Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_F_F17
(779 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56407| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.34
SB_42989| Best HMM Match : HdeA (HMM E-Value=9.6) 32 0.60
SB_43456| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.79
SB_40301| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.4
SB_664| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.4
SB_41314| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.4
SB_2798| Best HMM Match : DNA_pol_B_2 (HMM E-Value=7.9e-10) 29 3.2
SB_23613| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_8844| Best HMM Match : WD40 (HMM E-Value=2.5e-28) 29 5.6
SB_49185| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.6
SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048) 29 5.6
SB_56145| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.8
SB_36951| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.8
SB_8375| Best HMM Match : NUC153 (HMM E-Value=2.9) 28 9.8
>SB_56407| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2028
Score = 32.7 bits (71), Expect = 0.34
Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Frame = +3
Query: 513 GEKLGSLEYDDASVK---LGDVMCLKFIEFPCDRPCL 614
G+ LG+L YDD + L DV L E CD PCL
Sbjct: 19 GQDLGALAYDDTQTETLDLSDVEVLAIEETMCDPPCL 55
>SB_42989| Best HMM Match : HdeA (HMM E-Value=9.6)
Length = 235
Score = 31.9 bits (69), Expect = 0.60
Identities = 19/62 (30%), Positives = 33/62 (53%)
Frame = +3
Query: 132 PVYTIRNVDNVPVYSLAFSFLPGGLERLLAGSKNGYVYAYNLQTNRVQQKIQVGQAPILH 311
PVY + N+++VP + S PG L LL S + YN Q ++ ++ + V A ++
Sbjct: 31 PVYEVNNIESVPFPGIISS--PGDLFPLLPDSIR---FIYNAQISKCEEHLSVKLAHLMS 85
Query: 312 LI 317
L+
Sbjct: 86 LV 87
>SB_43456| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 359
Score = 31.5 bits (68), Expect = 0.79
Identities = 19/72 (26%), Positives = 38/72 (52%)
Frame = +3
Query: 198 GGLERLLAGSKNGYVYAYNLQTNRVQQKIQVGQAPILHLIHTDSHLITQEKGGKLKVFEL 377
G +RLL+GS + V Y+LQ +V + +PIL L +D ++++++ L ++
Sbjct: 242 GAYKRLLSGSIDRNVKVYDLQDYKVVHSMDY-PSPILSLAVSDDVVVSEKRKTYLNKYDK 300
Query: 378 TNSGYEEDAVIE 413
+E A ++
Sbjct: 301 LVKNFEYAAALD 312
>SB_40301| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2653
Score = 30.7 bits (66), Expect = 1.4
Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +3
Query: 342 QEKGGKLKVFELTNSGYEEDAVIEVDYPGFCRFEANTKLASL-YVPEKDYKINIYNFNGE 518
QE+GG+L + L +S ++DY RF TKLA+ Y+PE K+ I NF
Sbjct: 1793 QEQGGRLLI-RLGDS--------DIDYDKNFRFYMTTKLANPHYLPEVCIKVTIINFTVT 1843
Query: 519 KLG 527
K G
Sbjct: 1844 KSG 1846
>SB_664| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1046
Score = 30.7 bits (66), Expect = 1.4
Identities = 21/93 (22%), Positives = 43/93 (46%), Gaps = 2/93 (2%)
Frame = +3
Query: 192 LPGGLERLLAGSKNGYVYAYNLQTNRVQQKIQVGQAPILHLIHTDSHLITQE--KGGKLK 365
L GG+ +++G K GYVY + + Q + + HT H IT++ + ++
Sbjct: 273 LLGGMCVMVSGPKEGYVYDIYNKAMLLSQYKYTSDTIKVSVCHTLLHAITKQGLETYTVR 332
Query: 366 VFELTNSGYEEDAVIEVDYPGFCRFEANTKLAS 464
++ + G D V++ + + +K+AS
Sbjct: 333 MYAAASQGLRTDRVLQHNLSSMQNEKKESKIAS 365
>SB_41314| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1388
Score = 29.9 bits (64), Expect = 2.4
Identities = 17/57 (29%), Positives = 22/57 (38%)
Frame = +2
Query: 92 GLSLSKNGTASSGSCLHYPKCR*CASLFTGFQFFTRGLREVTSRFEKRLCLRIQPPD 262
