Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_F_F01
(817 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P40937 Cluster: Replication factor C subunit 5; n=51; E... 302 6e-81
UniRef50_P34429 Cluster: Putative replication factor C subunit 5... 267 3e-70
UniRef50_P38629 Cluster: Replication factor C subunit 3; n=15; D... 247 3e-64
UniRef50_Q5K796 Cluster: DNA replication factor, putative; n=5; ... 246 7e-64
UniRef50_Q9GR09 Cluster: Replication factor C3; n=9; Aconoidasid... 230 4e-59
UniRef50_A4IBL6 Cluster: Replication factor C, subunit 3, putati... 228 1e-58
UniRef50_Q2UJ68 Cluster: Replication factor C; n=15; Pezizomycot... 226 4e-58
UniRef50_Q01F45 Cluster: Rfc5 replication factor C subunit 5 (36... 221 2e-56
UniRef50_A2DS36 Cluster: ATPase, AAA family protein; n=1; Tricho... 218 1e-55
UniRef50_Q5CUE4 Cluster: Replication factor RFC3 AAA+ ATpase; n=... 122 4e-55
UniRef50_A7ATE5 Cluster: Replication factor C3 protein, putative... 217 4e-55
UniRef50_A0CAF3 Cluster: Chromosome undetermined scaffold_161, w... 210 4e-53
UniRef50_UPI000049A58F Cluster: activator 1 36 kda subunit; n=1;... 209 6e-53
UniRef50_UPI0000E4A8C8 Cluster: PREDICTED: similar to replicatio... 204 3e-51
UniRef50_A5E7K0 Cluster: Activator 1 41 kDa subunit; n=1; Lodder... 194 2e-48
UniRef50_Q245Y3 Cluster: ATPase, AAA family protein; n=2; Oligoh... 194 3e-48
UniRef50_A6R5J4 Cluster: Activator 1 subunit 3; n=1; Ajellomyces... 193 4e-48
UniRef50_P40348 Cluster: Replication factor C subunit 2; n=7; Sa... 192 9e-48
UniRef50_Q4WW89 Cluster: Replication factor C subunit; n=1; Aspe... 190 3e-47
UniRef50_P35249 Cluster: Replication factor C subunit 4; n=34; E... 190 5e-47
UniRef50_Q9XI09 Cluster: F8K7.11 protein; n=11; Eukaryota|Rep: F... 185 1e-45
UniRef50_A2E6V9 Cluster: ATPase, AAA family protein; n=2; Tricho... 185 1e-45
UniRef50_Q9UXF5 Cluster: Replication factor C small subunit; n=1... 185 1e-45
UniRef50_UPI0000DB75B4 Cluster: PREDICTED: similar to CG8142-PA;... 184 2e-45
UniRef50_Q5CVS5 Cluster: Replication factor C like AAA ATpase; n... 184 2e-45
UniRef50_P53016 Cluster: Replication factor C subunit 4; n=2; Ca... 184 2e-45
UniRef50_Q5UZE5 Cluster: Replication factor C small subunit; n=5... 182 1e-44
UniRef50_Q0UV64 Cluster: Putative uncharacterized protein; n=1; ... 181 2e-44
UniRef50_Q5UP47 Cluster: Putative replication factor C small sub... 178 2e-43
UniRef50_Q8QNA5 Cluster: EsV-1-182; n=1; Ectocarpus siliculosus ... 177 4e-43
UniRef50_Q4Q732 Cluster: Replication factor C, subunit 2, putati... 176 5e-43
UniRef50_Q8PVY4 Cluster: Replication factor C small subunit; n=1... 176 6e-43
UniRef50_UPI0000498FA9 Cluster: activator 1 subunit; n=1; Entamo... 175 8e-43
UniRef50_Q8SSI2 Cluster: DNA REPLICATION FACTOR C (ACTIVATOR 1) ... 173 6e-42
UniRef50_UPI0000499C0F Cluster: Activator 1 40 kDa subunit; n=1;... 172 1e-41
UniRef50_Q8WSL8 Cluster: Replication factor C subunit 4; n=6; Pl... 169 7e-41
UniRef50_P35250 Cluster: Replication factor C subunit 2; n=103; ... 169 7e-41
UniRef50_Q977Z9 Cluster: Replication factor C small subunit; n=4... 167 3e-40
UniRef50_Q4UIH2 Cluster: Replication factor C subunit (RPC2 homo... 166 7e-40
UniRef50_A7SA25 Cluster: Predicted protein; n=2; Nematostella ve... 165 9e-40
UniRef50_Q2NH89 Cluster: Replication factor C small subunit; n=2... 165 2e-39
UniRef50_Q5UQ72 Cluster: Putative replication factor C small sub... 165 2e-39
UniRef50_A7DR59 Cluster: Replication factor C; n=1; Candidatus N... 163 4e-39
UniRef50_Q9GR07 Cluster: Replication factor C subunit 2; n=6; Pl... 163 5e-39
UniRef50_Q7R657 Cluster: GLP_574_161256_160291; n=1; Giardia lam... 163 6e-39
UniRef50_A0EG83 Cluster: Chromosome undetermined scaffold_95, wh... 162 8e-39
UniRef50_A3ABV4 Cluster: Putative uncharacterized protein; n=1; ... 162 1e-38
UniRef50_Q86EA0 Cluster: Clone ZZD636 mRNA sequence; n=2; Bilate... 161 2e-38
UniRef50_Q7QWA3 Cluster: GLP_177_25642_24674; n=1; Giardia lambl... 160 4e-38
UniRef50_A0RYC0 Cluster: Replication factor C small subunit; n=1... 158 2e-37
UniRef50_Q8QN66 Cluster: EsV-1-224; n=1; Ectocarpus siliculosus ... 157 3e-37
UniRef50_Q7T2C9 Cluster: Rfc4 protein; n=34; Fungi/Metazoa group... 151 3e-35
UniRef50_Q8SQM0 Cluster: REPLICATION FACTOR C (ACTIVATOR 1) 37kD... 151 3e-35
UniRef50_Q7QUZ0 Cluster: GLP_61_35037_36092; n=1; Giardia lambli... 146 4e-34
UniRef50_O57852 Cluster: Replication factor C small subunit (RFC... 140 4e-32
UniRef50_A4I6D8 Cluster: Replication factor C, subunit 4, putati... 136 6e-31
UniRef50_Q5UQ47 Cluster: Putative replication factor C small sub... 134 3e-30
UniRef50_Q6WI74 Cluster: Gp44; n=1; Vibrio phage KVP40|Rep: Gp44... 125 1e-27
UniRef50_Q8QKY2 Cluster: EsV-1-87; n=1; Ectocarpus siliculosus v... 125 2e-27
UniRef50_A6R3U6 Cluster: Activator 1 37 kDa subunit; n=1; Ajello... 123 6e-27
UniRef50_Q8TZC4 Cluster: Replication factor C small subunit (RFC... 111 2e-23
UniRef50_Q5GQL5 Cluster: Sliding clamp loader gp44; n=5; root|Re... 107 2e-22
UniRef50_A3CUW4 Cluster: Replication factor C; n=2; Methanomicro... 107 4e-22
UniRef50_Q8SSG6 Cluster: DNA REPLICATION FACTOR (ACTIVATOR 1) 36... 104 3e-21
UniRef50_A3IWH2 Cluster: DNA polymerase III gamma and tau subuni... 102 1e-20
UniRef50_UPI0001554DFB Cluster: PREDICTED: similar to olfactory ... 101 3e-20
UniRef50_Q8TUC8 Cluster: Replication factor C subunit; n=4; Meth... 100 5e-20
UniRef50_Q4Q084 Cluster: Replication factor C, subunit 5, putati... 98 3e-19
UniRef50_Q98RV1 Cluster: Replication factor C 37 KD subunit; n=1... 97 4e-19
UniRef50_Q2FQR4 Cluster: Replication factor C large subunit; n=2... 97 5e-19
UniRef50_Q64AI6 Cluster: Replication factor C subunit; n=1; uncu... 96 1e-18
UniRef50_Q4TFR9 Cluster: Chromosome undetermined SCAF4252, whole... 95 2e-18
UniRef50_A5UMF4 Cluster: Replication factor C large subunit; n=2... 93 6e-18
UniRef50_Q8Q084 Cluster: Replication factor C large subunit; n=4... 93 1e-17
UniRef50_A0NIM4 Cluster: DNA-dependent DNA polymerase III, gamma... 92 2e-17
UniRef50_Q2FUA8 Cluster: Replication factor C subunit; n=1; Meth... 90 5e-17
UniRef50_A3CTR4 Cluster: Replication factor C large subunit; n=1... 90 5e-17
UniRef50_A2SRY4 Cluster: DNA polymerase III gamma/tau subunits-l... 90 7e-17
UniRef50_Q4UIQ4 Cluster: Replication factor C subunit, putative;... 89 1e-16
UniRef50_Q2RMH2 Cluster: DNA polymerase III, subunits gamma and ... 88 2e-16
UniRef50_A7CST5 Cluster: DNA polymerase III, subunits gamma and ... 87 5e-16
UniRef50_Q8DT16 Cluster: DNA polymerase III, gamma/tau subunit; ... 86 9e-16
UniRef50_Q03ZG9 Cluster: DNA polymerase III, gamma/tau subunit; ... 86 9e-16
UniRef50_Q8SRT8 Cluster: DNA REPLICATION FACTOR C SUBUNIT; n=1; ... 86 1e-15
UniRef50_A0B6D7 Cluster: Replication factor C large subunit; n=1... 86 1e-15
UniRef50_Q9V2G4 Cluster: Replication factor C small subunit (RFC... 85 2e-15
UniRef50_Q4A6Z5 Cluster: DNA polymerase III gamma and tau subuni... 85 3e-15
UniRef50_Q1Q394 Cluster: Similar to DNA polymerase III subunit g... 85 3e-15
UniRef50_A2BZ44 Cluster: DNA polymerase, gamma and tau subunits;... 85 3e-15
UniRef50_Q176Y6 Cluster: Replication factor C, 37kD-subunit, put... 84 4e-15
UniRef50_A1RWU6 Cluster: Replication factor C large subunit; n=1... 84 4e-15
UniRef50_A2SQR6 Cluster: Replication factor C large subunit; n=1... 84 4e-15
UniRef50_O67707 Cluster: DNA polymerase III gamma subunit; n=3; ... 84 5e-15
UniRef50_Q9QXI2 Cluster: Replication factor C subunit 2; n=8; Eu... 83 8e-15
UniRef50_Q2NH88 Cluster: Replication factor C large subunit; n=1... 83 1e-14
UniRef50_Q1ATA7 Cluster: DNA polymerase III, subunits gamma and ... 82 1e-14
UniRef50_Q7RNS4 Cluster: Drosophila melanogaster BcDNA.LD06837, ... 82 1e-14
UniRef50_A7HGU5 Cluster: DNA polymerase III, subunits gamma and ... 82 2e-14
UniRef50_P40938 Cluster: Replication factor C subunit 3; n=64; E... 82 2e-14
UniRef50_Q9WZF2 Cluster: DNA polymerase III, gamma and tau subun... 81 2e-14
UniRef50_Q7UQ66 Cluster: DNA polymerase III gamma and tau subuni... 81 2e-14
UniRef50_O64301 Cluster: DNA polymerase accessory protein 44; n=... 81 2e-14
UniRef50_A3ZPF5 Cluster: DNA polymerase III gamma and tau subuni... 81 4e-14
UniRef50_A3V6X7 Cluster: Putative uncharacterized protein; n=1; ... 81 4e-14
UniRef50_A2RNZ7 Cluster: DNA polymerase III subunits gamma / tau... 81 4e-14
UniRef50_Q6MH32 Cluster: DNA polymerase III gamma and tau subuni... 80 8e-14
UniRef50_A5FRM9 Cluster: DNA polymerase III, subunits gamma and ... 80 8e-14
UniRef50_A2E870 Cluster: Putative uncharacterized protein; n=1; ... 80 8e-14
UniRef50_O29072 Cluster: Replication factor C large subunit; n=1... 80 8e-14
UniRef50_Q8RDI6 Cluster: DNA polymerase III, gamma/tau subunits;... 79 1e-13
UniRef50_A6DLE8 Cluster: DNA polymerase III, gamma and tau subun... 79 1e-13
UniRef50_A6LMU3 Cluster: DNA polymerase III, subunits gamma and ... 79 2e-13
UniRef50_A3H683 Cluster: AAA ATPase, central region; n=1; Caldiv... 79 2e-13
UniRef50_Q2JLX3 Cluster: DNA polymerase III, subunits gamma and ... 78 2e-13
UniRef50_A4M5U6 Cluster: DNA polymerase III, subunits gamma and ... 78 2e-13
UniRef50_Q67TJ5 Cluster: DNA polymerase III gamma and tau subuni... 78 3e-13
UniRef50_A7HJR0 Cluster: DNA polymerase III, subunits gamma and ... 78 3e-13
UniRef50_Q9V2G3 Cluster: Replication factor C large subunit; n=4... 77 4e-13
UniRef50_Q7P6U1 Cluster: DNA polymerase III subunit gamma/tau; n... 77 5e-13
UniRef50_A0LM15 Cluster: DNA polymerase III, subunits gamma and ... 77 5e-13
UniRef50_Q56C06 Cluster: Gp44 clamp-loader subunit; n=1; Enterob... 77 7e-13
UniRef50_A2E9V5 Cluster: Differentiation specific element bindin... 77 7e-13
UniRef50_Q8G6Y0 Cluster: DNA polymerase III subunit gamma/tau; n... 76 9e-13
UniRef50_Q601S8 Cluster: DNA polymerase III gamma-tau subunits; ... 76 9e-13
UniRef50_Q9SN33 Cluster: Putative uncharacterized protein F28A21... 76 1e-12
UniRef50_Q4HGU7 Cluster: DNA polymerase III gamma and tau subuni... 75 2e-12
UniRef50_Q18U88 Cluster: DNA polymerase III, subunits gamma and ... 75 2e-12
UniRef50_A6DD60 Cluster: DNA polymerase III subunits gamma and t... 75 2e-12
UniRef50_A6CH16 Cluster: DNA polymerase III gamma and tau subuni... 75 2e-12
UniRef50_Q9FK71 Cluster: Similarity to DNA polymerase III; n=3; ... 75 2e-12
UniRef50_P09122 Cluster: DNA polymerase III subunit gamma/tau; n... 75 2e-12
UniRef50_Q7V9L4 Cluster: DNA polymerase III gamma/tau subunit; n... 75 3e-12
UniRef50_A6FVT5 Cluster: Replication factor C small subunit; n=1... 75 3e-12
UniRef50_Q8SR43 Cluster: DNA REPLICATION FACTOR C 38kDa SUBUNIT;... 75 3e-12
UniRef50_Q9RRS5 Cluster: DNA polymerase III, tau/gamma subunit; ... 74 4e-12
UniRef50_Q5L3X6 Cluster: DNA-directed DNA polymerase III gamma a... 74 4e-12
UniRef50_Q2LYB8 Cluster: DNA polymerase III subunit gamma/tau; n... 74 4e-12
UniRef50_A6QBX8 Cluster: DNA polymerase III, gamma/tau subunits;... 74 4e-12
UniRef50_A4RWV3 Cluster: Predicted protein; n=8; Viridiplantae|R... 56 5e-12
UniRef50_Q82X62 Cluster: DnaX; DNA polymerase III (Subunits tau ... 74 5e-12
UniRef50_Q7NK69 Cluster: DNA polymerase III gamma and tau subuni... 74 5e-12
UniRef50_P75177 Cluster: DNA polymerase III subunit gamma/tau; n... 74 5e-12
UniRef50_Q6F0D9 Cluster: DNA polymerase III gamma and tau subuni... 73 7e-12
UniRef50_A4CK17 Cluster: DNA polymerase III subunit gamma/tau; n... 73 7e-12
UniRef50_Q9YBS5 Cluster: Replication factor C large subunit; n=1... 73 7e-12
UniRef50_Q8DJU0 Cluster: DNA polymerase III gamma and tau subuni... 73 9e-12
UniRef50_Q6KIL7 Cluster: DNA polymerase III subunit gamma and ta... 73 9e-12
UniRef50_Q3A8S0 Cluster: Putative DNA polymerase III, gamma/tau ... 73 9e-12
UniRef50_Q8EUW0 Cluster: DNA polymerase III gamma-tau subunits; ... 73 1e-11
UniRef50_A5KSU9 Cluster: DNA polymerase III, subunits gamma and ... 73 1e-11
UniRef50_A3FQ95 Cluster: Replication factor C subunit 5, putativ... 73 1e-11
UniRef50_Q4FNB0 Cluster: DNA-directed DNA polymerase gamma/tau s... 72 2e-11
UniRef50_A6NU34 Cluster: Putative uncharacterized protein; n=1; ... 72 2e-11
UniRef50_Q58817 Cluster: Replication factor C small subunit (RFC... 72 2e-11
UniRef50_Q2RZH6 Cluster: DNA polymerase III, subunits gamma and ... 72 2e-11
UniRef50_Q2GDS0 Cluster: Putative DNA polymerase III, gamma/tau ... 72 2e-11
UniRef50_Q1FKE1 Cluster: DNA polymerase III, subunits gamma and ... 72 2e-11
UniRef50_Q58294 Cluster: Replication factor C large subunit; n=6... 72 2e-11
UniRef50_Q0B0W5 Cluster: DNA-directed DNA polymerase; n=1; Syntr... 71 3e-11
UniRef50_Q22W14 Cluster: Replication factor C subunit, putative;... 71 3e-11
UniRef50_Q5V1F7 Cluster: Replication factor C large subunit; n=5... 71 3e-11
UniRef50_Q5UQE8 Cluster: Putative replication factor C small sub... 71 4e-11
UniRef50_P60373 Cluster: Replication factor C large subunit; n=1... 71 4e-11
UniRef50_Q0C591 Cluster: DNA polymerase III, subunits gamma and ... 50 4e-11
UniRef50_A5IZC8 Cluster: DNA polymerase III subunit gamma and TA... 70 6e-11
UniRef50_A4XJ39 Cluster: DNA polymerase III, subunits gamma and ... 70 6e-11
UniRef50_A0M2F5 Cluster: DNA polymerase III subunit gamma/tau; n... 70 6e-11
UniRef50_Q8YMK1 Cluster: DNA polymerase III gamma and tau subuni... 70 8e-11
UniRef50_Q2STA6 Cluster: DNA polymerase III gamma-tau subunits; ... 70 8e-11
UniRef50_Q1EZ15 Cluster: DNA polymerase III, subunits gamma and ... 69 1e-10
UniRef50_A6GJ36 Cluster: DNA polymerase III, gamma and tau subun... 69 1e-10
UniRef50_Q8ZSE1 Cluster: DNA polymerase III gamma and tau subuni... 69 1e-10
UniRef50_Q74GZ9 Cluster: DNA polymerase III, gamma and tau subun... 69 1e-10
UniRef50_Q41AZ0 Cluster: DNA-directed DNA polymerase; n=1; Exigu... 69 1e-10
