Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_F_F09
(693 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0225 - 21063445-21063636,21063726-21063911,21064052-210641... 142 2e-34
11_01_0281 + 2086674-2087652,2089200-2089483 54 1e-07
07_03_1345 + 25919379-25920866,25921342-25921962,25922733-259228... 52 3e-07
12_01_0285 + 2120130-2121204,2122842-2123116 52 4e-07
04_04_1285 - 32382614-32382720,32383032-32383710,32383816-323839... 36 0.040
10_07_0015 + 11813465-11813479,11814342-11814422,11814842-118149... 30 2.0
02_05_0149 + 26290236-26290880 30 2.0
12_01_0454 + 3580332-3581714 29 2.6
12_01_0135 + 1042889-1044255,1045368-1045809 29 3.5
11_01_0133 + 1121392-1122731,1123417-1123858 29 3.5
01_01_1064 + 8393519-8394475 29 3.5
12_01_0325 + 2505988-2506560 29 4.6
05_05_0368 + 24449793-24451199,24451867-24451927,24452256-24452710 29 4.6
09_06_0111 - 20924838-20924969,20925147-20925290,20925391-209254... 28 6.1
03_02_0834 - 11630288-11630500,11630531-11630623,11630844-116310... 28 6.1
09_04_0225 - 15855544-15855727,15855796-15856406 28 8.1
07_03_0172 + 14697741-14697869,14697878-14697998,14698134-146982... 28 8.1
07_01_0375 - 2790287-2790675,2790843-2793783 28 8.1
04_03_0757 + 19316949-19317892,19318403-19318430,19318932-19319042 28 8.1
03_06_0607 + 35037467-35038624 28 8.1
03_02_0845 - 11700830-11701327 28 8.1
01_06_1557 - 38231826-38233391 28 8.1
>02_04_0225 -
21063445-21063636,21063726-21063911,21064052-21064138,
21064589-21064648,21064984-21065052,21065684-21065837,
21066127-21066203,21066634-21066679,21067167-21067253,
21067653-21067799,21069042-21069304
Length = 455
Score = 142 bits (345), Expect = 2e-34
Identities = 67/185 (36%), Positives = 98/185 (52%), Gaps = 1/185 (0%)
Frame = +1
Query: 115 EETPLPRAWSTKDKFSYIGL-SQNNLRVHYKGHGKTHRDAASVRATHPIPAACGLYYFEV 291
E P P +T + + S + + V Y G + D V+A P P +YYFE+
Sbjct: 2 EAEPAPSELNTTNSSGLFAVVSTDRMSVRYLGVNQHGHDVGVVQANRPAPTRRAVYYFEM 61
Query: 292 RIVSKGRDGYMGIGLSAHGVNMNRLPGWDKHSYGYHGDDGHSFCSSGTGQPYGPTFTTGD 471
+ + G+ G IG + M R PGW+ +S GYHGDDG+ + G + +GP FT+GD
Sbjct: 62 GVKNAGQKGQTSIGFTTENFKMRRQPGWESNSCGYHGDDGYLYRGPGKSESFGPKFTSGD 121
Query: 472 VIGCGVNLVDNTCFYTKNGHHLGIAFRGLPPNLYPTVGLQTPGEVVDTNFGQQPFVFDIE 651
IG G+N F+TKNG +G + + LYPT+ + + E V NFG++PF FDIE
Sbjct: 122 TIGAGINYFSQEFFFTKNGSLVGSFQKEIKGPLYPTIAVHSQDEEVTVNFGKEPFCFDIE 181
Query: 652 DMLKE 666
+ E
Sbjct: 182 GYIFE 186
>11_01_0281 + 2086674-2087652,2089200-2089483
Length = 420
Score = 53.6 bits (123), Expect = 1e-07
Identities = 41/155 (26%), Positives = 69/155 (44%), Gaps = 3/155 (1%)
