Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_F04
         (382 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_02_0115 - 11248021-11248101,11249017-11249118                       82   2e-16
05_03_0661 - 16726958-16726966,16727133-16727234                       54   3e-08
05_07_0185 - 28257291-28257616,28258202-28258469,28258580-28260061     28   2.2  
06_03_0336 + 19671500-19672150,19672681-19673301                       27   3.8  
08_02_0588 + 19036509-19039235                                         27   6.6  

>01_02_0115 - 11248021-11248101,11249017-11249118
          Length = 60

 Score = 81.8 bits (193), Expect = 2e-16
 Identities = 36/52 (69%), Positives = 42/52 (80%)
 Frame = +2

Query: 62  MAKSKXHTNHNQNRKAHRNGIKKPRKXRHESTLGMDPKFLRNQRFCKKGNLK 217
           MAKSK HT HNQ+ KAH+NGIKKP++ R  ST GMDPKFLRNQR+ +K N K
Sbjct: 1   MAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNQRYSRKHNKK 52


>05_03_0661 - 16726958-16726966,16727133-16727234
          Length = 36

 Score = 54.4 bits (125), Expect = 3e-08
 Identities = 23/36 (63%), Positives = 28/36 (77%)
 Frame = +2

Query: 62  MAKSKXHTNHNQNRKAHRNGIKKPRKXRHESTLGMD 169
           MAKSK HT HNQ+ KAH+NGIKKP++ R  ST G +
Sbjct: 1   MAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGFE 36


>05_07_0185 - 28257291-28257616,28258202-28258469,28258580-28260061
          Length = 691

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +2

Query: 125 KKPRKXRHESTLGMDPKFLRNQ-RFCKKG 208
           +KP K R    L +  +F+R+Q + CKKG
Sbjct: 454 RKPTKPRQRGKLKLQSQFIRDQNKICKKG 482


>06_03_0336 + 19671500-19672150,19672681-19673301
          Length = 423

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +1

Query: 160 WHGSKIFKESKVLQEG*PEASQATREGG 243
           WH    FK S+    G PEA+ A  EGG
Sbjct: 223 WHEINQFKSSEKSLVGMPEAAAAEEEGG 250


>08_02_0588 + 19036509-19039235
          Length = 908

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -1

Query: 232 ELLGWLQVTLLAKPLIP*KFWIHAKGGFVPG 140
           ELLGW QV   A  ++P +  + A   F PG
Sbjct: 423 ELLGWKQVLAQAANVLPKRRMVSATRRFPPG 453


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,619,276
Number of Sequences: 37544
Number of extensions: 131810
Number of successful extensions: 319
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 319
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 624784784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)