UniRef50_Q1K472 Cluster: DNA polymerase III, subunits gamma and ... 69 1e-10
UniRef50_A7GZC8 Cluster: Protein EbsC; n=13; Campylobacter|Rep: ... 69 1e-10
UniRef50_A7BAA1 Cluster: Putative uncharacterized protein; n=1; ... 69 2e-10
UniRef50_Q7QR65 Cluster: GLP_301_13398_14519; n=1; Giardia lambl... 69 2e-10
UniRef50_Q7M7T5 Cluster: DNA POLYMERASE III SUBUNITS GAMMA AND T... 68 2e-10
UniRef50_Q26BL4 Cluster: ATPase related to the helicase subunit ... 68 2e-10
UniRef50_A0RRQ8 Cluster: ATPase, AAA family; n=3; Campylobacter|... 68 2e-10
UniRef50_Q6RHU1 Cluster: Gp44 clamp loader subunit; n=2; T4-like... 68 2e-10
UniRef50_P38251 Cluster: Replication factor C subunit 5; n=12; S... 68 2e-10
UniRef50_Q1IQ74 Cluster: DNA polymerase III, subunits gamma and ... 68 3e-10
UniRef50_A6QCT9 Cluster: ATPase, AAA family; n=22; Epsilonproteo... 68 3e-10
UniRef50_Q74L01 Cluster: DNA polymerase III subunit gamma/tau; n... 67 4e-10
UniRef50_Q9PR58 Cluster: DNA polymerase III gamma-tau subunits; ... 66 8e-10
UniRef50_A3DHB9 Cluster: DNA polymerase III, subunits gamma and ... 66 8e-10
UniRef50_A2A0B1 Cluster: DNA polymerase III subunit gamma/tau; n... 66 8e-10
UniRef50_Q7NAN5 Cluster: DnaX; n=1; Mycoplasma gallisepticum|Rep... 66 1e-09
UniRef50_Q022F8 Cluster: DNA polymerase III, subunits gamma and ... 66 1e-09
UniRef50_UPI0000E87FCE Cluster: DNA-directed DNA polymerase; n=1... 65 2e-09
UniRef50_Q2GI84 Cluster: DNA polymerase III, subunits gamma and ... 65 2e-09
UniRef50_Q0IE22 Cluster: DNA polymerase III, subunits gamma and ... 65 2e-09
UniRef50_A6LPM5 Cluster: DNA polymerase III delta' subunit; n=1;... 65 2e-09
UniRef50_A1W8D6 Cluster: DNA polymerase III, subunits gamma and ... 65 2e-09
UniRef50_Q9PCH3 Cluster: DNA polymerase III subunit; n=12; Xanth... 65 2e-09
UniRef50_Q899U1 Cluster: DNA polymerase III subunits gamma and t... 65 2e-09
UniRef50_A1AWB5 Cluster: DNA polymerase III, subunits gamma and ... 65 2e-09
UniRef50_Q5UZL1 Cluster: Replication factor C small subunit; n=2... 65 2e-09
UniRef50_Q975D4 Cluster: Replication factor C large subunit; n=5... 65 2e-09
UniRef50_A2BL93 Cluster: Replication factor C large subunit; n=2... 65 2e-09
UniRef50_Q9PQU7 Cluster: Conserved hypothetical ATP/GTP-binding ... 64 3e-09
UniRef50_Q98RG0 Cluster: DNA POLYMERASE III SUBUNIT GAMMA AND TA... 64 3e-09
UniRef50_O25419 Cluster: DNA polymerase III gamma and tau subuni... 64 3e-09
UniRef50_A0CIK7 Cluster: Chromosome undetermined scaffold_19, wh... 64 3e-09
UniRef50_O83970 Cluster: DNA polymerase III, subunits gamma and ... 64 4e-09
UniRef50_A3EPW1 Cluster: Putative DNA polymerase III, gamma/tau ... 64 4e-09
UniRef50_A0L8F3 Cluster: DNA polymerase III, subunits gamma and ... 64 4e-09
UniRef50_O94697 Cluster: Replication factor C subunit 5; n=2; As... 64 4e-09
UniRef50_Q5P9F0 Cluster: DNA polymerase III gamma subunit; n=2; ... 64 5e-09
UniRef50_Q1GKB7 Cluster: DNA polymerase III subunits gamma and t... 64 5e-09
UniRef50_A6W567 Cluster: DNA polymerase III, subunits gamma and ... 64 5e-09
UniRef50_A3JQW8 Cluster: DNA polymerase III subunits gamma and t... 64 5e-09
UniRef50_A0GXK7 Cluster: DNA polymerase III, subunits gamma and ... 64 5e-09
UniRef50_UPI000049936A Cluster: Activator 1 140 kDa subunit; n=1... 63 7e-09
UniRef50_Q6MDZ7 Cluster: Probable DNA-directed DNA polymerase II... 63 7e-09
UniRef50_Q117S8 Cluster: DNA polymerase III, subunits gamma and ... 63 7e-09
UniRef50_A5UTH5 Cluster: DNA polymerase III, subunits gamma and ... 63 7e-09
UniRef50_Q7WMF3 Cluster: DNA polymerase III subunit Tau; n=4; Bo... 63 9e-09
UniRef50_Q6ABA1 Cluster: DNA polymerase III subunit gamma; n=2; ... 63 9e-09
UniRef50_Q9AIX4 Cluster: DNA polymerase III-like protein; n=2; W... 63 9e-09
UniRef50_Q18C99 Cluster: DNA polymerase III subunit gamma/tau; n... 63 9e-09
UniRef50_Q4MZF5 Cluster: Replication factor C large subunit, put... 63 9e-09
UniRef50_Q5FTB4 Cluster: DNA polymerase III subunit gamma/tau; n... 62 1e-08
UniRef50_O84338 Cluster: DNA Pol III Gamma and Tau; n=8; Chlamyd... 62 1e-08
UniRef50_Q83FL2 Cluster: DNA polymerase III gamma and tau subuni... 62 2e-08
UniRef50_Q4L3D4 Cluster: DNA polymerase III gamma and tau subuni... 62 2e-08
UniRef50_Q9M9R7 Cluster: F14L17.24 protein; n=2; Arabidopsis tha... 62 2e-08
UniRef50_UPI00006CAE51 Cluster: ATPase, AAA family protein; n=1;... 62 2e-08
UniRef50_Q7NXL6 Cluster: DNA polymerase subunits gamma and tau; ... 62 2e-08
UniRef50_A3ISF6 Cluster: DNA-directed DNA polymerase; n=3; Cyano... 62 2e-08
UniRef50_A1K419 Cluster: DNA polymerase III subunit Tau; n=2; Az... 62 2e-08
UniRef50_A1GG63 Cluster: DNA polymerase III, subunits gamma and ... 62 2e-08
UniRef50_A0JSD4 Cluster: DNA polymerase III, subunits gamma and ... 62 2e-08
UniRef50_Q0W3P4 Cluster: Replication factor C large subunit; n=1... 62 2e-08
UniRef50_Q927D7 Cluster: DnaX protein; n=17; Bacillales|Rep: Dna... 61 3e-08
UniRef50_Q73G99 Cluster: DNA polymerase III, gamma and tau subun... 61 3e-08
UniRef50_Q0ASK9 Cluster: DNA polymerase III, subunits gamma and ... 61 3e-08
UniRef50_A2Y6S3 Cluster: Putative uncharacterized protein; n=6; ... 61 3e-08
UniRef50_UPI000050FCE9 Cluster: COG2812: DNA polymerase III, gam... 61 4e-08
UniRef50_A6EHG2 Cluster: DNA polymerase III, tau and gamma subun... 61 4e-08
UniRef50_A2G4Z2 Cluster: Differentiation specific element bindin... 61 4e-08
UniRef50_Q7VRB7 Cluster: DNA polymerase III subunit gamma; n=2; ... 60 5e-08
UniRef50_Q1GV06 Cluster: DNA polymerase III, subunits gamma and ... 60 5e-08
UniRef50_A5P451 Cluster: DNA-directed DNA polymerase; n=1; Methy... 60 5e-08
UniRef50_A4BJR3 Cluster: DNA polymerase III subunits gamma and t... 60 5e-08
UniRef50_Q9SB72 Cluster: DNA polymerase III like protein; n=2; E... 60 5e-08
UniRef50_Q8TZC5 Cluster: Replication factor C large subunit; n=1... 60 5e-08
UniRef50_Q97M98 Cluster: DNA-polymerase III, gamma subunit; n=1;... 60 7e-08
UniRef50_Q8EY86 Cluster: DNA polymerase III subunit gamma; n=4; ... 60 7e-08
UniRef50_Q7MUS1 Cluster: DNA polymerase III, gamma and tau subun... 60 7e-08
UniRef50_Q0GL66 Cluster: DNA polymerase III, subunits gamma and ... 60 7e-08
UniRef50_A5Z8F9 Cluster: Putative uncharacterized protein; n=2; ... 60 7e-08
UniRef50_Q1N199 Cluster: DNA polymerase III subunits gamma and t... 60 9e-08
UniRef50_A4SWQ4 Cluster: DNA polymerase III, subunits gamma and ... 60 9e-08
UniRef50_Q899F8 Cluster: DNA polymerase III delta subunit; n=1; ... 59 1e-07
UniRef50_A3TI73 Cluster: DNA polymerase III subunits gamma and t... 59 1e-07
UniRef50_A3QF53 Cluster: DNA polymerase III, subunits gamma and ... 59 1e-07
UniRef50_Q54MH9 Cluster: Replication factor C subunit; n=1; Dict... 59 1e-07
UniRef50_Q4AHZ6 Cluster: DNA-directed DNA polymerase; n=1; Chlor... 59 2e-07
UniRef50_Q0SS35 Cluster: ATPase, AAA family; n=3; Clostridium|Re... 59 2e-07
UniRef50_Q0LFS9 Cluster: DNA polymerase III, subunits gamma and ... 59 2e-07
UniRef50_A6EX05 Cluster: DNA polymerase III subunits gamma and t... 59 2e-07
UniRef50_A5V2B2 Cluster: DNA polymerase III, subunits gamma and ... 59 2e-07
UniRef50_A5YSV5 Cluster: Replication factor C small subunit II; ... 59 2e-07
UniRef50_UPI0000E0E6B7 Cluster: putative DnaX, DNA polymerase II... 58 2e-07
UniRef50_Q9CNR3 Cluster: DnaX; n=2; Pasteurellaceae|Rep: DnaX - ... 58 2e-07
UniRef50_Q6MPI4 Cluster: ATPase, AAA family; n=1; Bdellovibrio b... 58 2e-07
UniRef50_Q2SIX1 Cluster: DNA polymerase III, gamma/tau subunit; ... 58 2e-07
UniRef50_A1U128 Cluster: DNA polymerase III, subunits gamma and ... 58 2e-07
UniRef50_Q2QW40 Cluster: ATPase, AAA family protein, expressed; ... 58 2e-07
UniRef50_O48696 Cluster: F3I6.23 protein; n=3; Arabidopsis thali... 58 2e-07
UniRef50_A1ISN1 Cluster: DNA polymerase III tau and gamma chains... 58 3e-07
UniRef50_Q6ANB4 Cluster: Related to DNA polymerase III, subunit ... 58 3e-07
UniRef50_Q6AGY6 Cluster: DNA polymerase III, gamma and tau subun... 58 3e-07
UniRef50_A6FTR6 Cluster: DNA-directed DNA polymerase gamma/tau s... 58 3e-07
UniRef50_A0UY99 Cluster: DNA polymerase III, subunits gamma and ... 58 3e-07
UniRef50_Q9WYX8 Cluster: UPF0189 protein TM_0508; n=4; Thermotog... 58 3e-07
UniRef50_Q661F8 Cluster: DNA polymerase III, subunits gamma and ... 57 5e-07
UniRef50_Q3IKN4 Cluster: Putative DnaX, DNA polymerase III, gamm... 57 5e-07
UniRef50_Q3AA20 Cluster: ATPase, AAA family; n=4; Clostridiales|... 57 5e-07
UniRef50_Q21L32 Cluster: DNA polymerase III, subunits gamma and ... 57 5e-07
UniRef50_A3YHQ6 Cluster: DNA polymerase III subunits gamma and t... 57 5e-07
UniRef50_A7AMJ0 Cluster: Putative uncharacterized protein; n=1; ... 57 5e-07
UniRef50_Q89LM6 Cluster: Bll4517 protein; n=11; Bradyrhizobiacea... 57 6e-07
UniRef50_Q74BH4 Cluster: ATPase, AAA family; n=2; Deltaproteobac... 57 6e-07
UniRef50_Q6NC57 Cluster: Possible DNA polymerase III tau subunit... 57 6e-07
UniRef50_Q6FAW7 Cluster: DNA polymerase III, tau and gamma subun... 57 6e-07
UniRef50_A6GQQ4 Cluster: AAA ATPase, central region; n=1; Limnob... 57 6e-07
UniRef50_A1HPS4 Cluster: DNA polymerase III, delta prime subunit... 57 6e-07
UniRef50_A0UX52 Cluster: DNA-directed DNA polymerase; n=1; Clost... 57 6e-07
UniRef50_P43746 Cluster: DNA polymerase III subunit gamma/tau; n... 57 6e-07
UniRef50_Q6MP27 Cluster: DNA polymerase III delta' subunit; n=1;... 56 8e-07
UniRef50_Q7CZ44 Cluster: AGR_C_2759p; n=6; Rhizobiaceae|Rep: AGR... 56 8e-07
UniRef50_A5D6B1 Cluster: DNA polymerase III, gamma/tau subunits;... 56 8e-07
UniRef50_A1S561 Cluster: DNA-directed DNA polymerase; n=1; Shewa... 56 8e-07
UniRef50_Q043K3 Cluster: Helicase subunit of the Holliday juncti... 56 1e-06
UniRef50_A7M2L2 Cluster: Putative uncharacterized protein; n=2; ... 56 1e-06
UniRef50_A1RIP8 Cluster: DNA polymerase III, subunits gamma and ... 56 1e-06
UniRef50_Q17LI6 Cluster: Replication factor C large subunit, put... 56 1e-06
UniRef50_UPI00015BB275 Cluster: replication factor C large subun... 56 1e-06
UniRef50_Q6YPV8 Cluster: DNA polymerase III, gamma/tau subunit; ... 56 1e-06
UniRef50_A3D5Q4 Cluster: DNA polymerase III, subunits gamma and ... 56 1e-06
UniRef50_A1SDH6 Cluster: DNA polymerase III, subunits gamma and ... 56 1e-06
UniRef50_Q8ZYK3 Cluster: Replication factor C large subunit; n=4... 56 1e-06
UniRef50_UPI0000D55FC7 Cluster: PREDICTED: similar to Activator ... 55 2e-06
UniRef50_Q8KCT6 Cluster: DNA polymerase III, gamma and tau subun... 55 2e-06
UniRef50_Q6G4V0 Cluster: DNA polymerase III subunit tau; n=6; Rh... 55 2e-06
UniRef50_Q63UU8 Cluster: DNA polymerase III subunit gamma; n=19;... 55 2e-06
UniRef50_Q609A7 Cluster: DNA polymerase III, gamma and tau subun... 55 2e-06
UniRef50_Q39FP4 Cluster: DNA-directed DNA polymerase; n=13; Burk... 55 2e-06
UniRef50_Q6NJY2 Cluster: DNA polymerase III subunit gamma/tau; n... 55 2e-06
UniRef50_Q47XQ9 Cluster: DNA polymerase III, gamma/tau subunit; ... 55 2e-06
UniRef50_Q1FL61 Cluster: DNA polymerase III, delta prime subunit... 55 2e-06
UniRef50_A0Q156 Cluster: ATPase, AAA family; n=1; Clostridium no... 55 2e-06
UniRef50_Q9ABG0 Cluster: DNA polymerase III, gamma and tau subun... 54 3e-06
UniRef50_A1V9U7 Cluster: DNA polymerase III, subunits gamma and ... 54 3e-06
UniRef50_A0EHK8 Cluster: Chromosome undetermined scaffold_97, wh... 47 4e-06
UniRef50_Q9RKL5 Cluster: DNA polymerase III subunit gamma; n=2; ... 54 4e-06
UniRef50_Q1Z5S3 Cluster: DNA polymerase III subunits gamma and t... 54 4e-06
UniRef50_Q1QAW7 Cluster: DNA polymerase III, subunits gamma and ... 54 4e-06
UniRef50_O31001 Cluster: DNA polymerase III holoenzyme tau subun... 54 4e-06
UniRef50_A3WNZ0 Cluster: DNA polymerase III, gamma/tau subunits;... 54 4e-06
UniRef50_Q8DB24 Cluster: DNA polymerase III, gamma/tau subunits;... 54 6e-06
UniRef50_Q6FZU9 Cluster: DNA polymerase III, delta prime subunit... 54 6e-06
UniRef50_Q5QWS2 Cluster: DNA polymerase III, gamma/tau subunits;... 54 6e-06
UniRef50_Q1F0S1 Cluster: DNA polymerase III delta prime subunit;... 54 6e-06
UniRef50_Q0HHZ2 Cluster: DNA polymerase III, subunits gamma and ... 54 6e-06
UniRef50_Q0EXX3 Cluster: DNA polymerase III subunits gamma and t... 54 6e-06
UniRef50_A7HD56 Cluster: DNA polymerase III, delta prime subunit... 54 6e-06
UniRef50_A5WFF8 Cluster: DNA polymerase III, subunits gamma and ... 54 6e-06
UniRef50_A4E9Y5 Cluster: Putative uncharacterized protein; n=1; ... 54 6e-06
UniRef50_A0NSR3 Cluster: DNA polymerase III subunit delta'; n=1;... 54 6e-06
UniRef50_Q6CD04 Cluster: Similar to ca|CA5054|IPF3704 Candida al... 54 6e-06
UniRef50_UPI0000499B2D Cluster: AAA family ATPase; n=1; Entamoeb... 53 8e-06
UniRef50_Q9KT51 Cluster: DNA polymerase III, subunits gamma and ... 53 8e-06
UniRef50_Q8XHN4 Cluster: DNA polymerase III delta' subunit; n=3;... 53 8e-06
UniRef50_Q8A7B5 Cluster: DNA polymerase III subunit gamma/tau; n... 53 8e-06
UniRef50_Q81W10 Cluster: DNA polymerase III, delta prime subunit... 53 8e-06
UniRef50_Q1ZGI5 Cluster: DNA polymerase III subunits gamma and t... 53 8e-06
UniRef50_A6FN73 Cluster: Putative uncharacterized protein; n=1; ... 53 8e-06
UniRef50_A4C5P9 Cluster: Putative DnaX, DNA polymerase III, gamm... 53 8e-06
UniRef50_Q12LL5 Cluster: DNA polymerase III, subunits gamma and ... 53 1e-05
UniRef50_A5EY35 Cluster: DNA polymerase III, subunits gamma and ... 53 1e-05
UniRef50_A0Z9H0 Cluster: DNA polymerase III subunits gamma and t... 53 1e-05
UniRef50_Q5CPV9 Cluster: DNA replication repC1, AAA+ ATpase with... 53 1e-05
UniRef50_Q8EFG0 Cluster: DNA polymerase III, gamma and tau subun... 52 1e-05
UniRef50_Q8D230 Cluster: DnaX protein; n=1; Wigglesworthia gloss... 52 1e-05
UniRef50_Q67LR0 Cluster: ATP/GTP-binding domain protein; n=21; B... 52 1e-05
