Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_F_F09
(693 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces ... 200 1e-52
SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr... 77 2e-15
SPCC320.09 |hem15||ferrochelatase|Schizosaccharomyces pombe|chr ... 27 3.4
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 3.4
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch... 26 4.5
SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2 alpha-1,... 25 7.9
SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyce... 25 7.9
>SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 486
Score = 200 bits (489), Expect = 1e-52
Identities = 87/184 (47%), Positives = 123/184 (66%), Gaps = 1/184 (0%)
Frame = +1
Query: 103 NVNEEETPLPRAWSTKDKFSYIGLSQNNLRVHYKG-HGKTHRDAASVRATHPIPAACGLY 279
NV +P +W+ DK + L NN+ V++ G T DAASV+A H IP+ +Y
Sbjct: 55 NVTNTPKAIPSSWNPNDKSDSLELMNNNMGVYFFGPEAGTEHDAASVKADHAIPSNTSIY 114
Query: 280 YFEVRIVSKGRDGYMGIGLSAHGVNMNRLPGWDKHSYGYHGDDGHSFCSSGTGQPYGPTF 459
Y+E++I+S+G++G MG+G + NRLPG S+GYHG+ G F S TG+ YGP F
Sbjct: 115 YYEIQILSRGKEGKMGVGFCRKSMQTNRLPGCTAESWGYHGNSGEKFNCSKTGEAYGPEF 174
Query: 460 TTGDVIGCGVNLVDNTCFYTKNGHHLGIAFRGLPPNLYPTVGLQTPGEVVDTNFGQQPFV 639
TTGD+IGCGVN ++ T FYTKNG +LG+AF+ + LYP +GL++ GE V+ NFGQ PF+
Sbjct: 175 TTGDIIGCGVNFINRTIFYTKNGAYLGVAFKKVSDVLYPVIGLKSHGEHVEVNFGQNPFL 234
Query: 640 FDIE 651
+DI+
Sbjct: 235 YDID 238
>SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 382
Score = 77.4 bits (182), Expect = 2e-15
Identities = 53/143 (37%), Positives = 70/143 (48%), Gaps = 3/143 (2%)
Frame = +1
Query: 253 PIPAACGLYYFEVRIVSKGRDGYMGIGLSAHGVNMNRLPGWDKHSYGYHGDDGHSFCSSG 432
P+ +YYFEV+++ D + IGL+ RLPGW+ S Y D S
Sbjct: 159 PLQRINEVYYFEVKLLDVPIDTLVSIGLATKPYPPFRLPGWNFWSTAYVSDGTRRSNSPF 218
Query: 433 TGQPYGPTFTTGDVIGCGVNLVDNTCFYTKNGH---HLGIAFRGLPPNLYPTVGLQTPGE 603
TG+PY + GDVIG G N F+T+NG L +R NLYPTVG P
Sbjct: 219 TGKPYSSFYQQGDVIGVGYKPKCNRIFFTRNGRRCAELPCTYR----NLYPTVGAIGPC- 273
Query: 604 VVDTNFGQQPFVFDIEDMLKELR 672
+ N GQ +VF IE +K+ R
Sbjct: 274 TLHVNLGQAGYVF-IEANIKKWR 295
>SPCC320.09 |hem15||ferrochelatase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 384
Score = 26.6 bits (56), Expect = 3.4
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -1
Query: 354 VDSMCGQSDPHVPVPSFRY 298
+D C +S PH+P +FRY
Sbjct: 112 LDKKCPESAPHLPFVAFRY 130
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.6 bits (56), Expect = 3.4
Identities = 27/88 (30%), Positives = 35/88 (39%), Gaps = 1/88 (1%)
Frame = +2
Query: 260 PPRVGSTTSRLESYLKDGTGTWGSDCPHMEST*TDCPGGTSIPXXXXXXXXIRFVLPVPG 439
PP S+TS T + G+ + ST T C TSIP + +P
Sbjct: 360 PPTSTSSTSTPPP--PASTSSTGTSSSPLLSTSTSCTTSTSIPPTGNSTTPVTPTVPPTS 417
Query: 440 SPTD-PRSRPETSSDVELTWSTTRASTP 520
S T + TS+ V T ST STP
Sbjct: 418 SSTPLTTTNCTTSTSVPYT-STPVTSTP 444
Score = 25.8 bits (54), Expect = 5.9
Identities = 26/87 (29%), Positives = 35/87 (40%)
Frame = +2
Query: 260 PPRVGSTTSRLESYLKDGTGTWGSDCPHMEST*TDCPGGTSIPXXXXXXXXIRFVLPVPG 439
P ST++ TGT S P ST T C TSIP + +P P
Sbjct: 307 PTSTSSTSTPPPPASTSSTGTSSSPLP---STSTSCTTSTSIPPTGNSTTPVTPTVP-PT 362
Query: 440 SPTDPRSRPETSSDVELTWSTTRASTP 520
S + + P +S T ST +S+P
Sbjct: 363 STSSTSTPPPPAS----TSSTGTSSSP 385
>SPBC25B2.07c |mug164||microtubule-associated
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 501
Score = 26.2 bits (55), Expect = 4.5
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = -3
Query: 664 PSACPRCRKRTAADRSSCPPPRRASEGR-LSDINL 563
PSA PR R+ + S PP R S R LS +N+
Sbjct: 220 PSASPRISVRSLGNSSVVRPPTRTSTTRPLSRVNV 254
>SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2
alpha-1,3-glucosyltransferase Alg12 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 546
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -2
Query: 368 GNLFMLTPCADSPIPMYPSRPLDTI 294
G LF+L CA + Y SRPL I
Sbjct: 118 GALFILFSCAQFHLVYYMSRPLSNI 142
>SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 335
Score = 25.4 bits (53), Expect = 7.9
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +2
Query: 422 VLPVPGSPTDPRSRPETSSDVELTWS 499
V + P+DP S P +S V +WS
Sbjct: 238 VFKISKQPSDPNSSPTSSVTVSSSWS 263
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,960,412
Number of Sequences: 5004
Number of extensions: 63347
Number of successful extensions: 181
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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