GL+ KN T S C Y KC C G V ++ +C + PPD
Sbjct: 471 GLANKKNVTPRS-YCQMYHKCETCGKRIDMIAIQKEGTSHVCGEYKCTVCKEVVPPD 526
>SB_2798| Best HMM Match : DNA_pol_B_2 (HMM E-Value=7.9e-10)
Length = 1378
Score = 29.5 bits (63), Expect = 3.2
Identities = 17/57 (29%), Positives = 22/57 (38%)
Frame = +2
Query: 92 GLSLSKNGTASSGSCLHYPKCR*CASLFTGFQFFTRGLREVTSRFEKRLCLRIQPPD 262
GL KN T S C Y KC C G+ V ++ +C + PPD
Sbjct: 461 GLPNKKNVTPRS-YCQMYHKCEACGKRIDMVAIQKEGVSHVCGEYKCTVCKEVVPPD 516
>SB_23613| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 602
Score = 29.1 bits (62), Expect = 4.2
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +3
Query: 549 SVKLGDVMCLKFIEFPCDRPCLLXGYEAGWLLLWDLNT 662
+++LG + I++ + CL+ GY G +WDL T
Sbjct: 222 AIELGASTFVTVIKYIKEATCLVVGYNFGCFHIWDLET 259
>SB_8844| Best HMM Match : WD40 (HMM E-Value=2.5e-28)
Length = 539
Score = 28.7 bits (61), Expect = 5.6
Identities = 29/135 (21%), Positives = 62/135 (45%), Gaps = 2/135 (1%)
Frame = +3
Query: 288 VGQAPILHLIHT-DSHLITQEKGGKLKVFEL-TNSGYEEDAVIEVDYPGFCRFEANTKLA 461
VG +H + T +HLI+ ++G LKV+++ T Y E + C +T L
Sbjct: 92 VGHDKDVHCLLTFGAHLISVDEGSSLKVWDIKTTELYLEVGFDSKTFHITCLMHPSTYLN 151
Query: 462 SLYVPEKDYKINIYNFNGEKLGSLEYDDASVKLGDVMCLKFIEFPCDRPCLLXGYEAGWL 641
+ + K + I+N +YD+A+V + ++ + + P + G ++G +
Sbjct: 152 KILLCSKQGSMQIWNI------KTKYDNATVNV--ILFVSVGKAPA-IDVVAVGLQSGKI 202
Query: 642 LLWDLNTNKCIXKLQ 686
++ +L ++ + Q
Sbjct: 203 VIHNLKVDETVMTFQ 217
>SB_49185| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 371
Score = 28.7 bits (61), Expect = 5.6
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -2
Query: 598 HGNSMNFRHITSPSFTDASSYSKEPSFSPLKL 503
+G S++F TSP + D ++ +EPS +P L
Sbjct: 112 YGGSISFEDETSPRYYDNNNTYEEPSLTPAAL 143
>SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048)
Length = 1952
Score = 28.7 bits (61), Expect = 5.6
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -2
Query: 598 HGNSMNFRHITSPSFTDASSYSKEPSFSPLKL 503
+G S++F TSP + D ++ +EPS +P L
Sbjct: 1693 YGGSISFEDETSPRYYDNNNTYEEPSLTPAAL 1724
>SB_56145| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 64
Score = 27.9 bits (59), Expect = 9.8
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -3
Query: 141 CKQDPEEAVPFLDKLKPKLVSELE 70
CK + E+ PFL K++ +L SEL+
Sbjct: 26 CKTNAYESTPFLSKIRSQLSSELK 49
>SB_36951| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 103
Score = 27.9 bits (59), Expect = 9.8
Identities = 11/27 (40%), Positives = 20/27 (74%)
Frame = +3
Query: 327 SHLITQEKGGKLKVFELTNSGYEEDAV 407
+HLI QE+ L++ EL ++ Y++DA+
Sbjct: 12 AHLIKQEEKVNLELRELQHTAYDDDAI 38
>SB_8375| Best HMM Match : NUC153 (HMM E-Value=2.9)
Length = 433
Score = 27.9 bits (59), Expect = 9.8
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = -3
Query: 285 VSSAELYLSGGCMRKHNRFSNRLVTSLSPRVKN*KPVNKLAHYRH 151
++S +L GC N+F N L TS+ + K +NKL ++H
Sbjct: 89 MASINTHLDSGC----NKFGNELNTSIKSGIGVEKRINKLDVHKH 129
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,845,167
Number of Sequences: 59808
Number of extensions: 425995
Number of successful extensions: 862
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 862
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2131907602
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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