UniRef50_Q3SLE5 Cluster: DNA polymerase subunits gamma and tau; ... 52 1e-05
UniRef50_A7HXT6 Cluster: ATPase involved in DNA replication; n=5... 52 1e-05
UniRef50_A3VPV6 Cluster: DNA polymerase III subunits gamma and t... 52 1e-05
UniRef50_Q9GQW6 Cluster: Replication factor C subunit 1; n=6; Pl... 52 1e-05
UniRef50_A6VYC4 Cluster: DNA polymerase III, subunits gamma and ... 52 2e-05
UniRef50_A0KY06 Cluster: DNA polymerase III, subunits gamma and ... 52 2e-05
UniRef50_Q8K983 Cluster: DNA polymerase III subunit gamma; n=4; ... 52 2e-05
UniRef50_Q8G0U2 Cluster: DNA polymerase III, delta prime subunit... 52 2e-05
UniRef50_Q5FKX4 Cluster: Chromosomal segregation helicase; n=113... 52 2e-05
UniRef50_Q3A5K5 Cluster: ATPase, AAA family; n=5; Desulfuromonad... 52 2e-05
UniRef50_P63976 Cluster: DNA polymerase III subunit gamma/tau; n... 51 3e-05
UniRef50_Q1GTQ0 Cluster: DNA-directed DNA polymerase; n=1; Sphin... 51 4e-05
UniRef50_A5WC21 Cluster: AAA ATPase, central domain protein; n=3... 51 4e-05
UniRef50_Q4P896 Cluster: Putative uncharacterized protein; n=1; ... 51 4e-05
UniRef50_Q896F9 Cluster: ATPase associated with chromosome archi... 50 5e-05
UniRef50_A6BZZ4 Cluster: DNA polymerase III, tau/gamma subunit; ... 50 5e-05
UniRef50_Q10NN1 Cluster: ATPase, AAA family protein, expressed; ... 50 5e-05
UniRef50_A2FVE1 Cluster: ATPase, AAA family protein; n=2; Tricho... 50 5e-05
UniRef50_A0CPS3 Cluster: Chromosome undetermined scaffold_23, wh... 50 5e-05
UniRef50_A0YC05 Cluster: DNA polymerase III subunits gamma and t... 50 7e-05
UniRef50_A7R600 Cluster: Chromosome undetermined scaffold_1105, ... 50 7e-05
UniRef50_A6MVQ4 Cluster: DNA polymerase III; n=1; Rhodomonas sal... 50 7e-05
UniRef50_A2QMM8 Cluster: Contig An07c0070, complete genome; n=2;... 50 7e-05
UniRef50_Q5FK52 Cluster: Chromosome segregation helicase; n=3; L... 50 9e-05
UniRef50_Q1UAA1 Cluster: DNA polymerase III delta prime subunit;... 50 9e-05
UniRef50_A4B0N9 Cluster: DNA polymerase III subunits gamma and t... 50 9e-05
UniRef50_Q97BC2 Cluster: Replication factor C large subunit; n=2... 50 9e-05
UniRef50_Q7SA49 Cluster: Putative uncharacterized protein NCU073... 48 1e-04
UniRef50_Q88WS5 Cluster: Chromosome segregation helicase; n=31; ... 49 1e-04
UniRef50_Q4FLY1 Cluster: Probable DNA polymerase III; n=2; Candi... 49 1e-04
UniRef50_Q2JGD4 Cluster: DNA polymerase III, subunits gamma and ... 49 1e-04
UniRef50_A1VDA3 Cluster: AAA ATPase, central domain protein; n=4... 49 1e-04
UniRef50_Q6L0P4 Cluster: Replication factor C large subunit; n=1... 49 1e-04
UniRef50_UPI0000DB6BAC Cluster: PREDICTED: similar to cutlet CG3... 49 2e-04
UniRef50_Q15RT3 Cluster: DNA polymerase III, subunits gamma and ... 49 2e-04
UniRef50_A1I9Q5 Cluster: DNA-directed DNA polymerase; n=1; Candi... 49 2e-04
UniRef50_A2X8Q4 Cluster: Putative uncharacterized protein; n=2; ... 49 2e-04
UniRef50_A7D2R8 Cluster: AAA ATPase, central domain protein; n=1... 49 2e-04
UniRef50_P37540 Cluster: DNA polymerase III subunit delta'; n=8;... 49 2e-04
UniRef50_Q7NIS3 Cluster: Glr2109 protein; n=13; Bacteria|Rep: Gl... 48 2e-04
UniRef50_A4GJ98 Cluster: DNA polymerase III subunits gamma/tau; ... 48 2e-04
UniRef50_A4B798 Cluster: DNA polymerase III subunit delta; n=1; ... 48 2e-04
UniRef50_UPI0000499373 Cluster: activator 1 subunit; n=2; Entamo... 48 3e-04
UniRef50_Q830L8 Cluster: DNA polymerase III, delta prime subunit... 48 3e-04
UniRef50_Q5GRZ7 Cluster: ATPase involved in DNA replication, Hol... 48 3e-04
UniRef50_Q2GE30 Cluster: Putative uncharacterized protein; n=1; ... 48 3e-04
UniRef50_A5IXK5 Cluster: ATPase, AAA family; n=1; Mycoplasma aga... 48 3e-04
UniRef50_A4SMN2 Cluster: DNA polymerase III, subunits gamma and ... 48 3e-04
UniRef50_P42425 Cluster: ATP-dependent protease La homolog; n=46... 48 3e-04
UniRef50_Q1YNM8 Cluster: DNA polymerase III, delta prime subunit... 48 4e-04
UniRef50_Q1MPV7 Cluster: DNA polymerase III, gamma/tau subunits;... 48 4e-04
UniRef50_Q11HZ8 Cluster: DNA polymerase III, delta prime subunit... 48 4e-04
UniRef50_Q5KCB2 Cluster: Sister chromatid cohesion-related prote... 48 4e-04
UniRef50_Q3SIN0 Cluster: DNA polymerase III delta prime subunit;... 47 5e-04
UniRef50_Q15U04 Cluster: DNA-directed DNA polymerase; n=1; Pseud... 47 5e-04
UniRef50_A3VTZ3 Cluster: DNA polymerase III, delta prime subunit... 47 5e-04
UniRef50_A5DKE6 Cluster: Putative uncharacterized protein; n=1; ... 47 5e-04
UniRef50_UPI00015B6046 Cluster: PREDICTED: similar to werner hel... 47 7e-04
UniRef50_UPI000058605A Cluster: PREDICTED: similar to replicatio... 47 7e-04
UniRef50_Q83DN8 Cluster: DNA polymerase III, gamma and tau subun... 47 7e-04
UniRef50_Q7NRQ8 Cluster: DNA-directed DNA polymerase III, delta ... 47 7e-04
UniRef50_Q7R1M6 Cluster: GLP_28_54688_52016; n=1; Giardia lambli... 47 7e-04
UniRef50_P35251 Cluster: Replication factor C subunit 1; n=56; E... 47 7e-04
UniRef50_Q92FA1 Cluster: Lin0205 protein; n=13; Listeria|Rep: Li... 46 9e-04
UniRef50_Q87N27 Cluster: DNA polymerase III, delta prime subunit... 46 9e-04
UniRef50_Q5SH70 Cluster: DNA polymerase III delta prime subunit;... 46 9e-04
UniRef50_A2SMM1 Cluster: AAA+ class-like ATPase; n=1; Methylibiu... 46 9e-04
UniRef50_A6R2J2 Cluster: Predicted protein; n=1; Ajellomyces cap... 46 9e-04
UniRef50_P35600 Cluster: Replication factor C subunit 1; n=3; Di... 46 9e-04
UniRef50_UPI0000DB7733 Cluster: PREDICTED: similar to Werner hel... 46 0.001
UniRef50_Q3AG11 Cluster: Putative DNA polymerase III, delta prim... 46 0.001
UniRef50_O67486 Cluster: Putative uncharacterized protein; n=1; ... 46 0.001
UniRef50_Q3F084 Cluster: DNA polymerase III subunit gamma/tau; n... 46 0.001
UniRef50_Q3CFZ5 Cluster: AAA ATPase, central region; n=3; Bacter... 46 0.001
UniRef50_Q1NDV9 Cluster: DNA polymerase III delta prime subunit;... 46 0.001
UniRef50_Q1JXH0 Cluster: DNA polymerase III, delta prime subunit... 46 0.001
UniRef50_A5ADM6 Cluster: Putative uncharacterized protein; n=1; ... 46 0.001
UniRef50_A0RY55 Cluster: Replication factor C/ATPase involved in... 46 0.001
UniRef50_P40151 Cluster: DNA-dependent ATPase MGS1; n=6; Sacchar... 46 0.001
UniRef50_Q8RGJ6 Cluster: ATPase associated with chromosome archi... 46 0.002
UniRef50_Q1D8K6 Cluster: DNA polymerase III, delta' subunit; n=2... 46 0.002
UniRef50_Q0BT78 Cluster: DNA polymerase III, delta' subunit; n=2... 46 0.002
UniRef50_A5UZV8 Cluster: AAA ATPase, central domain protein; n=1... 46 0.002
UniRef50_A5KMD2 Cluster: Putative uncharacterized protein; n=3; ... 46 0.002
UniRef50_A5IBP2 Cluster: DNA polymerase III, delta prime subunit... 46 0.002
UniRef50_A5CF91 Cluster: DNA polymerase III gamma and tau chains... 46 0.002
UniRef50_Q3LVV8 Cluster: DNA replication factor C; n=1; Bigelowi... 46 0.002
UniRef50_Q2U8Q6 Cluster: ATPase related to the helicase subunit ... 46 0.002
UniRef50_Q9RMF0 Cluster: DNA polymerase III subunits tau and gam... 45 0.002
UniRef50_Q0G2K8 Cluster: Putative uncharacterized protein; n=1; ... 45 0.002
UniRef50_Q01F52 Cluster: Replication factor C 110 kDa subunit; n... 45 0.002
UniRef50_Q9P5S3 Cluster: Related to MSP1 protein; n=1; Neurospor... 45 0.002
UniRef50_Q75DK2 Cluster: ABR019Cp; n=1; Eremothecium gossypii|Re... 45 0.002
UniRef50_A5DW03 Cluster: Putative uncharacterized protein; n=1; ... 45 0.002
UniRef50_P49956 Cluster: Chromosome transmission fidelity protei... 45 0.002
UniRef50_Q5E417 Cluster: DNA polymerase III, delta' subunit; n=1... 45 0.003
UniRef50_Q84FP3 Cluster: DNA polymerase III gamma and tau subuni... 45 0.003
UniRef50_Q1YTB0 Cluster: DNA polymerase III subunits gamma and t... 45 0.003
UniRef50_A5UEZ6 Cluster: Predicted serine/threonine protein phos... 45 0.003
UniRef50_A5NZD9 Cluster: DNA-directed DNA polymerase; n=2; Alpha... 45 0.003
UniRef50_A4XHH7 Cluster: DNA-directed DNA polymerase; n=1; Caldi... 45 0.003
UniRef50_Q6C7Z4 Cluster: Similar to sp|P49956 Saccharomyces cere... 45 0.003
UniRef50_A7EJ31 Cluster: Putative uncharacterized protein; n=1; ... 45 0.003
UniRef50_A6SJK5 Cluster: Putative uncharacterized protein; n=1; ... 45 0.003
UniRef50_A6SIK6 Cluster: Putative uncharacterized protein; n=1; ... 45 0.003
UniRef50_Q8QNA1 Cluster: EsV-1-187; n=1; Ectocarpus siliculosus ... 44 0.003
UniRef50_Q74AW9 Cluster: DNA polymerase III, delta prime subunit... 44 0.003
UniRef50_Q0FAY2 Cluster: DNA polymerase III subunit delta; n=1; ... 44 0.003
UniRef50_Q2GP42 Cluster: Putative uncharacterized protein; n=1; ... 44 0.003
UniRef50_A3LTW2 Cluster: Replication factor ATPase; n=1; Pichia ... 44 0.003
UniRef50_UPI0000D56D44 Cluster: PREDICTED: similar to CG33122-PA... 44 0.005
UniRef50_Q9KQI3 Cluster: DNA polymerase III, delta prime subunit... 44 0.005
UniRef50_Q6D7Z9 Cluster: DNA polymerase III subunit tau; n=1; Pe... 44 0.005
UniRef50_P73507 Cluster: DNA polymerase III subunit; n=1; Synech... 44 0.005
UniRef50_A6LWH4 Cluster: Putative uncharacterized protein; n=1; ... 44 0.005
UniRef50_A3WC72 Cluster: DNA polymerase III delta prime subunit;... 44 0.005
UniRef50_Q96S08 Cluster: Protein CTF18 homolog; n=22; cellular o... 44 0.005
UniRef50_Q6BUL9 Cluster: Similarities with CA0979|IPF19713 Candi... 44 0.005
UniRef50_A7E9C6 Cluster: Putative uncharacterized protein; n=1; ... 44 0.005
UniRef50_Q97FT8 Cluster: Lon-like ATP-dependent protease; n=1; C... 44 0.006
UniRef50_Q6QN33 Cluster: AAA type ATPase; n=6; Mollicutes|Rep: A... 44 0.006
UniRef50_Q1AUM0 Cluster: DNA polymerase III, delta prime subunit... 44 0.006
UniRef50_Q181E8 Cluster: Putative DNA polymerase III, delta' sub... 44 0.006
UniRef50_A6PRD7 Cluster: AAA ATPase, central domain protein; n=4... 44 0.006
UniRef50_A6LJD0 Cluster: AAA ATPase, central domain protein; n=2... 44 0.006
UniRef50_A5UZ90 Cluster: DNA polymerase III, delta prime subunit... 44 0.006
UniRef50_Q1DX12 Cluster: Putative uncharacterized protein; n=1; ... 44 0.006
UniRef50_A2QBY4 Cluster: Contig An02c0010, complete genome; n=8;... 44 0.006
UniRef50_A5K9Q8 Cluster: Replication factor c, putative; n=1; Pl... 39 0.007
UniRef50_Q6MH16 Cluster: ATP-dependent protease LA; n=5; Proteob... 43 0.008
UniRef50_Q67JB2 Cluster: DNA polymerase III delta' subunit; n=1;... 43 0.008
UniRef50_A5GNS9 Cluster: ATPase related to the helicase subunit ... 43 0.008
UniRef50_A1UQM4 Cluster: AAA ATPase, central domain protein; n=2... 43 0.008
UniRef50_A1A0Y3 Cluster: Putative uncharacterized protein; n=2; ... 43 0.008
UniRef50_A0M6J3 Cluster: DNA polymerase III subunit delta'; n=14... 43 0.008
UniRef50_A7PUS7 Cluster: Chromosome chr4 scaffold_32, whole geno... 43 0.008
UniRef50_Q6CV97 Cluster: Kluyveromyces lactis strain NRRL Y-1140... 43 0.008
UniRef50_Q5K9N8 Cluster: Purine nucleotide binding protein, puta... 43 0.008
UniRef50_Q1DWQ3 Cluster: Putative uncharacterized protein; n=1; ... 43 0.008
UniRef50_Q0U4C8 Cluster: Putative uncharacterized protein; n=1; ... 43 0.008
UniRef50_Q5NNJ5 Cluster: DNA polymerase III delta prime subunit;... 43 0.011
UniRef50_Q2J818 Cluster: AAA ATPase, central region; n=5; Actino... 43 0.011
UniRef50_Q2BG76 Cluster: DNA polymerase III subunit delta; n=1; ... 43 0.011
UniRef50_Q28SW9 Cluster: DNA-directed DNA polymerase; n=25; Rhod... 43 0.011
UniRef50_Q1QX48 Cluster: DNA polymerase III, delta prime subunit... 43 0.011
UniRef50_Q4DDA7 Cluster: Putative uncharacterized protein; n=2; ... 43 0.011
UniRef50_A2DH92 Cluster: Transcription factor, putative; n=1; Tr... 43 0.011
UniRef50_Q7S2N1 Cluster: Putative uncharacterized protein NCU093... 43 0.011
UniRef50_UPI0000DB70D6 Cluster: PREDICTED: similar to Activator ... 42 0.014
UniRef50_UPI0000499E26 Cluster: AAA family ATPase; n=1; Entamoeb... 42 0.014
>UniRef50_P40937 Cluster: Replication factor C subunit 5; n=51;
Eukaryota|Rep: Replication factor C subunit 5 - Homo
sapiens (Human)
Length = 340
Score = 302 bits (742), Expect = 6e-81
Identities = 141/193 (73%), Positives = 164/193 (84%)
Frame = +1
Query: 235 VEKYRPKRLDDLVSHDDIIKTINQFMKENQLPHLLFYGPPGTGKTSTILACAKQMYTPQQ 414
VEKYRP+ L+DL+SH DI+ TI +F+ E++LPHLL YGPPGTGKTSTILACAKQ+Y ++
Sbjct: 23 VEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKE 82
Query: 415 FSSMVLELNASDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRII 594
F SMVLELNASDDRGI I+RG ILSFASTRTIFK G KL+ILDEADAMT DAQNALRR+I
Sbjct: 83 FGSMVLELNASDDRGIDIIRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVI 142
Query: 595 EKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGM 774
EK+TEN RFC+ICNYL KIIPALQSRCTRFRF PL + +VPRL+ +V E V +SE GM
Sbjct: 143 EKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDGM 202
Query: 775 KALLTWSGGDMXK 813
KAL+T S GDM +
Sbjct: 203 KALVTLSSGDMRR 215
>UniRef50_P34429 Cluster: Putative replication factor C subunit 5;
n=2; Caenorhabditis|Rep: Putative replication factor C
subunit 5 - Caenorhabditis elegans
Length = 368
Score = 267 bits (654), Expect = 3e-70
Identities = 133/213 (62%), Positives = 161/213 (75%), Gaps = 9/213 (4%)
Frame = +1
Query: 205 TTIKTLFLRRVEKYRPKRLDDLVSHDDIIKTINQFMKENQLPHLLFYGPPGTGKTSTILA 384
TT L VEKYRP +LD+LV+H+ I+KT+ +F++ LPHLLFYGPPGTGKT+T+LA
Sbjct: 22 TTTTASNLPWVEKYRPSKLDELVAHEQIVKTLTKFIENRTLPHLLFYGPPGTGKTTTVLA 81
Query: 385 CAKQMYTPQQFSSMVLELNASDDRGIGIVRGQILSFASTR------TIFKAGP---KLII 537
A+QMY+P + +SMVLELNASD+RGI +VR I++FA T+ T G KL+I
Sbjct: 82 AARQMYSPTKMASMVLELNASDERGIDVVRNTIVNFAQTKGLQAFSTSSNTGTVPFKLVI 141
Query: 538 LDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIV 717
LDEADAMT DAQNALRR+IEKYT+NVRFCIICNYL I+PA+QSRCTRFRFAPL Q IV
Sbjct: 142 LDEADAMTKDAQNALRRVIEKYTDNVRFCIICNYLASIVPAIQSRCTRFRFAPLDQKLIV 201
Query: 718 PRLQEIVTTEGVKMSEGGMKALLTWSGGDMXKV 816
PRL+ IV TE +KM+ G ALL S GDM V
Sbjct: 202 PRLEYIVETEQLKMTPDGKDALLIVSKGDMRTV 234
