Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_F_F11
(723 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC005943-1|AAH05943.1| 221|Homo sapiens recombination activatin... 77 6e-14
AL691442-8|CAI15323.1| 221|Homo sapiens recombination activatin... 77 6e-14
AF126023-1|AAF17232.1| 221|Homo sapiens stromal cell protein pr... 77 6e-14
CR457148-1|CAG33429.1| 221|Homo sapiens LOC55974 protein. 75 3e-13
AL691442-9|CAI15324.1| 166|Homo sapiens recombination activatin... 53 1e-06
AL691442-6|CAI15321.1| 156|Homo sapiens recombination activatin... 53 1e-06
AF126024-1|AAF17233.1| 179|Homo sapiens stromal cell protein is... 53 1e-06
BC009621-1|AAH09621.1| 167|Homo sapiens RAG1AP1 protein protein. 42 0.002
AL691442-7|CAI15322.1| 167|Homo sapiens recombination activatin... 42 0.002
>BC005943-1|AAH05943.1| 221|Homo sapiens recombination activating
gene 1 activating protein 1 protein.
Length = 221
Score = 77.0 bits (181), Expect = 6e-14
Identities = 45/154 (29%), Positives = 76/154 (49%), Gaps = 4/154 (2%)
Frame = +2
Query: 170 LQYGYILRDDTMIQVNMFGLALNIIYVMIYFNYSQQKVKVWAQIGLAGAVSAALIGYAQ- 346
L YG + D +I VN G AL +Y++ Y +Y +K V Q A + L+GY
Sbjct: 58 LSYGALKGDGILIVVNTVGAALQTLYILAYLHYCPRKRVVLLQT--ATLLGVLLLGYGYF 115
Query: 347 ---TEDPKLVETRFGTIITAFMFYLIASPLFGLKEIIQNKSTEGMPFPIILSGTVVTFMW 517
+P+ + G + F + SPL L ++IQ KST+ + +P+ ++ + + W
Sbjct: 116 WLLVPNPEARLQQLGLFCSVFTISMYLSPLADLAKVIQTKSTQCLSYPLTIATLLTSASW 175
Query: 518 LLYGIILRNKFLVVQNVVALLLCGSQLSLFVIYP 619
LYG LR+ +++V N ++ + LF YP
Sbjct: 176 CLYGFRLRDPYIMVSNFPGIVTSFIRFWLFWKYP 209
>AL691442-8|CAI15323.1| 221|Homo sapiens recombination activating
gene 1 activating protein 1 protein.
Length = 221
Score = 77.0 bits (181), Expect = 6e-14
Identities = 45/154 (29%), Positives = 76/154 (49%), Gaps = 4/154 (2%)
Frame = +2
Query: 170 LQYGYILRDDTMIQVNMFGLALNIIYVMIYFNYSQQKVKVWAQIGLAGAVSAALIGYAQ- 346
L YG + D +I VN G AL +Y++ Y +Y +K V Q A + L+GY
Sbjct: 58 LSYGALKGDGILIVVNTVGAALQTLYILAYLHYCPRKRVVLLQT--ATLLGVLLLGYGYF 115
Query: 347 ---TEDPKLVETRFGTIITAFMFYLIASPLFGLKEIIQNKSTEGMPFPIILSGTVVTFMW 517
+P+ + G + F + SPL L ++IQ KST+ + +P+ ++ + + W
Sbjct: 116 WLLVPNPEARLQQLGLFCSVFTISMYLSPLADLAKVIQTKSTQCLSYPLTIATLLTSASW 175
Query: 518 LLYGIILRNKFLVVQNVVALLLCGSQLSLFVIYP 619
LYG LR+ +++V N ++ + LF YP
Sbjct: 176 CLYGFRLRDPYIMVSNFPGIVTSFIRFWLFWKYP 209
>AF126023-1|AAF17232.1| 221|Homo sapiens stromal cell protein
protein.
