Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_F08
         (756 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.03c |erv25||COPII-coated vesicle component Erv25 |Schiz...    91   2e-19
SPCC24B10.17 |emp24||COPII-coated vesicle component Emp24 |Schiz...    63   4e-11
SPBC16E9.09c |||COPII vesicle coat component Erp5/Erp6|Schizosac...    57   3e-09
SPAC17A5.08 |||COPII-coated vesicle component Erp2/3/4 |Schizosa...    39   7e-04
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p...    31   0.13 
SPAC186.05c |||human TMEM165 homolog|Schizosaccharomyces pombe|c...    28   1.7  
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    27   3.8  
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    26   6.7  
SPAC139.04c |fap2||L-saccharopine oxidase|Schizosaccharomyces po...    25   8.8  

>SPAC23H4.03c |erv25||COPII-coated vesicle component Erv25
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 216

 Score = 91.1 bits (216), Expect = 2e-19
 Identities = 58/180 (32%), Positives = 88/180 (48%), Gaps = 6/180 (3%)
 Frame = +3

Query: 174 CLKEELHANVLVAGEYDVTEIQG--QRVDYIIKDSKGHILSQKDTVTKGK-FSFVTENYD 344
           CL+E +    LV      T   G  Q +  +I DS G+  S    V   K  +F  +   
Sbjct: 36  CLREYVGEKNLVIVNLKTTGNMGDGQTLSMMITDSSGNTHSSIQNVLGEKSVAFDVDASA 95

Query: 345 MFEVCFISKVPSERRGIPHQ---VSLDIKIGIEAKTYEGIGEAAKLKPMEVELKRLXDLS 515
           M ++CF++ +        H+   V L+  +G +A  Y  + +A  L+P+E +++R  D  
Sbjct: 96  MLDICFLNTLTPGAIESEHKKRSVKLEFTVGADADDYSSLQKANNLEPVEADIRRARDFI 155

Query: 516 EAIVQDFTLMRKREEEMRDTNESTNNRVLFFSIFSMACLLGLATWQVLYLRRFFKAKKLI 695
           E I      ++ RE   R+TNESTN RV  F+  +   L  L  WQ+LYLR FF+ K LI
Sbjct: 156 EEIKGKIYYLQAREARFRNTNESTNERVKNFAYLTFISLFVLVIWQILYLRSFFQRKHLI 215


>SPCC24B10.17 |emp24||COPII-coated vesicle component Emp24
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 199

 Score = 63.3 bits (147), Expect = 4e-11
 Identities = 42/182 (23%), Positives = 80/182 (43%)
 Frame = +3

Query: 150 SLAPNTHKCLKEELHANVLVAGEYDVTEIQGQRVDYIIKDSKGHILSQKDTVTKGKFSFV 329
           +L P+  +C  E L  N  ++  Y       Q V   I +  G I+ Q+   +  ++SF 
Sbjct: 25  TLKPHQRECFYENLRNNDQMSVTYQTNVGGDQLVSMSIYNPAGQIMHQEVPNSMAQYSFT 84

Query: 330 TENYDMFEVCFISKVPSERRGIPHQVSLDIKIGIEAKTYEGIGEAAKLKPMEVELKRLXD 509
            +N   +  CF +             S ++   +    Y    +     P+  ++++L D
Sbjct: 85  VKNPGKYMYCFYNDALDGE-------SKEVLFNVHGVIYISDEDLDANNPLLGKVRQLHD 137

Query: 510 LSEAIVQDFTLMRKREEEMRDTNESTNNRVLFFSIFSMACLLGLATWQVLYLRRFFKAKK 689
               +  +      RE   R+T ESTN+RV ++SI     L+ +  +Q+ YL+R F+ K+
Sbjct: 138 TISKVKHEQEYFVARERIHRNTAESTNDRVKWWSILQTVILVSVCVFQIFYLKRLFEVKR 197

Query: 690 LI 695
           ++
Sbjct: 198 VV 199


>SPBC16E9.09c |||COPII vesicle coat component
           Erp5/Erp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 56.8 bits (131), Expect = 3e-09
 Identities = 36/142 (25%), Positives = 65/142 (45%)
 Frame = +3

Query: 270 SKGHILSQKDTVTKGKFSFVTENYDMFEVCFISKVPSERRGIPHQVSLDIKIGIEAKTYE 449
           +  H++ + D  +     F T N     +C++S           +  L + +  + K   
Sbjct: 75  ANNHLIYKNDLRSNEAVRFTTTNEGTHRICYLSTSDGAWFSST-KTRLHVDLASDDKYNL 133