>UniRef50_P38629 Cluster: Replication factor C subunit 3; n=15;
Dikarya|Rep: Replication factor C subunit 3 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 340
Score = 247 bits (604), Expect = 3e-64
Identities = 117/194 (60%), Positives = 149/194 (76%)
Frame = +1
Query: 235 VEKYRPKRLDDLVSHDDIIKTINQFMKENQLPHLLFYGPPGTGKTSTILACAKQMYTPQQ 414
VEKYRP+ LD++ +++I T+ +F+ E +LPHLLFYGPPGTGKTSTI+A A+++Y +
Sbjct: 16 VEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYG-KN 74
Query: 415 FSSMVLELNASDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRII 594
+S+MVLELNASDDRGI +VR QI FASTR IF G KLIILDEADAMTN AQNALRR+I
Sbjct: 75 YSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVI 134
Query: 595 EKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGM 774
E+YT+N RFC++ NY K+ PAL SRCTRFRF PL Q+ I R+ ++ E +K+S
Sbjct: 135 ERYTKNTRFCVLANYAHKLTPALLSRCTRFRFQPLPQEAIERRIANVLVHEKLKLSPNAE 194
Query: 775 KALLTWSGGDMXKV 816
KAL+ S GDM +V
Sbjct: 195 KALIELSNGDMRRV 208
>UniRef50_Q5K796 Cluster: DNA replication factor, putative; n=5;
Fungi/Metazoa group|Rep: DNA replication factor,
putative - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 373
Score = 246 bits (601), Expect = 7e-64
Identities = 114/193 (59%), Positives = 149/193 (77%)
Frame = +1
Query: 235 VEKYRPKRLDDLVSHDDIIKTINQFMKENQLPHLLFYGPPGTGKTSTILACAKQMYTPQQ 414
VEKYRP LDD+VSH DI TI +F++ +LPHLL YGPPGTGKTST+LA A+++Y P
Sbjct: 57 VEKYRPVSLDDVVSHKDITSTIEKFIEAGRLPHLLLYGPPGTGKTSTVLALARRLYGPA- 115
Query: 415 FSSMVLELNASDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRII 594
+ +LELNASDDRGI +VR QI +FA T+ +F G KL+ILDEAD MT AQ+ALRR+I
Sbjct: 116 YRKHILELNASDDRGIDVVREQIKNFAMTKVLFSKGFKLVILDEADMMTQAAQSALRRVI 175
Query: 595 EKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGM 774
E++T+NVRFCI+CNY+ KI PA+QSRCTRFRF+PL + +I ++ E+V EGV +++ G
Sbjct: 176 EQHTKNVRFCILCNYVNKITPAIQSRCTRFRFSPLPEKEIQVKVDEVVQKEGVNLTDDGR 235
Query: 775 KALLTWSGGDMXK 813
A+L S GDM +
Sbjct: 236 DAILKLSRGDMRR 248
>UniRef50_Q9GR09 Cluster: Replication factor C3; n=9;
Aconoidasida|Rep: Replication factor C3 - Plasmodium
falciparum
Length = 344
Score = 230 bits (562), Expect = 4e-59
Identities = 109/198 (55%), Positives = 149/198 (75%), Gaps = 4/198 (2%)
Frame = +1
Query: 235 VEKYRPKRLDDLVSHDDIIKTINQFMKENQLPHLLFYGPPGTGKTSTILACAKQMYTPQQ 414
VEKYRP L+D++SH+ +I TI +F+++ +LPHLL +GPPGTGKTSTILA K++Y ++
Sbjct: 16 VEKYRPNVLNDIISHEQVISTIKRFVQKGELPHLLLHGPPGTGKTSTILAVCKELYGDKR 75
Query: 415 FSSMVLELNASDDRGIGIVRGQILSFASTR----TIFKAGPKLIILDEADAMTNDAQNAL 582
SS VLELNASDDRGI ++R QI +FA ++ T K KLIILDEAD MT AQNA+
Sbjct: 76 -SSFVLELNASDDRGINVIRDQIKTFAESKNHYTTCEKTTLKLIILDEADHMTYPAQNAM 134
Query: 583 RRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMS 762
RRI+E Y +NVRFC++CNY+ KI PA+QSRCT FRFAPLK++ + + +I +E V ++
Sbjct: 135 RRIMENYAKNVRFCLLCNYVNKITPAIQSRCTAFRFAPLKKEYMKNKALDIAKSENVNLT 194
Query: 763 EGGMKALLTWSGGDMXKV 816
EGG+ +L+ GDM ++
Sbjct: 195 EGGIDSLIRVGHGDMRRI 212
>UniRef50_A4IBL6 Cluster: Replication factor C, subunit 3, putative;
n=6; Trypanosomatidae|Rep: Replication factor C, subunit
3, putative - Leishmania infantum
Length = 364
Score = 228 bits (557), Expect = 1e-58
Identities = 113/209 (54%), Positives = 144/209 (68%), Gaps = 16/209 (7%)
Frame = +1
Query: 235 VEKYRPKRLDDLVSHDDIIKTINQFMKENQLPHLLFYGPPGTGKTSTILACAKQMYTPQQ 414
VEKYRP L+ +V+H+DI+ T+ M +PHLL YGPPGTGKT+TI ACA +Y +
Sbjct: 20 VEKYRPSTLESVVAHEDILSTLRHLMDSGNMPHLLLYGPPGTGKTTTIKACAYYLYGKDR 79
Query: 415 FSSMVLELNASDDRGIGIVRGQILSFASTRTIFK------------AGP----KLIILDE 546
+ VLE+NASDDRGI +VR Q FAST +IF GP KL+ILDE
Sbjct: 80 VRANVLEMNASDDRGIDVVRQQTREFASTSSIFSMMGSGSSTGGGSGGPAAKFKLVILDE 139
Query: 547 ADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRL 726
AD M++DAQ ALRR+IEKYT NVRFCI+CN++ KIIPALQSRCTRFRFAP+K+ ++PRL
Sbjct: 140 ADQMSHDAQAALRRVIEKYTRNVRFCILCNHINKIIPALQSRCTRFRFAPVKKSAMMPRL 199
Query: 727 QEIVTTEGVKMSEGGMKALLTWSGGDMXK 813
+ + EGVK + G+ A S GD+ +
Sbjct: 200 RFVAEQEGVKYTTDGLAAAFRLSHGDLRR 228
>UniRef50_Q2UJ68 Cluster: Replication factor C; n=15;
Pezizomycotina|Rep: Replication factor C - Aspergillus
oryzae
Length = 398
Score = 226 bits (553), Expect = 4e-58
Identities = 117/205 (57%), Positives = 141/205 (68%), Gaps = 12/205 (5%)
Frame = +1
Query: 235 VEKYRPKRLDDLVSHDDIIKTINQFMKENQLPHLLFYGPPGTGKTSTILACAKQMYTPQQ 414
VEKYRP LDD+ H DI+ TIN+F+ N+LPHLL YGPPGTGKTSTILA A+++Y +
Sbjct: 46 VEKYRPNTLDDVSGHQDILATINRFVDANRLPHLLLYGPPGTGKTSTILALARRIYGSKN 105
Query: 415 FSSMVLELNASDDRGIGIVRGQILSFASTRTIFKAGP------------KLIILDEADAM 558
MVLELNASDDRGI +VR QI +FAST+ IF P KLIILDEADAM
Sbjct: 106 MRQMVLELNASDDRGIDVVREQIKTFASTKQIFSMAPQPTSGGSSLASYKLIILDEADAM 165
Query: 559 TNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIV 738
T AQ ALRRI+EKYT N RFCII NY K+ PAL SRCTRFRF+PLK+ I + ++
Sbjct: 166 TATAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEQDIRSLVDLVI 225
Query: 739 TTEGVKMSEGGMKALLTWSGGDMXK 813
E VK+ + +L+ S GDM +
Sbjct: 226 EKEEVKIQPEAVDSLVKLSKGDMRR 250
>UniRef50_Q01F45 Cluster: Rfc5 replication factor C subunit 5
(36kDa), probable; n=2; Ostreococcus|Rep: Rfc5
replication factor C subunit 5 (36kDa), probable -
Ostreococcus tauri
Length = 341
Score = 221 bits (539), Expect = 2e-56
Identities = 103/192 (53%), Positives = 140/192 (72%)
Frame = +1
Query: 238 EKYRPKRLDDLVSHDDIIKTINQFMKENQLPHLLFYGPPGTGKTSTILACAKQMYTPQQF 417
EKYRP L ++V+H+ II I +F +LPHLLF+GPPGTGKTST+LA +++Y
Sbjct: 19 EKYRPLNLSEVVAHETIIDVIRKFAANGRLPHLLFHGPPGTGKTSTVLALTRELYESNH- 77
Query: 418 SSMVLELNASDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIE 597
S+MVLELNASD RGI IVR +I SFAST F + KL+I+DE D++T DAQ ALRRI+E
Sbjct: 78 SNMVLELNASDSRGINIVRDEIQSFASTARPFSSAFKLVIMDECDSLTKDAQFALRRIME 137
Query: 598 KYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMK 777
KY ++ RFC+ICNY KIIPA+QSRCT+FRFAP+ + ++ RL+ +V +E V++S ++
Sbjct: 138 KYAQHTRFCLICNYASKIIPAIQSRCTKFRFAPVPAEAMLQRLRHVVCSERVQISGASLQ 197
Query: 778 ALLTWSGGDMXK 813
+ GDM +
Sbjct: 198 TIQRLGEGDMRR 209
>UniRef50_A2DS36 Cluster: ATPase, AAA family protein; n=1;
Trichomonas vaginalis G3|Rep: ATPase, AAA family protein
- Trichomonas vaginalis G3
Length = 325
Score = 218 bits (533), Expect = 1e-55
Identities = 109/193 (56%), Positives = 138/193 (71%)
Frame = +1
Query: 235 VEKYRPKRLDDLVSHDDIIKTINQFMKENQLPHLLFYGPPGTGKTSTILACAKQMYTPQQ 414
VEKYRP +LDD+VSH+ I TI +F+ +N LPHL F+GPPGTGKT+T +A + Q+Y
Sbjct: 10 VEKYRPSKLDDVVSHEACISTIKKFIDKNCLPHLCFHGPPGTGKTTTAIAISHQLYG-ND 68
Query: 415 FSSMVLELNASDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRII 594
S VLELNASD+RGI VR +I FAS+R++F KLIILDE+DAMT AQ ALRRI+
Sbjct: 69 TSMSVLELNASDERGIDTVRMRIKDFASSRSLFGPKIKLIILDESDAMTGAAQAALRRIM 128
Query: 595 EKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGM 774
E++T NVRF +ICNY K+IPAL+SRCT FRF PL + L+ I E + M EGG+
Sbjct: 129 EQFTSNVRFILICNYPEKLIPALRSRCTEFRFQPLPDEDAAKFLRHIADAEKLNMDEGGL 188
Query: 775 KALLTWSGGDMXK 813
KALL GD+ +
Sbjct: 189 KALLKLGIGDLRR 201
>UniRef50_Q5CUE4 Cluster: Replication factor RFC3 AAA+ ATpase; n=2;
Cryptosporidium|Rep: Replication factor RFC3 AAA+ ATpase
- Cryptosporidium parvum Iowa II
Length = 383
Score = 122 bits (295), Expect(2) = 4e-55
Identities = 59/97 (60%), Positives = 75/97 (77%)
Frame = +1
Query: 526 KLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQ 705
KLIILDEAD MT+ AQ ALRRI+E+Y+E+VRFCIICNY+ KI PALQSRCTRFRF+PL
Sbjct: 141 KLIILDEADMMTSTAQMALRRIMERYSEHVRFCIICNYVNKITPALQSRCTRFRFSPLPI 200
Query: 706 DQIVPRLQEIVTTEGVKMSEGGMKALLTWSGGDMXKV 816
+ I R+ EI +E + ++ G ++L+ S GDM KV
Sbjct: 201 EDIRNRISEIALSERIFITREGQESLIKSSRGDMRKV 237
Score = 116 bits (278), Expect(2) = 4e-55
Identities = 56/89 (62%), Positives = 68/89 (76%)
Frame = +1
Query: 235 VEKYRPKRLDDLVSHDDIIKTINQFMKENQLPHLLFYGPPGTGKTSTILACAKQMYTPQQ 414
VEKYRP L DL+SH DII TI +F+ QLPHLLF+GPPGTGKTSTI A +K +Y ++
Sbjct: 15 VEKYRPSGLQDLLSHKDIINTIEKFISSGQLPHLLFHGPPGTGKTSTIHAISKCIYKDRK 74
Query: 415 FSSMVLELNASDDRGIGIVRGQILSFAST 501
+ MVLELNASDDRGI +VR I SF+ +
Sbjct: 75 Y-QMVLELNASDDRGINVVRDAIKSFSES 102
>UniRef50_A7ATE5 Cluster: Replication factor C3 protein, putative;
n=1; Babesia bovis|Rep: Replication factor C3 protein,
putative - Babesia bovis
Length = 348
Score = 217 bits (529), Expect = 4e-55
Identities = 110/205 (53%), Positives = 141/205 (68%), Gaps = 11/205 (5%)
Frame = +1
Query: 235 VEKYRPKRLDDLVSHDDIIKTINQFMKENQLPHLLFYGPPGTGKTSTILACAKQMYTPQQ 414
VEKYRP+ D++SHDDI+ T+ F ++ QLPHLLF+GPPGTGKTSTI+A ++ +Y +
Sbjct: 10 VEKYRPESFSDIISHDDILSTLMNFAEKGQLPHLLFHGPPGTGKTSTIMAVSRYLYGSHR 69
Query: 415 FSSMVLELNASDDRGIGIVRGQILSFASTRTIFKAG-------P----KLIILDEADAMT 561
S V+ELNASD+RGI VR QI +FA T F +G P KLIILDEAD MT
Sbjct: 70 HS-YVMELNASDERGIETVREQIKTFAETSNTFSSGIVGSDSGPRTNLKLIILDEADQMT 128
Query: 562 NDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVT 741
N AQN+LRRI+E Y+ NVRFC+ICN++ +IIP +QSRCT FRF PLK D + R +I
Sbjct: 129 NAAQNSLRRIMEIYSSNVRFCLICNFMNRIIPPIQSRCTGFRFPPLKNDVVKRRTADIAK 188
Query: 742 TEGVKMSEGGMKALLTWSGGDMXKV 816
EG+ +SE + L GDM +V
Sbjct: 189 AEGLTVSECALDTLAEIGQGDMRRV 213
>UniRef50_A0CAF3 Cluster: Chromosome undetermined scaffold_161,
whole genome shotgun sequence; n=2;
Oligohymenophorea|Rep: Chromosome undetermined
scaffold_161, whole genome shotgun sequence - Paramecium
tetraurelia
Length = 340
Score = 210 bits (512), Expect = 4e-53
Identities = 102/199 (51%), Positives = 140/199 (70%), Gaps = 5/199 (2%)
Frame = +1
Query: 235 VEKYRPKRLDDLVSHDDIIKTINQFMKENQLPHLLFYGPPGTGKTSTILACAKQMYTPQQ 414
+EKYRP LD+++SH++I+ TI +F ++N+LP+LL YGPPGTGKTSTI+A AKQ+Y +
Sbjct: 18 IEKYRPSTLDEVISHEEIVATIKKFNEKNRLPNLLLYGPPGTGKTSTIIALAKQIYQ-NK 76
Query: 415 FSSMVLELNASDDRGIGIVRGQILSFASTRTIF-----KAGPKLIILDEADAMTNDAQNA 579
++ MVLELNASD+RGI VR I FA +++ KL+ILDEADAMT AQ A
Sbjct: 77 YNQMVLELNASDERGINTVRETIKGFAESQSFTFTKDKNTSIKLVILDEADAMTAAAQFA 136
Query: 580 LRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKM 759
LRRIIEKY + RFC ICN++ +IIPA+QSRCTRF+F + D R++ I E + +
Sbjct: 137 LRRIIEKYAKTTRFCFICNHISQIIPAIQSRCTRFKFKQISLDVASSRIKYICENESIPL 196
Query: 760 SEGGMKALLTWSGGDMXKV 816
+E +K++ GDM +V
Sbjct: 197 NEQAIKSVFELCSGDMRRV 215
>UniRef50_UPI000049A58F Cluster: activator 1 36 kda subunit; n=1;
Entamoeba histolytica HM-1:IMSS|Rep: activator 1 36 kda
subunit - Entamoeba histolytica HM-1:IMSS
Length = 325
Score = 209 bits (511), Expect = 6e-53
Identities = 98/194 (50%), Positives = 135/194 (69%)
Frame = +1
Query: 235 VEKYRPKRLDDLVSHDDIIKTINQFMKENQLPHLLFYGPPGTGKTSTILACAKQMYTPQQ 414
VEKYRP D + H+ I++++ QF+ NQ+PH+LFYGPPGTGKT+T LA KQ+ +
Sbjct: 6 VEKYRPSTTDGIFGHEYILESLKQFINANQIPHMLFYGPPGTGKTTTALAIVKQL-CGTK 64
Query: 415 FSSMVLELNASDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRII 594
FS++VLELNASD+RGI +VR QI SFASTRT++ K IILDE+D +T DAQNALRR +
Sbjct: 65 FSALVLELNASDERGIDVVRDQIKSFASTRTLYTNCTKFIILDESDKLTKDAQNALRRTL 124
Query: 595 EKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGM 774
E+++ N RF ICN + I PA+QSRC + RF PL D + ++ I EG+++ E
Sbjct: 125 EQFSANCRFIFICNEVHLITPAIQSRCAKMRFGPLSPDALTKIVENITMKEGMEIDEDAK 184
Query: 775 KALLTWSGGDMXKV 816
K+++ S GD +
Sbjct: 185 KSIIEISKGDARSI 198
>UniRef50_UPI0000E4A8C8 Cluster: PREDICTED: similar to replication
factor C subunit RFC5; n=2; Strongylocentrotus
purpuratus|Rep: PREDICTED: similar to replication factor
C subunit RFC5 - Strongylocentrotus purpuratus
Length = 292
Score = 204 bits (497), Expect = 3e-51
Identities = 95/118 (80%), Positives = 109/118 (92%)
Frame = +1
Query: 235 VEKYRPKRLDDLVSHDDIIKTINQFMKENQLPHLLFYGPPGTGKTSTILACAKQMYTPQQ 414
VEKYRP LDDL+SH +II TI +F+K+++LPHLLFYGPPGTGKTSTILA AKQ+Y P++
Sbjct: 4 VEKYRPNSLDDLISHTEIINTIQKFIKQDRLPHLLFYGPPGTGKTSTILAVAKQLYAPKE 63
Query: 415 FSSMVLELNASDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRR 588
F+SMVLELNASDDRGIGIVRG IL+FASTRTIFK+G KL+ILDEADAMTNDAQNALRR
Sbjct: 64 FNSMVLELNASDDRGIGIVRGSILNFASTRTIFKSGFKLVILDEADAMTNDAQNALRR 121
Score = 37.1 bits (82), Expect = 0.53
Identities = 15/22 (68%), Positives = 18/22 (81%)
Frame = +1
Query: 232 RVEKYRPKRLDDLVSHDDIIKT 297
+VEKYRP LDDL+SH +II T
Sbjct: 269 QVEKYRPNSLDDLISHTEIINT 290
>UniRef50_A5E7K0 Cluster: Activator 1 41 kDa subunit; n=1;
Lodderomyces elongisporus NRRL YB-4239|Rep: Activator 1
41 kDa subunit - Lodderomyces elongisporus (Yeast)
(Saccharomyces elongisporus)
Length = 402
Score = 194 bits (473), Expect = 2e-48
Identities = 104/208 (50%), Positives = 133/208 (63%), Gaps = 15/208 (7%)
Frame = +1
Query: 235 VEKYRPKRLDDLVSHDDIIKTINQFMKENQLPHLLFYGPPGTGKTSTILACAKQMYTPQQ 414
VEKYRPK LDD+ S D +K + + + LPH+LFYGPPGTGKTSTILA AKQ+Y P
Sbjct: 38 VEKYRPKNLDDVASQDHAVKVLKKQISTGNLPHMLFYGPPGTGKTSTILALAKQLYGPNL 97
Query: 415 FSSMVLELNASDDRGIGIVRGQILSFAS------TRTIFKAGP----KLIILDEADAMTN 564
+ S VLELNASD+RGI IVR +I +FA T + P K+IILDEAD+MTN
Sbjct: 98 YKSRVLELNASDERGISIVRQKIKNFAKLTVSNPTEDDLRNYPCPPYKIIILDEADSMTN 157
Query: 565 DAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTT 744
DAQ+ALRR +E Y RF ++CNY+ +II L SRC++FRF L + + RL+ I
Sbjct: 158 DAQSALRRTMETYANITRFALVCNYITRIIDPLASRCSKFRFKLLNNENSLNRLKYIAKE 217
Query: 745 EGVKMSEGG-----MKALLTWSGGDMXK 813
E + + E G + +L S GDM K
Sbjct: 218 ENLHLDEKGAPDEVLNEVLRISNGDMRK 245
>UniRef50_Q245Y3 Cluster: ATPase, AAA family protein; n=2;
Oligohymenophorea|Rep: ATPase, AAA family protein -
Tetrahymena thermophila SB210
Length = 373
Score = 194 bits (472), Expect = 3e-48
Identities = 102/223 (45%), Positives = 144/223 (64%), Gaps = 10/223 (4%)
Frame = +1
Query: 175 TKNHNSIYFNTTIKTL---FLRRVEKYRPKRLDDLVSHDDIIKTINQFMKENQLPHLLFY 345
TK++N + T + L L VEKYRP +++++ +++IK++ + LPHL+ +
Sbjct: 22 TKDNNRMEEETKTEELNNNLLPWVEKYRPNKIEEVSYQEEVIKSLQGVLLSGNLPHLILH 81
Query: 346 GPPGTGKTSTILACAKQMYTPQQFSSMVLELNASDDRGIGIVRGQILSFA------STRT 507
GPPGTGKTS+ILA AKQ+Y P + +LELNASDDRGI IVR +I FA +
Sbjct: 82 GPPGTGKTSSILAFAKQLYGPTFYKERILELNASDDRGIQIVRDKIKKFAQQVVSKNPDK 141