Frame = +1
Query: 109 NEEETPLPRAWSTKDKFSYIGLSQNNLRVHYKGHGKTHRDAASVRATHPIPAACGLYYFE 288
N++ LP S K + +S + L G K +R VRAT + A G +YFE
Sbjct: 168 NDDAPDLPVLLSRVFKSDKVEVSDDRLTA---GSTKGYR---MVRATRGV--AAGAWYFE 219
Query: 289 VRIVSKGRDGYMGIGLSAHGVNMNRLPGWDKHSYGYHGDDGHSFCSSGTGQPYGPTFTTG 468
V+++ G G+ +G + + +++ G+D +GY DG + + G
Sbjct: 220 VKVLHLGSTGHTRLGWATNNADIHAPVGYDVFGFGYRDMDGTKVHKAWRANYADQGYGEG 279
Query: 469 DVIGCGVNLVDNTCFYTKNG---HHLGIAFRGLPP 564
DV+G ++L D + K H+ G+ FR P
Sbjct: 280 DVLGFYIHLPDGELYEPKQPFLVHYKGLPFRAEAP 314
>07_03_1345 +
25919379-25920866,25921342-25921962,25922733-25922893,
25923284-25923422,25923509-25923592,25923944-25923982,
25924037-25924222,25924347-25924478,25924810-25925009,
25925294-25925498,25925618-25925944
Length = 1193
Score = 52.4 bits (120), Expect = 3e-07
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Frame = +1
Query: 439 QPYGPTFTTGDVIGCGVNLVDNTCFYTKNGHHLGIAFRGL-----PPNLYPTVGLQTPGE 603
+ YG + GDVIGC +NL + +NG+ LG+AF G+ YP + L + GE
Sbjct: 199 EQYGQMWAVGDVIGCCINLDAGEISFYRNGNFLGVAFDGIRKVGPRKGYYPAISL-SEGE 257
Query: 604 VVDTNFGQQPFVFDIE 651
NFG PF + ++
Sbjct: 258 RCHLNFGSHPFRYPVD 273
>12_01_0285 + 2120130-2121204,2122842-2123116
Length = 449
Score = 52.0 bits (119), Expect = 4e-07
Identities = 31/112 (27%), Positives = 53/112 (47%), Gaps = 3/112 (2%)
Frame = +1
Query: 238 VRATHPIPAACGLYYFEVRIVSKGRDGYMGIGLSAHGVNMNRLPGWDKHSYGYHGDDGHS 417
VRAT + A G +YFEV+++ G G+ +G + + +++ G+D +GY DG
Sbjct: 202 VRATRGV--AAGAWYFEVKVLHLGSTGHTRLGWATNNADIHAPVGYDVFGFGYRDMDGTK 259
Query: 418 FCSSGTGQPYGPTFTTGDVIGCGVNLVDNTCFYTKNG---HHLGIAFRGLPP 564
+ + GDV+G ++L D + K H+ G+ FR P
Sbjct: 260 VHKAWRANYAEQGYGDGDVLGFYIHLPDGELYEPKQPFLVHYKGLPFRAEAP 311
>04_04_1285 -
32382614-32382720,32383032-32383710,32383816-32383926,
32384007-32384065,32384163-32384271,32384387-32384575,
32384650-32385476,32385501-32385633
Length = 737
Score = 35.5 bits (78), Expect = 0.040
Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Frame = +1
Query: 328 IGLSAHGVNMNRLPGWDKHSYGYHGDDGHSFCSSGTGQPYGPTFTTGDVIGCGVNLVDN- 504
+G+S G + L G HS+G+ G F G YG F GD + C V+L
Sbjct: 129 VGVSRGGDPVGAL-GETGHSFGFGGTG--KFSHQGKFVEYGVKFGVGDTVVCAVDLDSKP 185
Query: 505 --TCFYTKNGHHLGIA 546
+ +++NG LGIA
Sbjct: 186 LASIGFSRNGEWLGIA 201
>10_07_0015 +
11813465-11813479,11814342-11814422,11814842-11814951,
11815553-11815608,11816086-11816180,11817021-11817126,
11817261-11817577,11817666-11817848,11817976-11818173,
11819029-11819346,11819721-11819813
Length = 523
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +1
Query: 85 LKLLYPNVNEEETPLPRAWSTKDKFSYIGLSQNNLRVHYKGH 210
