Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_F13
         (375 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20002| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.1  
SB_15868| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.5  
SB_59534| Best HMM Match : AA_permease (HMM E-Value=3.1e-05)           26   8.7  
SB_49243| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.7  

>SB_20002| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2484

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 9/71 (12%)
 Frame = +1

Query: 103  QHQVARPFKRSSSASSKTLNN-----FYFIT----GSRVKSIN*KHQIKSINLKVFCRSR 255
            QH++A P KR+SSAS  T  N      +F+T    GS++++ N   QI S    ++ R R
Sbjct: 2148 QHELAPPVKRASSASEVTSRNNDSFEDFFLTVPEKGSKLQASNISLQITS-TYPLYLR-R 2205

Query: 256  SS*TTKNVNLK 288
             + T  +++LK
Sbjct: 2206 GAVTPASMSLK 2216


>SB_15868| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1103

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +3

Query: 108 PGGPSVQALVVCIKQNVE*LLLHNRKQSK 194
           PG  S +ALV  I +N+  LL++  +Q+K
Sbjct: 351 PGSQSERALVAMIVENLRSLLINKEEQAK 379


>SB_59534| Best HMM Match : AA_permease (HMM E-Value=3.1e-05)
          Length = 889

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +1

Query: 10  DSPLFQCNFHLVIAGLWQAIH 72
           D P++ CNF+ ++  +  AIH
Sbjct: 547 DKPVYTCNFYAILCRIVAAIH 567


>SB_49243| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 289

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 56  CGKQFTLXCRIKFASSNTRWPVRSSARRLHQAK 154
           C KQ  + CR + A+    W ++  +R+L  AK
Sbjct: 50  CQKQEIVECRSRCANGEFIWKIQCFSRKLMDAK 82


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,635,802
Number of Sequences: 59808
Number of extensions: 116945
Number of successful extensions: 246
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 246
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 619783250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)