Query: 508 IFKA-GPKLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRF 684
FK K+IILDEAD+MT +AQ+ALRRIIE + RFCIICNY+ KII L SRC +F
Sbjct: 142 SFKCPNFKIIILDEADSMTTEAQSALRRIIEDTSSTTRFCIICNYITKIIEPLGSRCVKF 201
Query: 685 RFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKALLTWSGGDMXK 813
RF P+ + + +L+EI TE ++ + ++ L+ S GD+ K
Sbjct: 202 RFKPIPLEAQITKLEEICKTEDIEYEKEALEKLIKISNGDLRK 244
>UniRef50_A6R5J4 Cluster: Activator 1 subunit 3; n=1; Ajellomyces
capsulatus NAm1|Rep: Activator 1 subunit 3 - Ajellomyces
capsulatus NAm1
Length = 366
Score = 193 bits (471), Expect = 4e-48
Identities = 103/199 (51%), Positives = 132/199 (66%), Gaps = 1/199 (0%)
Frame = +1
Query: 220 LFLRRVEKYRPKRLDDLVSHDDIIKTINQFMKENQLPHLLFYGPPGTGKTSTILACAKQM 399
+F +RVEKYRP L+D V + I N + +LPHLL YGPPGTGKTSTILA A+++
Sbjct: 69 VFSKRVEKYRPNTLEDAVPNAPNIDWTNPLFVQ-RLPHLLLYGPPGTGKTSTILALARRI 127
Query: 400 YTPQQFSSMVLELNASDDRGIGIVRGQILSFASTRTIFKAGP-KLIILDEADAMTNDAQN 576
Y + MVLELNASDDRGI + ++ + + G KLIILDEADAMT AQ
Sbjct: 128 YGVKNMRQMVLELNASDDRGIDVFVIHPFRYSLSNSESTLGAFKLIILDEADAMTATAQM 187
Query: 577 ALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVK 756
ALRRI+EKYT N RFCII NY K+ PAL SRCTRFRF+PLK++ I + ++V E V+
Sbjct: 188 ALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEEDIRVLVDQVVEKERVR 247
Query: 757 MSEGGMKALLTWSGGDMXK 813
+ + +L+ S GDM +
Sbjct: 248 IQPEAIDSLVQLSKGDMRR 266
>UniRef50_P40348 Cluster: Replication factor C subunit 2; n=7;
Saccharomycetales|Rep: Replication factor C subunit 2 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 353
Score = 192 bits (468), Expect = 9e-48
Identities = 98/204 (48%), Positives = 132/204 (64%), Gaps = 11/204 (5%)
Frame = +1
Query: 235 VEKYRPKRLDDLVSHDDIIKTINQFMKENQLPHLLFYGPPGTGKTSTILACAKQMYTPQQ 414
VEKYRPK LD++ + D + + + +K LPH+LFYGPPGTGKTSTILA K++Y P
Sbjct: 28 VEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDL 87
Query: 415 FSSMVLELNASDDRGIGIVRGQILSFASTRTIFKAGP-----------KLIILDEADAMT 561
S +LELNASD+RGI IVR ++ +FA T+ K K+IILDEAD+MT
Sbjct: 88 MKSRILELNASDERGISIVREKVKNFARL-TVSKPSKHDLENYPCPPYKIIILDEADSMT 146
Query: 562 NDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVT 741
DAQ+ALRR +E Y+ RFC+ICNY+ +II L SRC++FRF L + RL+ I
Sbjct: 147 ADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALDASNAIDRLRFISE 206
Query: 742 TEGVKMSEGGMKALLTWSGGDMXK 813
E VK +G ++ +L S GD+ +
Sbjct: 207 QENVKCDDGVLERILDISAGDLRR 230
>UniRef50_Q4WW89 Cluster: Replication factor C subunit; n=1;
Aspergillus fumigatus|Rep: Replication factor C subunit
- Aspergillus fumigatus (Sartorya fumigata)
Length = 389
Score = 190 bits (464), Expect = 3e-47
Identities = 101/198 (51%), Positives = 127/198 (64%), Gaps = 8/198 (4%)
Frame = +1
Query: 238 EKYRPKRLDDLVSHDDIIKTINQFMKENQLPHLLFYGPPGTGKTSTILACAKQMYTPQQF 417
+KYRP L +V D+ + + FM + PHLLF+GPPGTGKTSTILA A+Q+Y
Sbjct: 23 DKYRPATLKQVVGQDETLSVLKSFMIHRKFPHLLFHGPPGTGKTSTILALARQLYGDADM 82
Query: 418 SSMVLELNASDDRGIGIVRGQILSFASTRTIFKA----GP----KLIILDEADAMTNDAQ 573
S MVLELNASDDR + V+ +I +FASTR IFK P KL+ILDEAD M + AQ
Sbjct: 83 SQMVLELNASDDRSVHDVQIRIKAFASTRPIFKVPLRESPYNMFKLVILDEADTMDHTAQ 142
Query: 574 NALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGV 753
ALRRIIE Y RFCII N + K++PAL SRC R RF PL+ I L ++ TTE +
Sbjct: 143 MALRRIIEDYAAFTRFCIITNNIHKLLPALISRCARLRFPPLRPSAIRTLLLQVATTENI 202
Query: 754 KMSEGGMKALLTWSGGDM 807
++ ++ L T S GDM
Sbjct: 203 QVRPEALEYLSTTSHGDM 220
>UniRef50_P35249 Cluster: Replication factor C subunit 4; n=34;
Eukaryota|Rep: Replication factor C subunit 4 - Homo
sapiens (Human)
Length = 363
Score = 190 bits (462), Expect = 5e-47
Identities = 96/200 (48%), Positives = 138/200 (69%), Gaps = 7/200 (3%)
Frame = +1
Query: 235 VEKYRPKRLDDLVSHDDIIKTINQFMKENQLPHLLFYGPPGTGKTSTILACAKQMYTPQQ 414
VEKYRPK +D++ ++++ + + ++ LP+LLFYGPPGTGKTSTILA A++++ P+
Sbjct: 41 VEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPEL 100
Query: 415 FSSMVLELNASDDRGIGIVRGQILSFA-----STRTIFKAGP--KLIILDEADAMTNDAQ 573
F VLELNASD+RGI +VR ++ +FA +R+ K P K++ILDEAD+MT+ AQ
Sbjct: 101 FRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQ 160
Query: 574 NALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGV 753
ALRR +EK ++ RFC+ICNY+ +II L SRC++FRF PL RL +I E V
Sbjct: 161 AALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKKENV 220
Query: 754 KMSEGGMKALLTWSGGDMXK 813
K+S+ G+ L+ S GD+ K
Sbjct: 221 KISDEGIAYLVKVSEGDLRK 240
>UniRef50_Q9XI09 Cluster: F8K7.11 protein; n=11; Eukaryota|Rep:
F8K7.11 protein - Arabidopsis thaliana (Mouse-ear cress)
Length = 319
Score = 185 bits (451), Expect = 1e-45
Identities = 92/201 (45%), Positives = 130/201 (64%), Gaps = 8/201 (3%)
Frame = +1
Query: 235 VEKYRPKRLDDLVSHDDIIKTINQFMKENQLPHLLFYGPPGTGKTSTILACAKQMYTPQQ 414
VEKYRPK++ D+ +++++ + ++ PH+LFYGPPGTGKT+T LA A Q++ P+
Sbjct: 12 VEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTALAIAHQLFGPEL 71
Query: 415 FSSMVLELNASDDRGIGIVRGQILSFAST------RTIFKAGP--KLIILDEADAMTNDA 570
+ S VLELNASDDRGI +VR +I FA+ R P K+IILDEAD+MT DA
Sbjct: 72 YKSRVLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIIILDEADSMTEDA 131
Query: 571 QNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEG 750
QNALRR +E Y++ RF ICNY+ +II L SRC +FRF PL ++ + R+ I EG
Sbjct: 132 QNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSNRILHICNEEG 191
Query: 751 VKMSEGGMKALLTWSGGDMXK 813
+ + + L + S GD+ +
Sbjct: 192 LSLDGEALSTLSSISQGDLRR 212
>UniRef50_A2E6V9 Cluster: ATPase, AAA family protein; n=2;
Trichomonas vaginalis G3|Rep: ATPase, AAA family protein
- Trichomonas vaginalis G3
Length = 325
Score = 185 bits (451), Expect = 1e-45
Identities = 96/195 (49%), Positives = 126/195 (64%), Gaps = 2/195 (1%)
Frame = +1
Query: 235 VEKYRPKRLDDLVSHDDIIKTINQFMKENQLPHLLFYGPPGTGKTSTILACAKQMYTPQQ 414
VEKYRPK LDD+V ++ +K + ++ LPHL+F+GPPGTGKTS LA + ++
Sbjct: 11 VEKYRPKNLDDIVQQEEAVKALKTTLETGDLPHLIFHGPPGTGKTSLALALCRSLFG-DD 69
Query: 415 FSSMVLELNASDDRGIGIVRGQILSFASTRTIFKAGP-KLIILDEADAMTNDAQNALRRI 591
F V ELNASD+RGI VR I FAS P K++ILDEAD+MT+ AQNALRRI
Sbjct: 70 FRLRVKELNASDERGIDAVRSSIKEFASLAVPNGKIPFKIVILDEADSMTSAAQNALRRI 129
Query: 592 IEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKM-SEG 768
IE Y+ RF IICNY+ KII + SRC +FRF PL + I+ RL +I + + + SE
Sbjct: 130 IETYSSVTRFIIICNYVSKIIDPILSRCAKFRFKPLDRPAIIERLHKIFEDQNLSVDSED 189
Query: 769 GMKALLTWSGGDMXK 813
+ L+ SGGD+ K
Sbjct: 190 TYETLVNISGGDLRK 204
>UniRef50_Q9UXF5 Cluster: Replication factor C small subunit; n=18;
Thermoprotei|Rep: Replication factor C small subunit -
Sulfolobus solfataricus
Length = 330
Score = 185 bits (450), Expect = 1e-45
Identities = 92/192 (47%), Positives = 123/192 (64%)
Frame = +1
Query: 238 EKYRPKRLDDLVSHDDIIKTINQFMKENQLPHLLFYGPPGTGKTSTILACAKQMYTPQQF 417
EKYRPK LDD+V+ +II + +F+KE +PHLLF GPPGTGKT+ LA +Y +
Sbjct: 12 EKYRPKTLDDIVNQREIIDRLKKFVKEKNMPHLLFAGPPGTGKTTAALALVHDLYG-DNY 70
Query: 418 SSMVLELNASDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIE 597
+ LELNASD+RGI ++R ++ FA T K+++LDEAD MT DAQ ALRR +E
Sbjct: 71 TEYFLELNASDERGIDVIRNKVKEFARTVIPGDIPFKVVLLDEADNMTADAQQALRRTME 130
Query: 598 KYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMK 777
YTEN RF + CNYL KII +QSR FRF PLK++ +V RL I E + + ++
Sbjct: 131 LYTENTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVNRLIYIAKNEKAEYDQKALE 190
Query: 778 ALLTWSGGDMXK 813
+ + GDM K
Sbjct: 191 TIYDITMGDMRK 202
>UniRef50_UPI0000DB75B4 Cluster: PREDICTED: similar to CG8142-PA;
n=1; Apis mellifera|Rep: PREDICTED: similar to CG8142-PA
- Apis mellifera
Length = 310
Score = 184 bits (448), Expect = 2e-45
Identities = 93/182 (51%), Positives = 128/182 (70%), Gaps = 7/182 (3%)
Frame = +1
Query: 235 VEKYRPKRLDDLVSHDDIIKTINQFMKENQLPHLLFYGPPGTGKTSTILACAKQMYTPQQ 414
VEKYRPK ++D+V ++++ + Q +K P+LLFYGPPGTGKTSTILA A+Q++
Sbjct: 35 VEKYRPKNVEDVVEQTEVVEVLRQCLKGGDFPNLLFYGPPGTGKTSTILAAARQLFG-SL 93
Query: 415 FSSMVLELNASDDRGIGIVRGQILSFAST-----RTIFKAGP--KLIILDEADAMTNDAQ 573
+ VLELNASD+RGI +VR +I SFA R K+ P K+I+LDEAD+MT AQ
Sbjct: 94 YKERVLELNASDERGIQVVREKIKSFAQLTAGGMRDDGKSCPPFKIIVLDEADSMTGAAQ 153
Query: 574 NALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGV 753
ALRR +EK + + RFC+ICNY+ +II L SRCT+FRF PL +++I+ RL+ I E +
Sbjct: 154 AALRRTMEKESHSTRFCLICNYVSRIIEPLTSRCTKFRFKPLGENKIIERLEYICKEEDL 213
Query: 754 KM 759
K+
Sbjct: 214 KI 215
>UniRef50_Q5CVS5 Cluster: Replication factor C like AAA ATpase; n=2;
Cryptosporidium|Rep: Replication factor C like AAA
ATpase - Cryptosporidium parvum Iowa II
Length = 335
Score = 184 bits (448), Expect = 2e-45
Identities = 89/205 (43%), Positives = 134/205 (65%), Gaps = 12/205 (5%)
Frame = +1
Query: 235 VEKYRPKRLDDLVSHDDIIKTINQFMKENQLPHLLFYGPPGTGKTSTILACAKQMYTPQQ 414
VEKYRP + D+ H D++ ++ +K +PHLLF+GPPGTGKTS +LA +++++ P +
Sbjct: 10 VEKYRPGNVLDISHHKDVVSMLSHVLKNGNMPHLLFHGPPGTGKTSAVLALSRELFGPNE 69
Query: 415 FSSMVLELNASDDRGIGIVRGQILSFASTRTIFKAGP------------KLIILDEADAM 558
+ + +LELNASD+RGI +VR +I S+ TR + + K++ILDEA+ M
Sbjct: 70 YKNRILELNASDERGISVVRDKIKSW--TRQVVQCNKTHEITGNLLPSWKIVILDEAEMM 127
Query: 559 TNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIV 738
T DAQ+ALRRIIE ++N RF IICNY+ KII L SRC +FRF P+ + + RL+ I
Sbjct: 128 TADAQSALRRIIEVSSKNTRFVIICNYISKIIEPLASRCAKFRFQPISANSQIERLKYIC 187
Query: 739 TTEGVKMSEGGMKALLTWSGGDMXK 813
+ E V +G ++ ++ S GD+ +
Sbjct: 188 SQEDVSYEDGVLETIVNLSQGDLRR 212
>UniRef50_P53016 Cluster: Replication factor C subunit 4; n=2;
Caenorhabditis|Rep: Replication factor C subunit 4 -
Caenorhabditis elegans
Length = 334
Score = 184 bits (448), Expect = 2e-45
Identities = 90/199 (45%), Positives = 129/199 (64%), Gaps = 7/199 (3%)
Frame = +1
Query: 238 EKYRPKRLDDLVSHDDIIKTINQFMKENQLPHLLFYGPPGTGKTSTILACAKQMYTPQQF 417
EKYRPK LDD+ D+++ + ++ LPHLLFYGPPGTGKTS LA +Q++ F
Sbjct: 19 EKYRPKTLDDIAYQDEVVTMLKGALQGRDLPHLLFYGPPGTGKTSAALAFCRQLFPKNIF 78
Query: 418 SSMVLELNASDDRGIGIVRGQILSFAST-------RTIFKAGPKLIILDEADAMTNDAQN 576
VL+LNASD+RGI +VR +I SF+ + + K K+IILDE DAMT +AQ
Sbjct: 79 HDRVLDLNASDERGIAVVRQKIQSFSKSSLGHSHREDVLKL--KIIILDEVDAMTREAQA 136
Query: 577 ALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVK 756
A+RR+IE +++ RF +ICNY+ ++IP + SRC +FRF L + V RL+ I EG
Sbjct: 137 AMRRVIEDFSKTTRFILICNYVSRLIPPVVSRCAKFRFKSLPAEIQVQRLRTICDAEGTP 196
Query: 757 MSEGGMKALLTWSGGDMXK 813
MS+ +K ++ +S GD+ +
Sbjct: 197 MSDDELKQVMEYSEGDLRR 215
>UniRef50_Q5UZE5 Cluster: Replication factor C small subunit; n=5;
Halobacteriaceae|Rep: Replication factor C small subunit
- Haloarcula marismortui (Halobacterium marismortui)
Length = 325
Score = 182 bits (442), Expect = 1e-44
Identities = 86/193 (44%), Positives = 130/193 (67%)
Frame = +1
Query: 235 VEKYRPKRLDDLVSHDDIIKTINQFMKENQLPHLLFYGPPGTGKTSTILACAKQMYTPQQ 414
+EKYRP+ LDD++ H++I+ + ++ N L H+LF GP GTGKT+ A A+++Y
Sbjct: 17 IEKYRPQTLDDVMGHENIVGRLKSYVSRNDLSHMLFSGPAGTGKTTCATAIARELYG-DD 75
Query: 415 FSSMVLELNASDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRII 594
+ LELNASD+RGI +VR +I +FA T + ++I LDEADA+T+DAQ+ALRR +
Sbjct: 76 WREHFLELNASDERGIDVVRDRIKNFART-SFGGVEYRIIFLDEADALTSDAQSALRRTM 134
Query: 595 EKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGM 774
E+++ NVRF + CNY +II +QSRC FRF+PL D + ++ I E ++++E G+
Sbjct: 135 EQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADDAVAEEIRTIAAEEDIELTEDGL 194
Query: 775 KALLTWSGGDMXK 813
AL+ + GDM K
Sbjct: 195 DALVYAADGDMRK 207
>UniRef50_Q0UV64 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 411
Score = 181 bits (441), Expect = 2e-44
Identities = 99/219 (45%), Positives = 137/219 (62%), Gaps = 26/219 (11%)
Frame = +1
Query: 235 VEKYRPKRLDDLVSHDDIIKTINQFMKENQLPHLLFYGPPGTGKTSTILACAKQMYTPQQ 414
VEKYRPK L ++ + D+ I+ +++ ++ + LPH+LFYGPPGTGKTSTILA AKQ+Y P+
Sbjct: 36 VEKYRPKTLSEVTAQDNTIQILSRTLQSSNLPHMLFYGPPGTGKTSTILALAKQLYGPEL 95
Query: 415 FSSMVLELNASDDRGIGIVRGQILSFA----------STRTIFKAG--PKLI-------- 534
S VLELNASD+RGI IVR ++ FA + T K G K++
Sbjct: 96 MKSRVLELNASDERGISIVRQKVKDFARQQLSVAPTYNVMTEDKDGGEAKMVRYRDKYSC 155
Query: 535 ------ILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAP 696
+LDEAD+MT DAQ+ALRR +E Y+ RFC++CNY+ +II L SRC++FRF
Sbjct: 156 PPFKIIVLDEADSMTQDAQSALRRTMETYSRMTRFCLVCNYVTRIIDPLASRCSKFRFKS 215
Query: 697 LKQDQIVPRLQEIVTTEGVKMSEGGMKALLTWSGGDMXK 813
L Q V R+ +I E VK+ G + L+ + GD+ K
Sbjct: 216 LDQGNAVRRVDDIAKLEDVKLDAGVSEELVRVADGDLRK 254
>UniRef50_Q5UP47 Cluster: Putative replication factor C small
subunit L499; n=1; Acanthamoeba polyphaga mimivirus|Rep:
Putative replication factor C small subunit L499 -
Mimivirus
Length = 344
Score = 178 bits (433), Expect = 2e-43
Identities = 94/197 (47%), Positives = 135/197 (68%), Gaps = 6/197 (3%)
Frame = +1
Query: 235 VEKYRPKRLDDLVSHDDIIKTINQFMKENQLPHLLFYGPPGTGKTSTILACAKQMYTPQQ 414
VEKYRP+ +D ++S+ DII ++ +F++ LPHLLF+GP G+GKTSTI CA+++Y +
Sbjct: 20 VEKYRPQEIDHIISNRDIILSLKKFIESRTLPHLLFFGPSGSGKTSTIKCCAREIYG-KY 78
Query: 415 FSSMVLELNASDDRGIGIVRGQILSFASTRT-IF-KAGP----KLIILDEADAMTNDAQN 576
+ M+LELNAS++RGI VR +I +F S+++ IF G KL+ILDE D+MT +AQ
Sbjct: 79 INYMILELNASNERGIETVRTKIKNFVSSKSSIFLPMGVRDIFKLVILDEIDSMTVEAQG 138
Query: 577 ALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVK 756
LR+ IEK + RFC+ICN + KI ALQSRC FRF+PL + + RL +I EGVK
Sbjct: 139 MLRQTIEKNSGTTRFCLICNDIDKINIALQSRCASFRFSPLNELDMHGRLSDICRLEGVK 198
Query: 757 MSEGGMKALLTWSGGDM 807
+ + +++ S GDM
Sbjct: 199 YEKEAINSIIKISKGDM 215
>UniRef50_Q8QNA5 Cluster: EsV-1-182; n=1; Ectocarpus siliculosus
virus 1|Rep: EsV-1-182 - Ectocarpus siliculosus virus 1
Length = 326
Score = 177 bits (430), Expect = 4e-43
Identities = 95/198 (47%), Positives = 128/198 (64%), Gaps = 7/198 (3%)
Frame = +1
Query: 235 VEKYRPKRLDDLVSHDDIIKTINQFMKENQLPHLLFYGPPGTGKTSTILACAKQMYTPQQ 414
VEKYRP+R+ D+V HD + + +N K LPHLLF+GPPGTGKTSTILA A+ +
Sbjct: 5 VEKYRPRRVRDVVHHDHLKRVLNGAEKTGDLPHLLFHGPPGTGKTSTILALARTLLGEGN 64