L L+Y +++ +P+ WS K +F GL + LR H + +
Sbjct: 16 LVLIYDK-DDQSSPVANEWSIKKRFELAGLLSSILRTHLQAY 56
>02_05_0149 + 26290236-26290880
Length = 214
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = +1
Query: 307 GRDGYMGIGLSAHGVNMNRLPGWDKHSYGYHGDDGHSFCSSGTGQPYGPTFTTGDV 474
G G G G +G + G+ + GY+G+ G +G G YG + GDV
Sbjct: 133 GGGGGGGGGGRNYGGGSGGIGGYGNYGGGYNGEPGGGGGGAGEGGGYGGDYGGGDV 188
>12_01_0454 + 3580332-3581714
Length = 460
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 184 NLRVHYKGHGKTHRDAASVRATHPIP 261
NLR+H +GHG ++ AA++ P P
Sbjct: 238 NLRMHMRGHGDEYKSAAALAKPPPPP 263
>12_01_0135 + 1042889-1044255,1045368-1045809
Length = 602
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/28 (53%), Positives = 17/28 (60%)
Frame = -3
Query: 643 RKRTAADRSSCPPPRRASEGRLSDINLA 560
RKR A+D PPPRR G LSD+ A
Sbjct: 3 RKRPASDMD-LPPPRRHVTGDLSDVTAA 29
>11_01_0133 + 1121392-1122731,1123417-1123858
Length = 593
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/28 (53%), Positives = 17/28 (60%)
Frame = -3
Query: 643 RKRTAADRSSCPPPRRASEGRLSDINLA 560
RKR A+D PPPRR G LSD+ A
Sbjct: 3 RKRPASDMD-LPPPRRHVTGDLSDVTAA 29
>01_01_1064 + 8393519-8394475
Length = 318
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = -3
Query: 664 PSACPRCRKRTAADRSSCPPPRR 596
PS P R+ T+++RSS PPPRR
Sbjct: 262 PSLQP-ARRSTSSERSSAPPPRR 283
>12_01_0325 + 2505988-2506560
Length = 190
Score = 28.7 bits (61), Expect = 4.6
Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = -1
Query: 306 FRYDSNL-EVVEPTRGGYRMCCPDAGRVSVSL 214
FRYD++ +VVE TR GY + C A VS +L
Sbjct: 49 FRYDASAYDVVEVTRAGY-LSCSAASPVSAAL 79
>05_05_0368 + 24449793-24451199,24451867-24451927,24452256-24452710
Length = 640
Score = 28.7 bits (61), Expect = 4.6
Identities = 26/95 (27%), Positives = 39/95 (41%), Gaps = 4/95 (4%)
Frame = +1
Query: 208 HGKTHRDAASVRATHPIPAACGLYYFEVRIVSKGRDGYMGIGLSAHGVNMNRLPGWDKHS 387
HG S+ AT+P P GL + + G DG+ I ++A + R P +
Sbjct: 62 HGSAATSVVSI-ATYPFPEVAGLPRGVENLSTAGADGWR-IDVAATNEALTR-PAQEALI 118
Query: 388 YGYHGD----DGHSFCSSGTGQPYGPTFTTGDVIG 480
G D D H F ++G + G + VIG
Sbjct: 119 SGQSPDALITDAHFFWNAGLAEELGVPCVSFSVIG 153
>09_06_0111 -
20924838-20924969,20925147-20925290,20925391-20925453,
20925993-20926116,20926779-20927005,20927088-20927255,
20927348-20927498,20927567-20927889
Length = 443
Score = 28.3 bits (60), Expect = 6.1
Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Frame = -3
Query: 679 SGRAVPSACPRCRKRTAA-DRSSCPPPRRASEGR 581
S R PSA P + R+SC PP RAS R
Sbjct: 23 SARRAPSASPAAAASLPSPSRASCAPPLRASAAR 56
>03_02_0834 -