Length = 221
Score = 77.0 bits (181), Expect = 6e-14
Identities = 45/154 (29%), Positives = 76/154 (49%), Gaps = 4/154 (2%)
Frame = +2
Query: 170 LQYGYILRDDTMIQVNMFGLALNIIYVMIYFNYSQQKVKVWAQIGLAGAVSAALIGYAQ- 346
L YG + D +I VN G AL +Y++ Y +Y +K V Q A + L+GY
Sbjct: 58 LSYGALKGDGILIVVNTVGAALQTLYILAYLHYCPRKRVVLLQT--ATLLGVLLLGYGYF 115
Query: 347 ---TEDPKLVETRFGTIITAFMFYLIASPLFGLKEIIQNKSTEGMPFPIILSGTVVTFMW 517
+P+ + G + F + SPL L ++IQ KST+ + +P+ ++ + + W
Sbjct: 116 WLLVPNPEARLQQLGLFCSVFTISMYLSPLADLAKVIQTKSTQCLSYPLTIATLLTSASW 175
Query: 518 LLYGIILRNKFLVVQNVVALLLCGSQLSLFVIYP 619
LYG LR+ +++V N ++ + LF YP
Sbjct: 176 CLYGFRLRDPYIMVSNFPGIVTSFIRFWLFWKYP 209
>CR457148-1|CAG33429.1| 221|Homo sapiens LOC55974 protein.
Length = 221
Score = 74.5 bits (175), Expect = 3e-13
Identities = 44/154 (28%), Positives = 75/154 (48%), Gaps = 4/154 (2%)
Frame = +2
Query: 170 LQYGYILRDDTMIQVNMFGLALNIIYVMIYFNYSQQKVKVWAQIGLAGAVSAALIGYAQ- 346
L YG + D +I VN G AL +Y++ Y +Y +K V Q A + L+GY
Sbjct: 58 LSYGALKGDGILIVVNTVGAALQTLYILAYLHYCPRKRVVLLQT--ATLLGVLLLGYGYF 115
Query: 347 ---TEDPKLVETRFGTIITAFMFYLIASPLFGLKEIIQNKSTEGMPFPIILSGTVVTFMW 517
+P+ + + F + SPL L ++IQ KST+ + +P+ ++ + + W
Sbjct: 116 WLLVPNPEARLQQLALFCSVFTISMYLSPLADLAKVIQTKSTQCLSYPLTIATLLTSASW 175
Query: 518 LLYGIILRNKFLVVQNVVALLLCGSQLSLFVIYP 619
LYG LR+ +++V N ++ + LF YP
Sbjct: 176 CLYGFRLRDPYIMVSNFPGIVTSFIRFWLFWKYP 209
>AL691442-9|CAI15324.1| 166|Homo sapiens recombination activating
gene 1 activating protein 1 protein.
Length = 166
Score = 52.8 bits (121), Expect = 1e-06
Identities = 29/108 (26%), Positives = 53/108 (49%), Gaps = 4/108 (3%)
Frame = +2
Query: 308 AGAVSAALIGYAQ----TEDPKLVETRFGTIITAFMFYLIASPLFGLKEIIQNKSTEGMP 475
A + L+GY +P+ + G + F + SPL L ++IQ KST+ +
Sbjct: 47 ATLLGVLLLGYGYFWLLVPNPEARLQQLGLFCSVFTISMYLSPLADLAKVIQTKSTQCLS 106
Query: 476 FPIILSGTVVTFMWLLYGIILRNKFLVVQNVVALLLCGSQLSLFVIYP 619
+P+ ++ + + W LYG LR+ +++V N ++ + LF YP
Sbjct: 107 YPLTIATLLTSASWCLYGFRLRDPYIMVSNFPGIVTSFIRFWLFWKYP 154
>AL691442-6|CAI15321.1| 156|Homo sapiens recombination activating
gene 1 activating protein 1 protein.