Query: 415 FSSMVLELNASDDRGIGIVRGQILSFAS-TRTIFKAG-P--KLIILDEADAMTNDAQNAL 582
VLELNASD+RG+ +VR +I +F+ + + F+ G P KL+ILDEAD MT DAQ+AL
Sbjct: 65 MRERVLELNASDERGLDVVRDKIKTFSKMSISSFQPGCPPFKLVILDEADTMTADAQSAL 124
Query: 583 RRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGV--- 753
RR +E ++ RFC++CNY+ KII L SRC +FRF+ L + RL I E +
Sbjct: 125 RRTMETHSVVTRFCLVCNYVSKIIAPLASRCAKFRFSTLAPKSMKGRLLHICERENIIFE 184
Query: 754 KMSEGGMKALLTWSGGDM 807
S + A++ S GDM
Sbjct: 185 NCSRSVLDAIVKSSRGDM 202
>UniRef50_Q4Q732 Cluster: Replication factor C, subunit 2, putative;
n=6; Trypanosomatidae|Rep: Replication factor C, subunit
2, putative - Leishmania major
Length = 354
Score = 176 bits (429), Expect = 5e-43
Identities = 91/206 (44%), Positives = 132/206 (64%), Gaps = 15/206 (7%)
Frame = +1
Query: 235 VEKYRPKRLDDLVSHDDIIKTINQFMKEN-QLPHLLFYGPPGTGKTSTILACAKQMYTPQ 411
VEKYRP+ L ++ + D+ + + +KE +PH LF+GPPGTGKT++ILA A +++ P
Sbjct: 28 VEKYRPRTLAEVEAQDEAVGALRACLKEGANMPHFLFHGPPGTGKTTSILAVAHELFGPD 87
Query: 412 QFSSMVLELNASDDRGIGIVRGQILSFAS----------TRTIFKAGP----KLIILDEA 549
S V ELNASDDRGI +VR ++ FA T++ K P KLIILDEA
Sbjct: 88 YIRSRVRELNASDDRGISVVREKVKIFAQGAVSSSGSSVTQSDGKVYPVPPFKLIILDEA 147
Query: 550 DAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQ 729
DA+ DAQ ALRR++E +++ RFCI+CNY+ +II + SRC ++RF PL + + R++
Sbjct: 148 DALLPDAQAALRRMMEDFSDVTRFCILCNYVSRIIDPIASRCAKYRFKPLVKSALYHRIE 207
Query: 730 EIVTTEGVKMSEGGMKALLTWSGGDM 807
+ EG+ +S + AL T SGGD+
Sbjct: 208 YVAQAEGITLSPASLHALDTVSGGDL 233
>UniRef50_Q8PVY4 Cluster: Replication factor C small subunit; n=13;
cellular organisms|Rep: Replication factor C small
subunit - Methanosarcina mazei (Methanosarcina frisia)
Length = 338
Score = 176 bits (428), Expect = 6e-43
Identities = 85/193 (44%), Positives = 126/193 (65%)
Frame = +1
Query: 235 VEKYRPKRLDDLVSHDDIIKTINQFMKENQLPHLLFYGPPGTGKTSTILACAKQMYTPQQ 414
+EKYRP RL+ + ++ I+ + ++ LPHLLF GPPG GKT++ ++ A++++
Sbjct: 16 IEKYRPVRLNQVAGQEETIERLMSYVATKNLPHLLFSGPPGVGKTASAVSIAREIFGEDL 75
Query: 415 FSSMVLELNASDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRII 594
+ ELNASD+RGI IVR +I +FA T + A K+I LDEADA+T+DAQ+ALRR +
Sbjct: 76 WRENFTELNASDERGIDIVRNKIKNFAKTAPMGGAPFKIIFLDEADALTSDAQSALRRTM 135
Query: 595 EKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGM 774
EK++ N RF + CNY KII +QSRC +RF L I RL+ I + + +++GG
Sbjct: 136 EKFSSNCRFILSCNYSSKIIEPIQSRCAVYRFRRLSDKAIRERLEYIAKEQDLSITDGGY 195
Query: 775 KALLTWSGGDMXK 813
+AL+ + GDM K
Sbjct: 196 EALIYVAQGDMRK 208
>UniRef50_UPI0000498FA9 Cluster: activator 1 subunit; n=1; Entamoeba
histolytica HM-1:IMSS|Rep: activator 1 subunit -
Entamoeba histolytica HM-1:IMSS
Length = 329
Score = 175 bits (427), Expect = 8e-43
Identities = 89/193 (46%), Positives = 131/193 (67%), Gaps = 3/193 (1%)
Frame = +1
Query: 238 EKYRPKRLDDLVSHDDIIKTINQFMKENQLPHLLFYGPPGTGKTSTILACAKQMYTPQQF 417
EKYRPK LDD+ +++IK + + LP+LLF+GPPG+GKT++ILA A +++ F
Sbjct: 9 EKYRPKTLDDVQGQEEVIKLLKSSLNSG-LPNLLFFGPPGSGKTTSILAVAHELFQGY-F 66
Query: 418 SSMVLELNASDDRGIGIVRGQILSFASTR-TIFKAGP--KLIILDEADAMTNDAQNALRR 588
VLELNAS+ RGI +VR + ++A T + P KLIILDE+DA+T DAQ ALRR
Sbjct: 67 KERVLELNASNQRGIEMVRTTLKNYAMQDVTHYDGTPDYKLIILDESDALTPDAQTALRR 126
Query: 589 IIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEG 768
++E +T+N RFC+ICNY+ +I+P + SRC +FRF+ L ++ + RLQ I EG ++
Sbjct: 127 MMEDFTKNTRFCLICNYISRILPPISSRCIKFRFSALPKEIVSNRLQMICEKEGFSVTNE 186
Query: 769 GMKALLTWSGGDM 807
++A+ S GD+
Sbjct: 187 AIQAVSILSEGDL 199
>UniRef50_Q8SSI2 Cluster: DNA REPLICATION FACTOR C (ACTIVATOR 1)
SUBUNIT; n=1; Encephalitozoon cuniculi|Rep: DNA
REPLICATION FACTOR C (ACTIVATOR 1) SUBUNIT -
Encephalitozoon cuniculi
Length = 305
Score = 173 bits (420), Expect = 6e-42
Identities = 92/192 (47%), Positives = 127/192 (66%)
Frame = +1
Query: 238 EKYRPKRLDDLVSHDDIIKTINQFMKENQLPHLLFYGPPGTGKTSTILACAKQMYTPQQF 417
EKYRP L ++V + +++ ++ ++P++LFYGPPGTGKT++I A A + P+
Sbjct: 7 EKYRPGSLLEVVGNREVVSSLQSISSAGRIPNMLFYGPPGTGKTTSIRAIANNL--PR-- 62
Query: 418 SSMVLELNASDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIE 597
+ VLELNASD+RGI VR I FAST + KL+ILDEAD M+ DAQNALRRIIE
Sbjct: 63 -TSVLELNASDERGIATVRETIKEFAST---YSKTMKLVILDEADMMSRDAQNALRRIIE 118
Query: 598 KYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMK 777
++ N RFC+I N+L KII + SRCT+FRF P+ + R++EI E +K + G+K
Sbjct: 119 DFSANTRFCLIANHLRKIISPILSRCTKFRFGPIGDTE--NRIEEICKRESIKYTPEGIK 176
Query: 778 ALLTWSGGDMXK 813
A+ S GDM K
Sbjct: 177 AVSRISMGDMRK 188
>UniRef50_UPI0000499C0F Cluster: Activator 1 40 kDa subunit; n=1;
Entamoeba histolytica HM-1:IMSS|Rep: Activator 1 40 kDa
subunit - Entamoeba histolytica HM-1:IMSS
Length = 315
Score = 172 bits (418), Expect = 1e-41
Identities = 88/194 (45%), Positives = 122/194 (62%), Gaps = 1/194 (0%)
Frame = +1
Query: 235 VEKYRPKRLDDLVSHDDIIKTINQFMKENQLPHLLFYGPPGTGKTSTILACAKQMYTPQQ 414
VEKYRPK LD+++ + DIIKT+ F Q PHLL G PG GKT++I A ++ +
Sbjct: 10 VEKYRPKLLDEIIGNVDIIKTLKSFRDSKQFPHLLLCGQPGIGKTTSIHCLAHELLK-DR 68
Query: 415 FSSMVLELNASDDRGIGIVRGQILSFASTRTIFKAG-PKLIILDEADAMTNDAQNALRRI 591
+ VLELNASD+RGI +R I SF + + PK++ILDEAD+MT A ALRR
Sbjct: 69 YKDAVLELNASDERGIETIRSTIKSFCEKKLVLPDNLPKIVILDEADSMTTAAFQALRRT 128
Query: 592 IEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGG 771
+E +++ RF + CN KII +QSRC R F PL +++++ R++EI EGV + +
Sbjct: 129 MEIHSKTTRFVLACNTPEKIIEPIQSRCARLTFRPLGEEELMNRIKEIAHCEGVDIEDDA 188
Query: 772 MKALLTWSGGDMXK 813
+KAL S GDM K
Sbjct: 189 VKALEIVSEGDMRK 202
>UniRef50_Q8WSL8 Cluster: Replication factor C subunit 4; n=6;
Plasmodium|Rep: Replication factor C subunit 4 -
Plasmodium falciparum
Length = 336
Score = 169 bits (411), Expect = 7e-41
Identities = 87/194 (44%), Positives = 121/194 (62%), Gaps = 1/194 (0%)
Frame = +1
Query: 235 VEKYRPKRLDDLVSHDDIIKTINQFMKENQLPHLLFYGPPGTGKTSTILACAKQMYTPQQ 414
+EKYRP+ LD++V + +I T+ + +P+LL G PGTGKT++IL A +M Q
Sbjct: 19 IEKYRPEFLDEVVGNPFVINTLKSIITSGNMPNLLLAGAPGTGKTTSILCLASEMLG-NQ 77
Query: 415 FSSMVLELNASDDRGIGIVRGQILSFASTRTIFKAGP-KLIILDEADAMTNDAQNALRRI 591
VLELNASDDRGI ++R +I SFA G K+IILDE D+MT AQ +LRRI
Sbjct: 78 AKKAVLELNASDDRGINVIRDRIKSFAKEIISLPPGKHKIIILDEVDSMTTAAQQSLRRI 137
Query: 592 IEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGG 771
+E Y++ RF + CN KII ALQSRC R+ L DQ++ R+ +I E +K ++ G
Sbjct: 138 MELYSDTTRFALACNQSEKIIDALQSRCAIIRYFKLSDDQVLKRILKICDLENIKYTDDG 197
Query: 772 MKALLTWSGGDMXK 813
+ AL + GD+ K
Sbjct: 198 LDALTFIADGDLRK 211
>UniRef50_P35250 Cluster: Replication factor C subunit 2; n=103;
Eukaryota|Rep: Replication factor C subunit 2 - Homo
sapiens (Human)
Length = 354
Score = 169 bits (411), Expect = 7e-41
Identities = 84/192 (43%), Positives = 126/192 (65%), Gaps = 1/192 (0%)
Frame = +1
Query: 235 VEKYRPKRLDDLVSHDDIIKTINQFMKENQLPHLLFYGPPGTGKTSTILACAKQMYTPQQ 414
VEKYRP +L+++V ++D + + F +E +P+++ GPPGTGKT++IL A+ + P
Sbjct: 39 VEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPAL 98
Query: 415 FSSMVLELNASDDRGIGIVRGQILSFASTR-TIFKAGPKLIILDEADAMTNDAQNALRRI 591
+M LELNAS+DRGI +VR +I FA + T+ K K+IILDEAD+MT+ AQ ALRR
Sbjct: 99 KDAM-LELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRT 157
Query: 592 IEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGG 771
+E Y++ RF + CN KII +QSRC R+ L QI+ RL ++ E V ++ G
Sbjct: 158 MEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYTDDG 217
Query: 772 MKALLTWSGGDM 807
++A++ + GDM
Sbjct: 218 LEAIIFTAQGDM 229
>UniRef50_Q977Z9 Cluster: Replication factor C small subunit; n=4;
Thermoplasmatales|Rep: Replication factor C small
subunit - Thermoplasma volcanium
Length = 318
Score = 167 bits (406), Expect = 3e-40
Identities = 82/192 (42%), Positives = 120/192 (62%)
Frame = +1
Query: 238 EKYRPKRLDDLVSHDDIIKTINQFMKENQLPHLLFYGPPGTGKTSTILACAKQMYTPQQF 417
EKYRPK L ++ D+ I+ + F+++ +LPHLLF G GTGKTST +A A +++ + +
Sbjct: 7 EKYRPKSLSEIYGEDENIQKLKSFVEKKELPHLLFAGSVGTGKTSTAIALAIELFG-ESW 65
Query: 418 SSMVLELNASDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIE 597
+E+NAS++ GI ++R +I A R G K++ LDEAD +T +AQ ALRR +E
Sbjct: 66 KENFIEMNASNENGIDVIRNKIKDIARIRPSNPLGFKILFLDEADQLTAEAQAALRRTME 125
Query: 598 KYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMK 777
Y+E RF CNY KIIP +QSR RF P++ + I +L EI EG + + M+
Sbjct: 126 MYSETTRFVFACNYSSKIIPPIQSRTVVMRFRPVQDEFIKKKLNEIAKNEGFTIDDESME 185
Query: 778 ALLTWSGGDMXK 813
A++ SGGDM K
Sbjct: 186 AMVEVSGGDMRK 197
>UniRef50_Q4UIH2 Cluster: Replication factor C subunit (RPC2
homologue) , putative; n=3; Piroplasmida|Rep:
Replication factor C subunit (RPC2 homologue) , putative
- Theileria annulata
Length = 336
Score = 166 bits (403), Expect = 7e-40
Identities = 89/203 (43%), Positives = 124/203 (61%), Gaps = 10/203 (4%)
Frame = +1
Query: 235 VEKYRPKRLDDLVSHDDIIKTINQFMKENQLPHLLFYGPPGTGKTSTILACAKQMYTPQQ 414
VEKYRPK++ D++ + + Q ++ +PH++F+GPPGTGKTS LA A+Q+Y +
Sbjct: 10 VEKYRPKKISDVIFQTQAVSIMEQIIETFNMPHMIFHGPPGTGKTSAALAMARQIYGLEG 69
Query: 415 FSSMVLELNASDDRGIGIVRGQILSFASTR-TIFKAGP---------KLIILDEADAMTN 564
VLELNASD+RGI +VR +I ++ + + P K+IILDEAD +T
Sbjct: 70 MRERVLELNASDERGIDVVRDRIKTYTRINISNNRVNPETNRVMPNYKMIILDEADMITA 129
Query: 565 DAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTT 744
DAQ ALRR+IE Y+ RF +ICNYL KII + SRC+ F F P++ + + RL+ I
Sbjct: 130 DAQAALRRVIENYSSISRFILICNYLHKIIGPIYSRCSVFHFKPIETNSQIDRLKYICNQ 189
Query: 745 EGVKMSEGGMKALLTWSGGDMXK 813
EG+ K L T S GDM K
Sbjct: 190 EGITFDP---KFLTTISSGDMRK 209
>UniRef50_A7SA25 Cluster: Predicted protein; n=2; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 401
Score = 165 bits (402), Expect = 9e-40
Identities = 87/211 (41%), Positives = 131/211 (62%), Gaps = 1/211 (0%)
Frame = +1
Query: 178 KNHNSIYFNTTIKTLFLRRVEKYRPKRLDDLVSHDDIIKTINQFMKENQLPHLLFYGPPG 357
K++ ++ T K L VEKYRP +L ++V +++ + + F ++ +P+++ GPPG
Sbjct: 37 KDNKTVSEKKTKKGFELPWVEKYRPTKLHEIVGNEETVSRLEVFAQQGNVPNIIIAGPPG 96
Query: 358 TGKTSTILACAKQMYTPQQFSSMVLELNASDDRGIGIVRGQILSFASTR-TIFKAGPKLI 534
TGKT++IL A+ + VLELNAS+DRGI +VR +I FA + T+ K K+I
Sbjct: 97 TGKTTSILCLARALLGVS-LKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKII 155
Query: 535 ILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQI 714
ILDEAD+MT+ AQ ALRR +E Y++ RF + CN KII A+QSRC R+ L Q+
Sbjct: 156 ILDEADSMTDGAQQALRRTMEIYSKTTRFALACNTSDKIIEAIQSRCAILRYTRLTDAQV 215
Query: 715 VPRLQEIVTTEGVKMSEGGMKALLTWSGGDM 807
+ RL EI E V + G++A++ + GDM
Sbjct: 216 LTRLLEICDKEQVPKVDDGLEAIIFTAEGDM 246
>UniRef50_Q2NH89 Cluster: Replication factor C small subunit; n=2;
Methanobacteriaceae|Rep: Replication factor C small
subunit - Methanosphaera stadtmanae (strain DSM 3091)
Length = 321
Score = 165 bits (400), Expect = 2e-39
Identities = 83/193 (43%), Positives = 122/193 (63%)
Frame = +1
Query: 235 VEKYRPKRLDDLVSHDDIIKTINQFMKENQLPHLLFYGPPGTGKTSTILACAKQMYTPQQ 414
VEKYRP+ LDD+V + I+ + ++++E LP+++F G G GKT+ LA AK + +
Sbjct: 6 VEKYRPQTLDDVVGQEQIVGRLKRYVEEKSLPNIMFTGFAGVGKTTCALALAKSLLG-EY 64
Query: 415 FSSMVLELNASDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRII 594
+ LELNASD RGI VR +I SF + + A ++I LDE D MT DAQ ALRR +
Sbjct: 65 WQQNFLELNASDARGIDTVRNEIKSFCKLKAV-GAPFRIIFLDEVDNMTKDAQQALRREM 123
Query: 595 EKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGM 774
E YT+ F + CNY KII +QSRC FRF+P+K I+ RL+ I + EG++ + +
Sbjct: 124 EMYTKTSSFILSCNYSSKIIDPIQSRCAIFRFSPIKAANIIKRLKYIASEEGIEAEQSAL 183
Query: 775 KALLTWSGGDMXK 813
+ ++ ++ GDM K
Sbjct: 184 ENIVYFTQGDMRK 196
>UniRef50_Q5UQ72 Cluster: Putative replication factor C small
subunit L510; n=1; Acanthamoeba polyphaga mimivirus|Rep:
Putative replication factor C small subunit L510 -
Mimivirus
Length = 363
Score = 165 bits (400), Expect = 2e-39
Identities = 84/201 (41%), Positives = 126/201 (62%), Gaps = 8/201 (3%)
Frame = +1
Query: 235 VEKYRPKRLDDLVSHDDIIKTINQFMKENQLPHLLFYGPPGTGKTSTILACAKQMYTPQQ 414
+EKYRPK+L+D+ +++ K+ ++ H LFYGPPGTGKTS ILA ++++ +
Sbjct: 10 IEKYRPKKLEDITQSQNLLDLFKNSTKKGEMTHFLFYGPPGTGKTSAILAMGREIFK-EH 68
Query: 415 FSSMVLELNASDDRGIGIVRGQILSFASTRTI---FKAGP-----KLIILDEADAMTNDA 570
F + V+E NASDDRGI VR +I + A + G K+IILDEAD+MT++A
Sbjct: 69 FQNRVIEFNASDDRGINAVREKITNEAKKYVAEIKLEDGTIIPSYKIIILDEADSMTDEA 128
Query: 571 QNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEG 750
Q+ALR IIE+Y+ RFC ICNY+ KI A++SRC+ F L + +V +L +I E
Sbjct: 129 QDALRVIIEQYSTATRFCFICNYITKITDAIKSRCSSVYFKKLSDECMVEKLNDISLKES 188
Query: 751 VKMSEGGMKALLTWSGGDMXK 813
+++ + + ++ S GDM K
Sbjct: 189 MELPKNILHTIIDVSNGDMRK 209
>UniRef50_A7DR59 Cluster: Replication factor C; n=1; Candidatus
Nitrosopumilus maritimus SCM1|Rep: Replication factor C
- Candidatus Nitrosopumilus maritimus SCM1
Length = 316
Score = 163 bits (397), Expect = 4e-39
Identities = 84/192 (43%), Positives = 122/192 (63%), Gaps = 1/192 (0%)
Frame = +1
Query: 235 VEKYRPKRLDDLVSHDDIIKTINQFMKE-NQLPHLLFYGPPGTGKTSTILACAKQMYTPQ 411
VEKYRP +L ++V+ +II ++ +K+ +PHLLF G G GKT+T L ++Q+
Sbjct: 8 VEKYRPMKLSEVVNQTEIIGSLEALIKDPTDMPHLLFSGSAGVGKTTTALCISRQILGDY 67
Query: 412 QFSSMVLELNASDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRI 591
LELNASD+RGIG+VR ++ F+ + K+IILDEAD MT+DAQ ALRRI
Sbjct: 68 A-KDYTLELNASDERGIGMVREKVKKFSRYAGMADVPFKIIILDEADEMTSDAQTALRRI 126
Query: 592 IEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGG 771
IE + RF +I N + KII +QSRC F+F + ++ ++ RL+EI E VK + G
Sbjct: 127 IEDTAKICRFILIANNISKIIDPIQSRCATFKFTAVPEEDVIKRLEEIAKKEKVKADKKG 186
Query: 772 MKALLTWSGGDM 807
+KA+ +S GD+
Sbjct: 187 LKAIYDYSEGDL 198
>UniRef50_Q9GR07 Cluster: Replication factor C subunit 2; n=6;
Plasmodium|Rep: Replication factor C subunit 2 -
Plasmodium falciparum
Length = 330
Score = 163 bits (396), Expect = 5e-39
Identities = 83/204 (40%), Positives = 128/204 (62%), Gaps = 11/204 (5%)
Frame = +1
Query: 235 VEKYRPKRLDDLVSHDDIIKTINQFMKENQLPHLLFYGPPGTGKTSTILACAKQMYTPQQ 414
VEKYRPKRLDD+V ++ + + + ++ +PHL+F+GPPGTGKTS I A A +++ +