11630288-11630500,11630531-11630623,11630844-11631050,
11631301-11633089,11633817-11634145
Length = 876
Score = 28.3 bits (60), Expect = 6.1
Identities = 17/57 (29%), Positives = 25/57 (43%)
Frame = +2
Query: 152 ISSATSDCRKIIYECIIKVMVRLTETRPASGQHIRYPPRVGSTTSRLESYLKDGTGT 322
I + D R++ + ++ RLTE A QH R + + T RLE D T
Sbjct: 334 IQTLIEDRRQLALQLSSQIKARLTERFAAKEQHKRSKVELNTRTRRLEKEKSDVQST 390
>09_04_0225 - 15855544-15855727,15855796-15856406
Length = 264
Score = 27.9 bits (59), Expect = 8.1
Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 7/40 (17%)
Frame = -3
Query: 679 SGRAVPSACPRCRKRTA-------ADRSSCPPPRRASEGR 581
S A PSA RCR TA R+ CPP R + R
Sbjct: 169 SAGATPSATTRCRSCTAWATSCPGTSRAGCPPTRTSGRNR 208
>07_03_0172 +
14697741-14697869,14697878-14697998,14698134-14698226,
14700888-14700946,14701003-14701599,14702813-14703020,
14703102-14703178,14703263-14703302,14703413-14703473,
14704120-14704189,14705014-14705235
Length = 558
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +3
Query: 582 RPSDARRGGGHELRSAAVR 638
RP+ A GGGH L S+A+R
Sbjct: 24 RPTTALNGGGHNLNSSAMR 42
>07_01_0375 - 2790287-2790675,2790843-2793783
Length = 1109
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +1
Query: 76 VDRLKLLYPNVNEEETPLPRAWSTKDKFSYIGLSQNNL 189
+ RL+++ +N+ P+P S + +GL+QNNL
Sbjct: 194 LQRLRIIRAGLNDLSGPIPVEISACASLAVLGLAQNNL 231
>04_03_0757 + 19316949-19317892,19318403-19318430,19318932-19319042
Length = 360
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -3
Query: 664 PSACPRCRKRTAADRSSCPPPRRASEG 584
PS+ P +R+ R PPPRRA G
Sbjct: 56 PSSSPISAERSRRQRRRLPPPRRAPPG 82
>03_06_0607 + 35037467-35038624
Length = 385
Score = 27.9 bits (59), Expect = 8.1
Identities = 9/19 (47%), Positives = 16/19 (84%)
Frame = +1
Query: 184 NLRVHYKGHGKTHRDAASV 240
NLR+H +GHG+ ++ AA++
Sbjct: 178 NLRMHMRGHGEEYKSAAAL 196
>03_02_0845 - 11700830-11701327
Length = 165
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = -3
Query: 691 WRPWSGRAVPSACPRCRKRTAADRSSCPPPRRAS 590
W GR V A PR R R +A S+ P RRA+
Sbjct: 22 WSQRRGRGV--AAPRARVRVSASASTVAPERRAA 53
>01_06_1557 - 38231826-38233391
Length = 521
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/17 (64%), Positives = 14/17 (82%), Gaps = 1/17 (5%)
Frame = -3
Query: 538 LNDVHSWCRS-TCCRPS 491
L++ +SWCRS T CRPS
Sbjct: 298 LDEFYSWCRSATICRPS 314
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,310,428
Number of Sequences: 37544
Number of extensions: 498356
Number of successful extensions: 1653
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1652
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -