Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_F05
         (764 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   5.4  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   5.4  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    22   5.4  
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    21   9.5  
AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding prote...    21   9.5  
AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding prote...    21   9.5  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +1

Query: 13  DFFVAEFVTYTAXVIRGVYLVFIFLTCVIYCY 108
           D+F    ++ +  V  G+++ F+ L  +IY Y
Sbjct: 205 DYFNRGLLSASYLVCYGIWVYFVPLFLIIYSY 236


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +3

Query: 543 IKELNGMMVDGQPMKVQLSTSR 608
           ++ LNG+   G+P  +QL + R
Sbjct: 315 LRGLNGLEFAGRPQNLQLQSQR 336


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +1

Query: 13  DFFVAEFVTYTAXVIRGVYLVFIFLTCVIYCY 108
           D+F    ++ +  V  G+++ F+ L  +IY Y
Sbjct: 81  DYFNRGLLSASYLVCYGIWVYFVPLFLIIYSY 112


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +1

Query: 112 LYIVTHNLKCRAPVLSKSSSGTFLIK 189
           ++I TH L C+  +  K+ S  +L++
Sbjct: 34  MHIRTHTLPCKCHLCGKAFSRPWLLQ 59


>AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +1

Query: 70  LVFIFLTCVIYCYSLYIVTHNLKC 141
           +  + L CVIYC  ++  T  + C
Sbjct: 3   ITIVSLLCVIYCALVHADTVAILC 26


>AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +1

Query: 70  LVFIFLTCVIYCYSLYIVTHNLKC 141
           +  + L CVIYC  ++  T  + C
Sbjct: 3   ITIVSLLCVIYCALVHADTVAILC 26


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,061
Number of Sequences: 438
Number of extensions: 4698
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)