Sbjct: 7 VEKYRPKRLDDIVHQNNAVMMLKEVVRTKNMPHLIFHGPPGTGKTSAINALAHELFGKEN 66
Query: 415 FSSMVLELNASDDRGIGIVRGQILSF-----------ASTRTIFKAGPKLIILDEADAMT 561
S VLELNASDDRGI +VR +I ++ + T+ + + KL++LDEAD MT
Sbjct: 67 ISERVLELNASDDRGINVVREKIKAYTRISISKNKIHSETKEVLPSW-KLVVLDEADMMT 125
Query: 562 NDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVT 741
DAQ+ALRRIIE Y+ RF +ICNY+ KI + SRC+ +RF + + +L I
Sbjct: 126 EDAQSALRRIIEIYSNVTRFILICNYIHKISDPIFSRCSCYRFQSIPINIKKEKLLYICQ 185
Query: 742 TEGVKMSEGGMKALLTWSGGDMXK 813
E + + + ++ ++ + GD+ +
Sbjct: 186 NENIDIVDDALEKIIETTEGDLRR 209
>UniRef50_Q7R657 Cluster: GLP_574_161256_160291; n=1; Giardia
lamblia ATCC 50803|Rep: GLP_574_161256_160291 - Giardia
lamblia ATCC 50803
Length = 321
Score = 163 bits (395), Expect = 6e-39
Identities = 77/197 (39%), Positives = 126/197 (63%), Gaps = 6/197 (3%)
Frame = +1
Query: 235 VEKYRPKRLDDLVSHDDIIKTINQFMKENQLPHLLFYGPPGTGKTSTILACAKQMYTPQQ 414
VEKYRP + +VSH+ II I ++E +LPH++FYG PGTGKT+ I A +++
Sbjct: 5 VEKYRPSTTEGVVSHELIIAAIRALIREGRLPHMIFYGKPGTGKTTLIKALMNELFG-DA 63
Query: 415 FSSMVLELNASDDRGIGIVRGQILSFASTRTIFKAGP------KLIILDEADAMTNDAQN 576
S+ VLELNASDD G+ ++R + F ++ ++ K++I+DE D M++ AQ
Sbjct: 64 VSTHVLELNASDDSGVDVIRQTVKGFVTSGSVLSQQSSSATKFKIVIMDECDHMSSVAQA 123
Query: 577 ALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVK 756
+LRR++E ++ RFC++CNY K++PA+ SRC FRF P+ ++ + L++I EG++
Sbjct: 124 SLRRLMETSIKHARFCLLCNYPEKLLPAILSRCCAFRFLPVPRESCLLMLEKIADAEGMQ 183
Query: 757 MSEGGMKALLTWSGGDM 807
M+ G + A+ + GD+
Sbjct: 184 MAPGALAAIHAVTDGDL 200
>UniRef50_A0EG83 Cluster: Chromosome undetermined scaffold_95, whole
genome shotgun sequence; n=2; Oligohymenophorea|Rep:
Chromosome undetermined scaffold_95, whole genome
shotgun sequence - Paramecium tetraurelia
Length = 384
Score = 162 bits (394), Expect = 8e-39
Identities = 86/192 (44%), Positives = 118/192 (61%), Gaps = 1/192 (0%)
Frame = +1
Query: 235 VEKYRPKRLDDLVSHDDIIKTINQFMKENQLPHLLFYGPPGTGKTSTILACAKQMYTPQQ 414
+EKYRPK LD++ + DI+ + K LP+++ GPPG GKTS++L A+Q+
Sbjct: 8 LEKYRPKTLDEVHGNSDIVDKLRAIAKMGNLPNIILVGPPGIGKTSSVLCLARQILG-DS 66
Query: 415 FSSMVLELNASDDRGIGIVRGQILSFASTRTIFKAGP-KLIILDEADAMTNDAQNALRRI 591
VLELNASDDRGI VR QI FA + + G K++ILDEAD++T AQ ALR I
Sbjct: 67 IKESVLELNASDDRGIETVREQIKGFAQKKVNLQEGQHKIVILDEADSLTEGAQQALRMI 126
Query: 592 IEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGG 771
I Y+ + RF + CN K+I A+QSRC RF L + +I RL EI++ E V ++ G
Sbjct: 127 ISDYSTSTRFVLSCNDSTKLIDAIQSRCCILRFNRLGEKEIRDRLLEIISQESVTYTKDG 186
Query: 772 MKALLTWSGGDM 807
+ AL + GDM
Sbjct: 187 LDALTFTAEGDM 198
>UniRef50_A3ABV4 Cluster: Putative uncharacterized protein; n=1;
Oryza sativa (japonica cultivar-group)|Rep: Putative
uncharacterized protein - Oryza sativa subsp. japonica
(Rice)
Length = 389
Score = 162 bits (393), Expect = 1e-38
Identities = 92/189 (48%), Positives = 118/189 (62%), Gaps = 13/189 (6%)
Frame = +1
Query: 235 VEKYRPKRLDDLVSHDDIIKTINQFMKENQLPHLLFYGPPGTGKTSTILACAKQMYTPQQ 414
VEKYRP+ L D+ +H DI+ TI++ EN+LPHLL YGPPGTGK + Y P Q
Sbjct: 41 VEKYRPQSLGDVAAHRDIVDTIDRLTNENRLPHLLLYGPPGTGK--------HRQYWPLQ 92
Query: 415 FSSMVLELNASDDRGIGIVRGQILSFASTRTIF---KAGPKLIILDEADAMTNDAQNALR 585
S M ++RGI +VR QI FAS R++ K K+++LDEADAMT DAQ ALR
Sbjct: 93 GSCM-----GHNERGIDVVRQQIQDFASARSLSFGAKQSVKMVLLDEADAMTKDAQFALR 147
Query: 586 R----------IIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEI 735
R +IEK+T + RF +ICN++ KIIPALQSRCTRFRFAPL + + + +
Sbjct: 148 RATSSNLPHLTVIEKHTRSTRFALICNHVNKIIPALQSRCTRFRFAPLDGNHVRETSKPL 207
Query: 736 VTTEGVKMS 762
EG K S
Sbjct: 208 YHPEGAKQS 216
Score = 115 bits (277), Expect = 1e-24
Identities = 58/110 (52%), Positives = 76/110 (69%), Gaps = 10/110 (9%)
Frame = +1
Query: 514 KAGPKLIILDEADAMTNDAQNALRR----------IIEKYTENVRFCIICNYLGKIIPAL 663
K K+++LDEADAMT DAQ ALRR +IEK+T + RF +ICN++ KIIPAL
Sbjct: 214 KQSVKMVLLDEADAMTKDAQFALRRATSSNLPHLTVIEKHTRSTRFALICNHVNKIIPAL 273
Query: 664 QSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKALLTWSGGDMXK 813
QSRCTRFRFAPL + RL+ I+ +EG+ + +GG+ AL+ S GDM K
Sbjct: 274 QSRCTRFRFAPLDGTHVRERLKHIIQSEGLDVDDGGLTALVRLSNGDMRK 323
>UniRef50_Q86EA0 Cluster: Clone ZZD636 mRNA sequence; n=2;
Bilateria|Rep: Clone ZZD636 mRNA sequence - Schistosoma
japonicum (Blood fluke)
Length = 364
Score = 161 bits (391), Expect = 2e-38
Identities = 88/205 (42%), Positives = 126/205 (61%), Gaps = 14/205 (6%)
Frame = +1
Query: 235 VEKYRPKRLDDLVSHDDIIKTINQFMKENQLPHLLFYGPPGTGKTSTILACAKQMYTPQQ 414
VEKYRPK +D++ +++ + + + + LP+LLFYGPPGTGKTS ILA A+Q++ P
Sbjct: 28 VEKYRPKTIDEVAYQTEVVSVLRRCIGGSDLPNLLFYGPPGTGKTSLILALARQLFGP-L 86
Query: 415 FSSMVLELNASDDRGIGIVRGQILSFA------STRTIFKAGP--------KLIILDEAD 552
+S VLELNASD+RGI ++R ++ +FA S +G KLIILDEAD
Sbjct: 87 YSERVLELNASDERGIVVIREKVKAFAHVAVSSSGSNTNSSGSSSTNIPPYKLIILDEAD 146
Query: 553 AMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQE 732
+MT AQ ALRR +E RFC+ CNY+ +II + SRC +FRF PL + RL+
Sbjct: 147 SMTAPAQAALRRTMETEMRTTRFCLTCNYVTRIIEPITSRCAKFRFRPLDNEIARARLRY 206
Query: 733 IVTTEGVKMSEGGMKALLTWSGGDM 807
I E + +++ + LL+ GD+
Sbjct: 207 IADAENLSVTDETLDHLLSLCRGDL 231
>UniRef50_Q7QWA3 Cluster: GLP_177_25642_24674; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_177_25642_24674 - Giardia lamblia
ATCC 50803
Length = 322
Score = 160 bits (388), Expect = 4e-38
Identities = 80/192 (41%), Positives = 115/192 (59%), Gaps = 1/192 (0%)
Frame = +1
Query: 235 VEKYRPKRLDDLVSHDDIIKTINQFMKENQLPHLLFYGPPGTGKTSTILACAKQMYTPQQ 414
+E+YRP+ LD L+ + +I+ + F + LP++LF G PG GKT+ L A QM +
Sbjct: 7 IERYRPRTLDGLIGNPEILARLRYFAAQGNLPNILFAGGPGLGKTTIALCLANQMLGAHR 66
Query: 415 FSSMVLELNASDDRGIGIVRGQILSFASTRTIFKAG-PKLIILDEADAMTNDAQNALRRI 591
S LELNASD+R + +R ++ +FA + AG KL+ LDE DAMT AQ LRRI
Sbjct: 67 -SVAFLELNASDERNVSDIRAKVKTFAQKQVTLPAGIQKLVFLDECDAMTEAAQQVLRRI 125
Query: 592 IEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGG 771
++ T + RFC+ CN + K+I +QSRC R P Q +++ LQEI EGVK
Sbjct: 126 MDDETGSTRFCLACNNISKVIEPVQSRCCVLRIMPATQAELIKYLQEICEKEGVKSDTEA 185
Query: 772 MKALLTWSGGDM 807
+K L++ SG D+
Sbjct: 186 LKELISISGNDV 197
>UniRef50_A0RYC0 Cluster: Replication factor C small subunit; n=1;
Cenarchaeum symbiosum|Rep: Replication factor C small
subunit - Cenarchaeum symbiosum
Length = 311
Score = 158 bits (383), Expect = 2e-37
Identities = 83/192 (43%), Positives = 120/192 (62%), Gaps = 1/192 (0%)
Frame = +1
Query: 235 VEKYRPKRLDDLVSHDDIIKTINQFMKE-NQLPHLLFYGPPGTGKTSTILACAKQMYTPQ 411
VEKYRPK+L D+V +II +I +K ++PHLLF G G GKT+T L A+Q+ P
Sbjct: 3 VEKYRPKKLADVVDQKEIIGSIEALLKNAGEMPHLLFSGSAGVGKTTTALCIARQVLGPH 62
Query: 412 QFSSMVLELNASDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRI 591
+LELNASD+RGIG+VR ++ F++ + K+IILDEAD MT DAQ ALRR
Sbjct: 63 -IQDNLLELNASDERGIGMVRDKVKRFSNFAAFEEIPFKIIILDEADEMTADAQTALRRT 121
Query: 592 IEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGG 771
IE ++ RF I+ N + KII +QSRC ++F + + + + +L++I E + E G
Sbjct: 122 IEDASKICRFIIVANNISKIIDPIQSRCAVYKFTSIPEKEAMAQLKKIAKGEKASIDEEG 181
Query: 772 MKALLTWSGGDM 807
+K + S GD+
Sbjct: 182 LKEVYEQSEGDL 193
>UniRef50_Q8QN66 Cluster: EsV-1-224; n=1; Ectocarpus siliculosus
virus 1|Rep: EsV-1-224 - Ectocarpus siliculosus virus 1
Length = 324
Score = 157 bits (381), Expect = 3e-37
Identities = 76/192 (39%), Positives = 115/192 (59%), Gaps = 3/192 (1%)
Frame = +1
Query: 238 EKYRPKRLDDLVSHDDIIKTINQFMKENQLPHLLFYGPPGTGKTSTILACAKQMYTPQQF 417
EK+RP RL D+ +D +I+ + F P+++ +GPPG+GKTS+I++ AK +
Sbjct: 6 EKHRPTRLQDVSGNDHVIRALQSFTSMETTPNMILHGPPGSGKTSSIISMAKSFFGRTNI 65
Query: 418 SSMVLELNASDDRGIGIVRGQILSFASTRTIFKAGP---KLIILDEADAMTNDAQNALRR 588
S M LELNA D R IG +R QI F ++ KL+ILDEAD +T+ AQ ALR
Sbjct: 66 SIMTLELNAGDSRSIGTMRDQIHFFTRCSSVTDRSTNALKLVILDEADGLTSCAQRALRH 125
Query: 589 IIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEG 768
+IE + RFC+ CNY+ ++ L+SRCT F F+ + Q+ L+E+ E +++SE
Sbjct: 126 LIETTSGRARFCLCCNYISRLSSGLRSRCTSFSFSGIGNVQLAHTLREVARKEDLEISEE 185
Query: 769 GMKALLTWSGGD 804
G+ A++ GD
Sbjct: 186 GLNAVVKVCAGD 197
>UniRef50_Q7T2C9 Cluster: Rfc4 protein; n=34; Fungi/Metazoa
group|Rep: Rfc4 protein - Danio rerio (Zebrafish)
(Brachydanio rerio)
Length = 202
Score = 151 bits (365), Expect = 3e-35
Identities = 74/146 (50%), Positives = 104/146 (71%), Gaps = 7/146 (4%)
Frame = +1
Query: 235 VEKYRPKRLDDLVSHDDIIKTINQFMKENQLPHLLFYGPPGTGKTSTILACAKQMYTPQQ 414
VEKYRPK +D++ ++++ + + ++ LP+LLFYGPPGTGKTSTILA A+++Y P
Sbjct: 36 VEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELYGPDL 95
Query: 415 FSSMVLELNASDDRGIGIVRGQI-----LSFASTRTIFKAGP--KLIILDEADAMTNDAQ 573
+ VLELNASD+RGI +VR ++ L+ A TR K P K+IILDEAD+MT+ AQ
Sbjct: 96 YRQRVLELNASDERGIQVVREKVKRFAQLTVAGTRPDGKTCPPFKIIILDEADSMTSAAQ 155
Query: 574 NALRRIIEKYTENVRFCIICNYLGKI 651
ALRR +EK + RFC+ICNY+ ++
Sbjct: 156 AALRRTMEKESRTTRFCLICNYVSRL 181
>UniRef50_Q8SQM0 Cluster: REPLICATION FACTOR C (ACTIVATOR 1) 37kDa
SUBUNIT; n=2; Microsporidia|Rep: REPLICATION FACTOR C
(ACTIVATOR 1) 37kDa SUBUNIT - Encephalitozoon cuniculi
Length = 309
Score = 151 bits (365), Expect = 3e-35
Identities = 78/191 (40%), Positives = 119/191 (62%)
Frame = +1
Query: 235 VEKYRPKRLDDLVSHDDIIKTINQFMKENQLPHLLFYGPPGTGKTSTILACAKQMYTPQQ 414
V KY+P + D+V ++ ++ ++ ++ +PHLLF GPPGTGKT+ A+++ ++
Sbjct: 5 VNKYQPSEIQDIVGNEATMELVSLMIESRDMPHLLFTGPPGTGKTTCAKILARRLLGNKE 64
Query: 415 FSSMVLELNASDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRII 594
+LELNASD+RGI VR I SFA R + K+IILDEAD+MT AQ A+RR++
Sbjct: 65 G---LLELNASDERGIDTVRTTIKSFAQRR-VKDCEFKIIILDEADSMTTTAQQAMRRVM 120
Query: 595 EKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGM 774
E ++ RF +ICN KI +QSRC RF ++Q I+ RL+EI EG++++ +
Sbjct: 121 EIHSSECRFILICNVFTKIFEPIQSRCAILRFDRIEQSVILKRLKEISEGEGIRITAEAL 180
Query: 775 KALLTWSGGDM 807
++ S GDM
Sbjct: 181 DLVVELSDGDM 191
>UniRef50_Q7QUZ0 Cluster: GLP_61_35037_36092; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_61_35037_36092 - Giardia lamblia
ATCC 50803
Length = 351
Score = 147 bits (355), Expect = 4e-34
Identities = 79/182 (43%), Positives = 110/182 (60%), Gaps = 12/182 (6%)
Frame = +1
Query: 238 EKYRPKRLDDLVSHDDIIKTINQFMKENQLPHLLFYGPPGTGKTSTILACAKQMYTPQQF 417
EK+RP LD ++ D ++ + ++ +PH+L YGP GTGKT+ I A + + P+ +
Sbjct: 7 EKHRPLLLDRIMHQDHAVRAAKRCIESGNMPHMLLYGPAGTGKTTLIHAMMHEFFGPRFW 66
Query: 418 SSMVLELNASDDRGIGIVRGQILSFASTRTIFKAGP------------KLIILDEADAMT 561
+ V E NAS DRGI IVR +I S A RT+ P ++IILDEADA+T
Sbjct: 67 RARVSEFNASTDRGIKIVRERIKSIA--RTVIAVAPDDVKAVYPCPDFQVIILDEADALT 124
Query: 562 NDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVT 741
++Q ALRRIIE ++E RFCIICNY +II + SRC RF F+ L + I+ RL+ I
Sbjct: 125 RESQAALRRIIEDFSETTRFCIICNYPSQIIAPIVSRCARFAFSSLPRPLIIDRLESICY 184
Query: 742 TE 747
E
Sbjct: 185 AE 186
>UniRef50_O57852 Cluster: Replication factor C small subunit (RFC
small subunit) (Clamp loader small subunit) [Contains:
Pho RFC intein]; n=8; Euryarchaeota|Rep: Replication
factor C small subunit (RFC small subunit) (Clamp loader
small subunit) [Contains: Pho RFC intein] - Pyrococcus
horikoshii
Length = 855
Score = 140 bits (339), Expect = 4e-32
Identities = 69/155 (44%), Positives = 102/155 (65%)
Frame = +1
Query: 349 PPGTGKTSTILACAKQMYTPQQFSSMVLELNASDDRGIGIVRGQILSFASTRTIFKAGPK 528
P T+ LA +++++ + + LELNASD+RGI ++R ++ FA T+ I A K
Sbjct: 581 PTVVHNTTAALALSRELFG-ENWRHNFLELNASDERGINVIREKVKEFARTKPIGGASFK 639
Query: 529 LIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQD 708
+I LDEADA+T DAQ ALRR +E ++ NVRF + CNY KII +QSRC FRF PL+ +
Sbjct: 640 IIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDE 699
Query: 709 QIVPRLQEIVTTEGVKMSEGGMKALLTWSGGDMXK 813
I RL+ I EG++++E G++A+L + GDM +
Sbjct: 700 DIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRR 734
Score = 64.1 bits (149), Expect = 4e-09
Identities = 27/55 (49%), Positives = 37/55 (67%)
Frame = +1
Query: 211 IKTLFLRRVEKYRPKRLDDLVSHDDIIKTINQFMKENQLPHLLFYGPPGTGKTST 375
+K L VEKYRP+RLD++V + I+K + ++K +PHLLF GPPG GK T
Sbjct: 10 VKVLEKPWVEKYRPQRLDEIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKCLT 64
>UniRef50_A4I6D8 Cluster: Replication factor C, subunit 4, putative;
n=4; Trypanosomatidae|Rep: Replication factor C, subunit
4, putative - Leishmania infantum
Length = 360
Score = 136 bits (329), Expect = 6e-31
Identities = 85/224 (37%), Positives = 118/224 (52%), Gaps = 33/224 (14%)
Frame = +1
Query: 235 VEKYRPKRLDDLVSHDDIIKTINQFMKENQLPHLLFYGPPGTGKTSTILACAKQMY---- 402
VEKYRP+ + D+V + + I + KE LP+LL GPPGTGKT+++L A+ +
Sbjct: 9 VEKYRPQTVADIVGNTEAISRLQVIAKEGNLPNLLLCGPPGTGKTTSMLCLARDLLLQST 68
Query: 403 ------------TPQQFSSMVLELNASDDRGIGIVRGQILSFAST-----RTIFKAGP-- 525
T VLELNASDDRG+ +VR +I FA T R F G
Sbjct: 69 DTGSAGASPGGATKDILKDAVLELNASDDRGLDVVREKIKLFAQTKKTLPRKFFSTGEGV 128
Query: 526 ----------KLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRC 675
K+++LDEAD+MT AQ ALRR +E ++ RF CN +II +QSRC
Sbjct: 129 AKDDHVVHLHKIVLLDEADSMTPAAQQALRRTMELHSSTTRFAFACNNSSRIIEPIQSRC 188
Query: 676 TRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKALLTWSGGDM 807
RF L I+ RL ++ E V ++ G++ALL + GD+
Sbjct: 189 AVVRFKKLSDADILKRLVYVIQQENVSYTDDGLEALLYLAEGDL 232
>UniRef50_Q5UQ47 Cluster: Putative replication factor C small
subunit R395; n=1; Acanthamoeba polyphaga mimivirus|Rep:
Putative replication factor C small subunit R395 -
Mimivirus
Length = 319
Score = 134 bits (324), Expect = 3e-30
Identities = 73/194 (37%), Positives = 109/194 (56%), Gaps = 1/194 (0%)
Frame = +1
Query: 235 VEKYRPKRLDDLVSHDDIIKTINQFMKENQLPHLLFYGPPGTGKTSTILACAKQMYTPQQ 414
+EKYRP +DD++ D+I K IN F+++ + HL+ G PG GKTST+ AK++ +
Sbjct: 8 IEKYRPVNIDDVIIDDNISKQINIFLQDRENVHLIITGSPGVGKTSTVRCIAKELLG-ED 66
Query: 415 FSSMVLELNASDDRGIGIVRGQILSFASTRTIFKAGP-KLIILDEADAMTNDAQNALRRI 591
S LE+NA++DRG+ + I F + +F A K+I+LDEAD MT+ Q + +
Sbjct: 67 MSQGYLEINAAEDRGVRSISTIIPPFC--KKVFAANKSKIILLDEADIMTSKCQYDINNM 124
