Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_F13
         (375 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    23   1.6  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    23   1.6  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    20   8.3  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    20   8.3  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    20   8.3  

>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 1.6
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +1

Query: 151 KTLNNFYFITGSRVKSIN*KHQIKSINLKVF 243
           K LN FY    S +KSI+   Q+K   L  F
Sbjct: 525 KKLNMFYNNFNSDIKSISNNEQVKVSALGFF 555


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 1.6
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +1

Query: 151 KTLNNFYFITGSRVKSIN*KHQIKSINLKVF 243
           K LN FY    S +KSI+   Q+K   L  F
Sbjct: 525 KKLNMFYNNFNSDIKSISNNEQVKVSALGFF 555


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 20.2 bits (40), Expect = 8.3
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -1

Query: 294 FYLKIYIFCCL*TSASAKNF*ID 226
           + ++IYI CC+    S  +F +D
Sbjct: 244 YLIQIYIPCCMLVIVSWVSFWLD 266


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 20.2 bits (40), Expect = 8.3
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -1

Query: 294 FYLKIYIFCCL*TSASAKNF*ID 226
           + ++IYI CC+    S  +F +D
Sbjct: 244 YLIQIYIPCCMLVIVSWVSFWLD 266


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 20.2 bits (40), Expect = 8.3
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = -1

Query: 297 LFYLKIYIFC 268
           L+ LK+Y+FC
Sbjct: 37  LYRLKLYLFC 46


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,608
Number of Sequences: 438
Number of extensions: 1100
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9052365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)