Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_F09
         (693 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       24   1.6  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   3.6  
AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           22   4.8  
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           22   4.8  
EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate c...    22   6.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   6.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   6.4  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   8.4  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 18/64 (28%), Positives = 25/64 (39%)
 Frame = +1

Query: 25  GSGRGTMDSQNQVQSDTVDRLKLLYPNVNEEETPLPRAWSTKDKFSYIGLSQNNLRVHYK 204
           G GRG +   N     +V +       +NE E      W   DK + I   +   R   +
Sbjct: 28  GKGRGFIIQNNNNDDWSVGKKNSNSGTINESEFNDENYWQCNDKKTDI---EETGRGKGR 84

Query: 205 GHGK 216
           GHGK
Sbjct: 85  GHGK 88


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 17/60 (28%), Positives = 24/60 (40%)
 Frame = -1

Query: 501 VDQVNSTSDDVSGRERGSVGLPGTGRTKRMXXXXXXXVGMLVPPGQSVHVDSMCGQSDPH 322
           +D  ++   D    +R SV       +  M       +G L+P G SVH DS    S  H
Sbjct: 339 MDSSDTIDIDSHMSDRASVSSKNAADSDNMMMITPELLG-LMPSGSSVHSDSGENNSRGH 397


>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +3

Query: 588 SDARRGGGHELRSAAVRFRHRGHAEGTAR 674
           SD  RG G+ + S +      GH EG  R
Sbjct: 26  SDRVRGNGNAIVSNSASNSVHGHREGLGR 54


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +3

Query: 588 SDARRGGGHELRSAAVRFRHRGHAEGTAR 674
           SD  RG G+ + S +      GH EG  R
Sbjct: 27  SDRVRGNGNAIVSNSASNSVHGHREGLGR 55


>EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate
           carboxykinase protein.
          Length = 118

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -1

Query: 312 PSFRYDSNLEVVEPTRGGYRMCC 244
           PS    +NL +++PT  GY++ C
Sbjct: 19  PSACGKTNLAMMKPTLPGYKIEC 41


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +2

Query: 437  GSPTDPRSRPETSSDVELTWS 499
            G P +  +R  +SS++ +TWS
Sbjct: 1008 GPPINLEARALSSSEILITWS 1028


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +2

Query: 437  GSPTDPRSRPETSSDVELTWS 499
            G P +  +R  +SS++ +TWS
Sbjct: 1004 GPPINLEARALSSSEILITWS 1024


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 642 ENERLLTEVRVHHLAGRLKAD 580
           E ERLL  V   H+A +++ D
Sbjct: 232 EQERLLLSVLPEHVAVKMRQD 252


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,020
Number of Sequences: 438
Number of extensions: 5059
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)