Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_F09
         (693 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    26   0.25 
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    26   0.25 
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    26   0.34 
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    22   4.1  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    22   5.5  

>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 26.2 bits (55), Expect = 0.25
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +1

Query: 1   GKSEMAAIGSGRGTMDSQNQVQSDTVDRLKLLYPNVNEEETPLPRAW 141
           G +  A+IGSG GT +  +        + + ++P V    T + RAW
Sbjct: 153 GDASNASIGSGEGTGEEDDDTNGKKNQKKRGIFPKV---ATNILRAW 196


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 26.2 bits (55), Expect = 0.25
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +1

Query: 1   GKSEMAAIGSGRGTMDSQNQVQSDTVDRLKLLYPNVNEEETPLPRAW 141
           G +  A+IGSG GT +  +        + + ++P V    T + RAW
Sbjct: 309 GDASNASIGSGEGTGEEDDDTNGKKNQKKRGIFPKV---ATNILRAW 352


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 25.8 bits (54), Expect = 0.34
 Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
 Frame = -1

Query: 375 PPGQSVH--VDSMCGQSDPHVPVPSFRYDSNLEVVEP-TRGGYRMCCPDAGRVSVSLTMT 205
           PP +S +  +     QS P+ P P+   D+   + +  T+  YR+   D  R+ +    T
Sbjct: 118 PPARSPYEWIKKTSYQSQPN-PEPADFADAPDAIGKTRTKDKYRVVYTDLQRIELEKEFT 176

Query: 204 FIMHS*IILRQSDVAE 157
           F+     I R+S++AE
Sbjct: 177 FVSKYITIKRKSELAE 192



 Score = 21.8 bits (44), Expect = 5.5
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 7   SEMAAIGSGRGTMDSQNQVQ 66
           SEM++ G+G G +  Q Q Q
Sbjct: 94  SEMSSPGAGSGNLSPQIQTQ 113


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 12/34 (35%), Positives = 14/34 (41%)
 Frame = +1

Query: 367 PGWDKHSYGYHGDDGHSFCSSGTGQPYGPTFTTG 468
           PG   H Y    +   S  SSG+  PY P    G
Sbjct: 121 PGPPSHPYTVISNGYSSPMSSGSYDPYSPNGKIG 154


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 7   SEMAAIGSGRGTMDSQNQVQ 66
           SEM++ G+G G +  Q Q Q
Sbjct: 94  SEMSSPGAGSGNLSPQIQTQ 113


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,534
Number of Sequences: 336
Number of extensions: 3765
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18218375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)