014| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 160
Score = 29.5 bits (63), Expect = 2.9
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 5/41 (12%)
Frame = +2
Query: 545 KTTQKSLPLKMNTSK--DDSAS---ELLWPELDVSTENWEE 652
K K+ P+K N S DD AS E +WP L+V +W E
Sbjct: 24 KQNLKATPMKQNYSNTDDDQASSFVEKVWPLLEVKMNSWIE 64
>SB_59149| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 642
Score = 28.7 bits (61), Expect = 5.1
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +3
Query: 603 VNCYGQNSTCLQKIGKKLIICVPHLAKTHV 692
V C +N TC+++ G+ + CV ++HV
Sbjct: 491 VTCVRRNGTCVRRNGRDHVTCVRRNGRSHV 520
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,910,167
Number of Sequences: 59808
Number of extensions: 371271
Number of successful extensions: 929
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 925
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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