Query: 450 GIGEAAKLKPMEVELKRLXDLSEAIVQDFTLMRKREEEMRDTNESTNNRVLFFSIFSMAC 629
                 + K +   +  L    E+I+ +  L R RE   RDT+ES N+RV+ ++I  +  
Sbjct: 134 IASSEDEAKDLTDRVAALNTRLESILGEQMLQRSREMTFRDTSESANSRVVRWTIVQIVV 193

Query: 630 LLGLATWQVLYLRRFFKAKKLI 695
           LL    WQ+ +L+RFF  +KL+
Sbjct: 194 LLVTCIWQLSHLQRFFVKEKLV 215


>SPAC17A5.08 |||COPII-coated vesicle component Erp2/3/4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 39.1 bits (87), Expect = 7e-04
 Identities = 33/146 (22%), Positives = 66/146 (45%), Gaps = 2/146 (1%)
 Frame = +3

Query: 249 VDYIIKDSKGHILSQKDTVTKGKFSFVTENYDMFEVCFISKVPS-ERRGIPHQVSLDIKI 425
           VDY+IK      ++      +    F  E    +E CF + + +   + +  +++++ ++
Sbjct: 60  VDYMIKAPSQKTVALGKKRRQADVFFTLEEKGEYEFCFDNHMSTFTDKIVTMEITMENEL 119

Query: 426 GIEAKTYEGIGEAAKLKPMEVELKRLXDLSEAI-VQDFTLMRKREEEMRDTNESTNNRVL 602
            + A T +   +  K       L+    LSE   VQ++   + RE     T +ST  R+ 
Sbjct: 120 SLPALTRDEAKDYKKDSMQSTVLEISTALSEIDRVQNY--FKTREHRNYSTVKSTQARIF 177

Query: 603 FFSIFSMACLLGLATWQVLYLRRFFK 680
           +FS+     ++ L+  QV  ++ FFK
Sbjct: 178 WFSLAESIMVVALSALQVFIVKTFFK 203


>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1040

 Score = 31.5 bits (68), Expect = 0.13
 Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = +3

Query: 228 TEIQGQRVDYIIKDSKGHILSQKDTVT-KGKFSFVTENYDMFEVCFISKVPSERRGI 395
           T ++GQ++ YI+ D+ G++     ++  K K+S V E   +    FI+ + S   G+
Sbjct: 259 TPLKGQKMHYIVCDTNGYLFGVYSSILGKNKWSLVMERLPIPPFDFITSLNSIHEGL 315


>SPAC186.05c |||human TMEM165 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 262

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
 Frame = +3

Query: 459 EAAKLKPMEVELKRLXDLSEAIVQDFTLMRKREE-EMRDTNESTNN-RVLFFSIFSMACL 632
           E+ +++  +  L+   D  E I+ +   M+K  E  +  +N S++  +  FF +FSM+C 
Sbjct: 108 ESKEVRESQQSLENEFDKVEKIIVNEEDMKKTLELGLPASNRSSSTLKDKFFKVFSMSCF 167

Query: 633 LGLATWQVLYLRRFFKAKKLI 695
             L  +   + R F KA  LI
Sbjct: 168 KNL--FSKKFSRAFIKAFALI 186


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1471

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
 Frame = -3

Query: 397  GIPLLSDGTLDIKQTSNIS*FSVTNENFPFVTVSFCDKMCPFESLII*STLCPCISVT-- 224
            GI  ++   L + Q+  +      + N   V +S C+ + PFE + + +   PC      
Sbjct: 1344 GISYVNSSLLPLMQSPLVFCLRKNDANDLDVILSVCNLLSPFEVVCLLNRYQPCAGENPL 1403

Query: 223  --SYSPATNTLAC 191
              S+S A   L+C
Sbjct: 1404 PKSFSKAVEALSC 1416


>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +3

Query: 162 NTHKCLKEELHANVLVAGEY 221
           NTH+C++     N  + GEY
Sbjct: 258 NTHRCIERSTDCNCPICGEY 277


>SPAC139.04c |fap2||L-saccharopine oxidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 433

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +2

Query: 650 ASPVPSQVLQSKEAN*VIK*QYASNVLMKL 739
           A PVPS +  + + N +++ +YA    MKL
Sbjct: 35  AEPVPSSMSAANDINKIVRPEYADLKYMKL 64


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,995,035
Number of Sequences: 5004
Number of extensions: 60424
Number of successful extensions: 136
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)