Length = 156
Score = 52.8 bits (121), Expect = 1e-06
Identities = 29/108 (26%), Positives = 53/108 (49%), Gaps = 4/108 (3%)
Frame = +2
Query: 308 AGAVSAALIGYAQ----TEDPKLVETRFGTIITAFMFYLIASPLFGLKEIIQNKSTEGMP 475
A + L+GY +P+ + G + F + SPL L ++IQ KST+ +
Sbjct: 37 ATLLGVLLLGYGYFWLLVPNPEARLQQLGLFCSVFTISMYLSPLADLAKVIQTKSTQCLS 96
Query: 476 FPIILSGTVVTFMWLLYGIILRNKFLVVQNVVALLLCGSQLSLFVIYP 619
+P+ ++ + + W LYG LR+ +++V N ++ + LF YP
Sbjct: 97 YPLTIATLLTSASWCLYGFRLRDPYIMVSNFPGIVTSFIRFWLFWKYP 144
>AF126024-1|AAF17233.1| 179|Homo sapiens stromal cell protein
isoform protein.
Length = 179
Score = 52.8 bits (121), Expect = 1e-06
Identities = 29/108 (26%), Positives = 53/108 (49%), Gaps = 4/108 (3%)
Frame = +2
Query: 308 AGAVSAALIGYAQ----TEDPKLVETRFGTIITAFMFYLIASPLFGLKEIIQNKSTEGMP 475
A + L+GY +P+ + G + F + SPL L ++IQ KST+ +
Sbjct: 60 ATLLGVLLLGYGYFWLLVPNPEARLQQLGLFCSVFTISMYLSPLADLAKVIQTKSTQCLS 119
Query: 476 FPIILSGTVVTFMWLLYGIILRNKFLVVQNVVALLLCGSQLSLFVIYP 619
+P+ ++ + + W LYG LR+ +++V N ++ + LF YP
Sbjct: 120 YPLTIATLLTSASWCLYGFRLRDPYIMVSNFPGIVTSFIRFWLFWKYP 167
>BC009621-1|AAH09621.1| 167|Homo sapiens RAG1AP1 protein protein.
Length = 167
Score = 42.3 bits (95), Expect = 0.002
Identities = 18/60 (30%), Positives = 35/60 (58%)
Frame = +2
Query: 440 EIIQNKSTEGMPFPIILSGTVVTFMWLLYGIILRNKFLVVQNVVALLLCGSQLSLFVIYP 619
++IQ KST+ + +P+ ++ + + W LYG LR+ +++V N ++ + LF YP
Sbjct: 96 KVIQTKSTQCLSYPLTIATLLTSASWCLYGFRLRDPYIMVSNFPGIVTSFIRFWLFWKYP 155
Score = 37.1 bits (82), Expect = 0.064
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +2
Query: 170 LQYGYILRDDTMIQVNMFGLALNIIYVMIYFNYSQQKVKV 289
L YG + D +I VN G AL +Y++ Y +Y +K KV
Sbjct: 58 LSYGALKGDGILIVVNTVGAALQTLYILAYLHYCPRKAKV 97
>AL691442-7|CAI15322.1| 167|Homo sapiens recombination activating
gene 1 activating protein 1 protein.
Length = 167
Score = 42.3 bits (95), Expect = 0.002
Identities = 18/60 (30%), Positives = 35/60 (58%)
Frame = +2
Query: 440 EIIQNKSTEGMPFPIILSGTVVTFMWLLYGIILRNKFLVVQNVVALLLCGSQLSLFVIYP 619
++IQ KST+ + +P+ ++ + + W LYG LR+ +++V N ++ + LF YP
Sbjct: 96 KVIQTKSTQCLSYPLTIATLLTSASWCLYGFRLRDPYIMVSNFPGIVTSFIRFWLFWKYP 155
Score = 37.1 bits (82), Expect = 0.064
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +2
Query: 170 LQYGYILRDDTMIQVNMFGLALNIIYVMIYFNYSQQKVKV 289
L YG + D +I VN G AL +Y++ Y +Y +K KV
Sbjct: 58 LSYGALKGDGILIVVNTVGAALQTLYILAYLHYCPRKAKV 97
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,365,220
Number of Sequences: 237096
Number of extensions: 1993035
Number of successful extensions: 5033
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5029
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8511181328
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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