Query: 592 IEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGG 771
I+K+ +F CN KII +QS C RF L +QI L +I E + E G
Sbjct: 125 IKKFGRKTKFIFTCNDSSKIIEDIQSICRILRFKKLTDEQINQYLSKICVNEKIPYDEQG 184
Query: 772 MKALLTWSGGDMXK 813
++ + S GDM K
Sbjct: 185 LRTICYISNGDMRK 198
>UniRef50_Q6WI74 Cluster: Gp44; n=1; Vibrio phage KVP40|Rep: Gp44 -
Bacteriophage KVP40
Length = 318
Score = 125 bits (302), Expect = 1e-27
Identities = 71/178 (39%), Positives = 104/178 (58%), Gaps = 1/178 (0%)
Frame = +1
Query: 238 EKYRPKRLDDLVSHDDIIKTINQFMKENQLPHLLFYGP-PGTGKTSTILACAKQMYTPQQ 414
+KYRP+ + D V + + K + + +NQ+P++L PGTGKT+ A M
Sbjct: 14 QKYRPQSIKDCVLPERVRKLFQKMVDDNQIPNMLLCSSSPGTGKTTVARAVLADM----- 68
Query: 415 FSSMVLELNASDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRII 594
VL +NAS RGIG+V+ + +F ST + F PK +ILDEAD +T DAQ ALR +I
Sbjct: 69 -GYEVLFVNASSSRGIGLVQNDLPAFCSTVS-FSGNPKAVILDEADNLTPDAQKALRGLI 126
Query: 595 EKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEG 768
E+Y++NVRF + CNY KI+ ++SR F F K++Q+ Q IV + + EG
Sbjct: 127 EQYSKNVRFVLTCNYAQKILTPIRSRLQEFEFVYNKEEQLSCVKQMIVRSMQICKQEG 184
>UniRef50_Q8QKY2 Cluster: EsV-1-87; n=1; Ectocarpus siliculosus
virus 1|Rep: EsV-1-87 - Ectocarpus siliculosus virus 1
Length = 324
Score = 125 bits (301), Expect = 2e-27
Identities = 73/195 (37%), Positives = 108/195 (55%), Gaps = 4/195 (2%)
Frame = +1
Query: 235 VEKYRPKRLDDLVSHDDIIKTI-NQFMKENQLPHLLFYGPPGTGKTSTILACAKQMYTPQ 411
VEKYRP ++V + I + N K +PHLL GP G GKT + M P+
Sbjct: 7 VEKYRPLCFSEVVGNKKSISLLSNLAAKRVSIPHLLICGPSGCGKTVCVDILCNTMI-PE 65
Query: 412 QFSSMVLELNASDDRGIGIVRGQILSFASTRTIFKAGP---KLIILDEADAMTNDAQNAL 582
+ +L L++ D+RGI VR + +FA R + P K+++LDEAD+MT A AL
Sbjct: 66 NRGARMLRLSSFDERGIDNVRTTVKNFARGRVGTEPTPTIAKIVVLDEADSMTPGAFQAL 125
Query: 583 RRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMS 762
RRI++ Y+ RF I+CN KII +QSRC RF+ + Q+ R++++ GV+
Sbjct: 126 RRIMDVYSSTTRFIIVCNNSTKIIEPIQSRCAILRFSKVDDAQLRLRIRQVCDMAGVEYD 185
Query: 763 EGGMKALLTWSGGDM 807
GG+ AL + GD+
Sbjct: 186 PGGIGALACVADGDV 200
>UniRef50_A6R3U6 Cluster: Activator 1 37 kDa subunit; n=1;
Ajellomyces capsulatus NAm1|Rep: Activator 1 37 kDa
subunit - Ajellomyces capsulatus NAm1
Length = 231
Score = 123 bits (296), Expect = 6e-27
Identities = 65/115 (56%), Positives = 81/115 (70%), Gaps = 13/115 (11%)
Frame = +1
Query: 322 QLPHLLFYGPPGTGKTSTILACAKQMYTPQQFSSMVLELNASDDRGIGIVRGQILSFA-- 495
+LPH+LFYGPPGTGKTSTILA AK +Y PQ + S +LELNASD+RGI IVR +I FA
Sbjct: 3 KLPHMLFYGPPGTGKTSTILALAKSLYGPQLYRSRILELNASDERGISIVREKIKDFARM 62
Query: 496 ----------STRTIFKAGP-KLIILDEADAMTNDAQNALRRIIEKYTENVRFCI 627
+ R + P K+IILDEAD+MT DAQ+ALRR +E+Y+ RFC+
Sbjct: 63 QLSHPPLSDSAYREKYPCPPFKIIILDEADSMTQDAQSALRRTMERYSRITRFCL 117
>UniRef50_Q8TZC4 Cluster: Replication factor C small subunit (RFC
small subunit) (Clamp loader small subunit) [Contains:
Mkn RFC intein]; n=1; Methanopyrus kandleri|Rep:
Replication factor C small subunit (RFC small subunit)
(Clamp loader small subunit) [Contains: Mkn RFC intein]
- Methanopyrus kandleri
Length = 635
Score = 111 bits (267), Expect = 2e-23
Identities = 55/126 (43%), Positives = 83/126 (65%)
Frame = +1
Query: 436 LNASDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEKYTENV 615
L+ SD+RGI ++R ++ +FA TR + A K+I LDEAD +T D+Q ALRRI+E Y++
Sbjct: 385 LHNSDERGIDVIRTKVKNFARTRPMGGARFKIIFLDEADNLTRDSQQALRRIMEMYSDAC 444
Query: 616 RFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKALLTWS 795
RF + NY II +QSRC F+F L + I RL++I +EGV+++E + A++ S
Sbjct: 445 RFILAANYSSAIIDPIQSRCVVFKFTKLPESAIKERLRKIAESEGVEITEDALDAIVYVS 504
Query: 796 GGDMXK 813
GDM +
Sbjct: 505 EGDMRR 510
Score = 75.4 bits (177), Expect = 2e-12
Identities = 33/79 (41%), Positives = 53/79 (67%)
Frame = +1
Query: 211 IKTLFLRRVEKYRPKRLDDLVSHDDIIKTINQFMKENQLPHLLFYGPPGTGKTSTILACA 390
++ L + VEKYRPKRLDD+V + +++ + ++ +P+LLF GPPGTGKT+ L A
Sbjct: 6 LRVLEIPWVEKYRPKRLDDIVDQEHVVERLKAYVNRGDMPNLLFAGPPGTGKTTAALCLA 65
Query: 391 KQMYTPQQFSSMVLELNAS 447
++++ + + LELNAS
Sbjct: 66 RELF-GEHWRDNFLELNAS 83
>UniRef50_Q5GQL5 Cluster: Sliding clamp loader gp44; n=5; root|Rep:
Sliding clamp loader gp44 - Cyanophage phage S-PM2
Length = 315
Score = 107 bits (258), Expect = 2e-22
Identities = 60/175 (34%), Positives = 98/175 (56%), Gaps = 2/175 (1%)
Frame = +1
Query: 235 VEKYRPKRLDDLVSHDDIIKTINQFMKENQLPHLLFYGPPGTGKTSTILACAKQMYTPQQ 414
VE+YRPK +DD + I + F+++ ++P+LL G G GKT+ A +Q+
Sbjct: 9 VEQYRPKSVDDCILPTSIKNSFKAFVEQGEIPNLLLTGSAGVGKTTIAKAVCEQI----- 63
Query: 415 FSSMVLELNASDD-RGIGIVRGQILSFASTRTIFKAGP-KLIILDEADAMTNDAQNALRR 588
+ + +N SD+ R + VR ++ FA+T ++ P K++I+DEAD T+D Q +LR
Sbjct: 64 -GASYIVINGSDEGRFLDTVRNRVRQFATTVSLTSGAPHKVVIIDEADNTTHDVQLSLRT 122
Query: 589 IIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGV 753
+E++ N RF CN+ KII L SRCT F K+ + + + Q V +G+
Sbjct: 123 AVEEFHGNCRFIFTCNFQNKIIEPLHSRCTVIDFRIKKEQEQILQGQFFVRLKGI 177
>UniRef50_A3CUW4 Cluster: Replication factor C; n=2;
Methanomicrobiales|Rep: Replication factor C -
Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498
/ JR1)
Length = 336
Score = 107 bits (256), Expect = 4e-22
Identities = 61/213 (28%), Positives = 110/213 (51%), Gaps = 21/213 (9%)
Frame = +1
Query: 238 EKYRPKRLDDLVSHDDIIKTINQFMKENQLPHLLFYGPPGTGKTSTILACAKQMYTPQQF 417
E YRP+R DD++ D++++ + F +PH+L GP GTGKT+ + AK++Y + +
Sbjct: 5 EVYRPRRCDDIIGQDEVVRHLTAFSDSGSVPHMLISGPHGTGKTAAVECLAKRLYG-ENW 63
Query: 418 SSMVLELNASD---------------------DRGIGIVRGQILSFASTRTIFKAGPKLI 534
+ +A+D DR + + QI+ + ++ A KL+
Sbjct: 64 KANTTVFSATDLLGRGRSALETDERFSMIYRKDRSLIVNFKQIVKWYASMRPLDADFKLM 123
Query: 535 ILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQI 714
+ ++A +T +AQ ALRR +E+Y+ RF + IIPA+ SRC FAP++ +
Sbjct: 124 VFEDAHGLTFEAQQALRRTMERYSATCRFIFVTVRPSAIIPAIASRCLPLFFAPVESSLV 183
Query: 715 VPRLQEIVTTEGVKMSEGGMKALLTWSGGDMXK 813
+ RL+EI+ EG + + ++ + GD+ +
Sbjct: 184 LTRLEEILAAEGAAVPADDIDLIVYAAQGDLRR 216
>UniRef50_Q8SSG6 Cluster: DNA REPLICATION FACTOR (ACTIVATOR 1) 36
kDa SUBUNIT; n=1; Encephalitozoon cuniculi|Rep: DNA
REPLICATION FACTOR (ACTIVATOR 1) 36 kDa SUBUNIT -
Encephalitozoon cuniculi
Length = 283
Score = 104 bits (249), Expect = 3e-21
Identities = 74/192 (38%), Positives = 102/192 (53%)
Frame = +1
Query: 238 EKYRPKRLDDLVSHDDIIKTINQFMKENQLPHLLFYGPPGTGKTSTILACAKQMYTPQQF 417
EKYRPK D + + K I + P+LL YGPPGTGKT+ A Q
Sbjct: 5 EKYRPKSTDAFEGPEHL-KNILRNSSGRGHPNLLLYGPPGTGKTTFAHLLASQK------ 57
Query: 418 SSMVLELNASDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIE 597
LELNASD+RGI ++R +I +AST K +ILDE + +T+DAQ+ LRR+IE
Sbjct: 58 ----LELNASDERGISVIREKIKVYAST----LGKDKTVILDECENLTSDAQHCLRRVIE 109
Query: 598 KYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMK 777
+ N RF I NY KII L+SR +F P + +I L+ I + EG+ +
Sbjct: 110 D-SVNTRFIFITNYPSKIIGPLRSRLVSVKFTP-TESKI---LENIGSKEGLGYDKELYH 164
Query: 778 ALLTWSGGDMXK 813
+L G D+ +
Sbjct: 165 RILKLCGNDLRR 176
>UniRef50_A3IWH2 Cluster: DNA polymerase III gamma and tau subunits;
n=1; Cyanothece sp. CCY 0110|Rep: DNA polymerase III
gamma and tau subunits - Cyanothece sp. CCY 0110
Length = 373
Score = 102 bits (244), Expect = 1e-20
Identities = 66/208 (31%), Positives = 111/208 (53%), Gaps = 19/208 (9%)
Frame = +1
Query: 241 KYRPKRLDDLVSHDDIIKTINQFMKENQLPH-LLFYGPPGTGKTSTI------LACAKQM 399
KYRP+ ++DL D + K + + + E+ +P LL GP GTGKTST L C K +
Sbjct: 16 KYRPQSINDLTGQDSVQKVLTRLIAEDSVPQALLLSGPKGTGKTSTARIIAMSLNCEKGV 75
Query: 400 YTP-----------QQFSSM-VLELNASDDRGIGIVRGQILSFASTRTIFKAGPKLIILD 543
T Q +S+ V+EL+A+ G+ +R ++++ AS F A ++ I+D
Sbjct: 76 TTTPCGECKNCQAIQNGNSLDVVELDAASHNGVDDIR-KLVADASYAP-FSARTRVFIID 133
Query: 544 EADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPR 723
EA ++N AQNA + +E+ + +F + K++ ++SRC RF P+ Q ++ R
Sbjct: 134 EAHQLSNSAQNAFLKTLEEPNNHTKFLLATTEPHKMLETVRSRCLPLRFRPISQSEVAKR 193
Query: 724 LQEIVTTEGVKMSEGGMKALLTWSGGDM 807
L+EI EG + + ++A+ S G M
Sbjct: 194 LEEIAKNEGFSIDDSCLQAIARSSKGGM 221
>UniRef50_UPI0001554DFB Cluster: PREDICTED: similar to olfactory
receptor Olr396, partial; n=1; Ornithorhynchus
anatinus|Rep: PREDICTED: similar to olfactory receptor
Olr396, partial - Ornithorhynchus anatinus
Length = 208
Score = 101 bits (241), Expect = 3e-20
Identities = 43/83 (51%), Positives = 64/83 (77%)
Frame = +1
Query: 247 RPKRLDDLVSHDDIIKTINQFMKENQLPHLLFYGPPGTGKTSTILACAKQMYTPQQFSSM 426
RPKR+D++ ++++ + + ++ LP+LLFYGPPGTGKTSTILA A+++Y P+ F
Sbjct: 117 RPKRVDEVAYQEEVVAVLRRSLEGADLPNLLFYGPPGTGKTSTILAAARELYGPELFRQR 176
Query: 427 VLELNASDDRGIGIVRGQILSFA 495
VLELNASD+RGI +VR ++ +FA
Sbjct: 177 VLELNASDERGIQVVREKVKTFA 199
>UniRef50_Q8TUC8 Cluster: Replication factor C subunit; n=4;
Methanosarcinaceae|Rep: Replication factor C subunit -
Methanosarcina acetivorans
Length = 344
Score = 100 bits (239), Expect = 5e-20
Identities = 66/218 (30%), Positives = 120/218 (55%), Gaps = 27/218 (12%)
Frame = +1
Query: 241 KYRPKRLDDLVSHDDIIKTINQFMKENQLPHLLFYGPPGTGKTSTILACAKQMYTPQQFS 420
KYR + L+ ++ ++ ++T+++ ++ LPHL+FYGP +GKT+ LA A+++Y + +
Sbjct: 11 KYRAETLEGMLGNEHAVRTLSELLQSGTLPHLIFYGPENSGKTTASLALARELYG-ETWK 69
Query: 421 SMVLELNASD--DRGIG-IVRGQ----ILSFASTRTIFK--------------------A 519
+ + NASD D+G +VR + IL + I+K A
Sbjct: 70 NNFVYFNASDFFDQGKRYLVRDKRFVRILGTDDPKKIYKSVIDIFKEVVNEYAGMASIDA 129
Query: 520 GPKLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPL 699
K+I +D A+++++DAQ+ALRRI+EKY+ RF + K+I L+SR + FA +
Sbjct: 130 DYKIIYIDNAESLSSDAQHALRRIMEKYSSTCRFILSTTRPSKLISPLRSRGLQVFFAYV 189
Query: 700 KQDQIVPRLQEIVTTEGVKMSEGGMKALLTWSGGDMXK 813
+ L+ I E +K+S+G + A+L + G++ +
Sbjct: 190 PDSLLKTHLERIALAEKLKLSDGALDAVLYLAKGNVAR 227
>UniRef50_Q4Q084 Cluster: Replication factor C, subunit 5, putative;
n=4; Trypanosomatidae|Rep: Replication factor C, subunit
5, putative - Leishmania major
Length = 351
Score = 97.9 bits (233), Expect = 3e-19
Identities = 70/226 (30%), Positives = 113/226 (50%), Gaps = 33/226 (14%)
Frame = +1
Query: 235 VEKYRPKRLDDLVSHDDIIKTINQFMKENQLPHLLFYGPPGTGKTSTILACAKQMYTPQQ 414
V++YRPK L D+ + ++ + + + K LPHLLFYGP G+GK + +A ++Y P
Sbjct: 4 VDRYRPKTLKDVELYPELKEVLTRLSKAQDLPHLLFYGPSGSGKKTRAMAMLHEIYGPSV 63
Query: 415 FSSMV-----------------------LELNASD----DRGI--GIVR--GQILSFAST 501
FS + +++N SD DR I ++R Q + ST
Sbjct: 64 FSVRLEHKSVQVSDSKVVDIATLSSPHHIDINPSDAGNYDRAIVMQMIREIAQTVPLHST 123
Query: 502 RTIFKAGP-KLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCT 678
K P K+++L+E D M+ AQ+ALRR +EKY R ++CN ++IP L+SRC
Sbjct: 124 SGNRKNVPYKVVVLNEVDKMSRTAQHALRRTMEKYMNTCRLFLLCNSTSRLIPPLRSRCL 183
Query: 679 RFRFAPLKQDQIVPRLQEIVTTEGVKM-SEGGMKALLTWSGGDMXK 813
R A +D + +Q + EG + S + +L S G++ +
Sbjct: 184 GIRVASHSKDNLKLAVQRVCEGEGRPLPSVAFLNSLALRSDGNLRR 229
>UniRef50_Q98RV1 Cluster: Replication factor C 37 KD subunit; n=1;
Guillardia theta|Rep: Replication factor C 37 KD subunit
- Guillardia theta (Cryptomonas phi)
Length = 290
Score = 97.5 bits (232), Expect = 4e-19
Identities = 55/149 (36%), Positives = 85/149 (57%)
Frame = +1
Query: 307 FMKENQLPHLLFYGPPGTGKTSTILACAKQMYTPQQFSSMVLELNASDDRGIGIVRGQIL 486
F K N P+ L YG GTGKT T+ K + S +L+LNAS + I I+R +I
Sbjct: 16 FFKINSFPNFLLYGSSGTGKTFTVENFLKTARN-KNIISRILKLNASQNNSISIIRNKIK 74
Query: 487 SFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQ 666
F + +I K++++DEAD ++ +Q ALRRIIEK++ + RF +ICNY +II LQ
Sbjct: 75 IFCRS-SIQSKKLKVVVIDEADLLSVISQEALRRIIEKFSLSSRFILICNYPTRIIEPLQ 133
Query: 667 SRCTRFRFAPLKQDQIVPRLQEIVTTEGV 753
SR F+ L + I+ ++ + + +
Sbjct: 134 SRFILFKIENLNFENIIKLIKFYILKKNI 162
>UniRef50_Q2FQR4 Cluster: Replication factor C large subunit; n=2;
Methanomicrobiales|Rep: Replication factor C large
subunit - Methanospirillum hungatei (strain JF-1 / DSM
864)
Length = 483
Score = 97.1 bits (231), Expect = 5e-19
Identities = 64/194 (32%), Positives = 101/194 (52%), Gaps = 4/194 (2%)
Frame = +1
Query: 238 EKYRPKRLDDLVSHDDIIKTINQFMKE--NQLPHLLFYGPPGTGKTSTILACAKQMYTPQ 411
EKYRP+ L+++V + + + ++++ + P L+ YG PG GKTS+ A A M
Sbjct: 5 EKYRPRHLNEMVGNREALHQMSEWATRWTVESPPLILYGKPGIGKTSSAWALAHDM---- 60
Query: 412 QFSSMVLELNASDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRI 591
+ V+ELNASD R ++ AST ++ A KLIILDEAD + +A R
Sbjct: 61 --NWEVVELNASDQRTKAVIEKVAGGSASTGSLTGAARKLIILDEADNLQGNADRGGARA 118
Query: 592 IEKYTENVR--FCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSE 765
I + R +I N L + +++ CT+ +F L +VPRL+EI + E + S
Sbjct: 119 IAEVIRQARQPLILIANDLYGLDGTIRNLCTKVQFKALPAKSLVPRLREICSREQLTCSA 178
Query: 766 GGMKALLTWSGGDM 807
+ + SGGD+
Sbjct: 179 QALTDIAEQSGGDI 192
>UniRef50_Q64AI6 Cluster: Replication factor C subunit; n=1;
uncultured archaeon GZfos31B6|Rep: Replication factor C
subunit - uncultured archaeon GZfos31B6
Length = 416
Score = 95.9 bits (228), Expect = 1e-18
Identities = 62/217 (28%), Positives = 111/217 (51%), Gaps = 27/217 (12%)
Frame = +1
Query: 238 EKYRPKRLDDLVSHDDIIKTINQFMKENQLPHLLFYGPPGTGKTSTILACAKQMYTPQQF 417
EKYRP +D+V H+ I+ + ++ N LPHL+ YG TGK S + A+ +Y Q
Sbjct: 79 EKYRPHTFEDIVGHEHIVANLKHLVESNNLPHLVLYGAKNTGKMSAVFVLARALYGEQWE 138
Query: 418 SSMVLELNASD--DRG-------------IGI------------VRGQILSFASTRTIFK 516
+++ + +AS+ DRG IG V Q+++ +
Sbjct: 139 NNLAI-FDASNFFDRGKKYLVSDPRFARLIGTDDPKKIQKTVISVFKQVINEYAGMAALD 197
Query: 517 AGPKLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAP 696
+ ++I +D A+A++ DAQ+ALRRI+EK++ RF + +L ++IPAL+SR F
Sbjct: 198 SDFRMIFIDSAEALSMDAQHALRRIMEKHSRTCRFILSTTHLPRLIPALRSRGLNLFFDR 257
Query: 697 LKQDQIVPRLQEIVTTEGVKMSEGGMKALLTWSGGDM 807
+ ++ I E +++ G++A++ + GD+
Sbjct: 258 ASDATVAAHIRCIAEAERAPITDDGVQAIVYEADGDL 294
>UniRef50_Q4TFR9 Cluster: Chromosome undetermined SCAF4252, whole
genome shotgun sequence; n=1; Tetraodon
nigroviridis|Rep: Chromosome undetermined SCAF4252,
whole genome shotgun sequence - Tetraodon nigroviridis
(Green puffer)
Length = 331
Score = 95.1 bits (226), Expect = 2e-18
Identities = 52/120 (43%), Positives = 75/120 (62%), Gaps = 3/120 (2%)
Frame = +1
Query: 205 TTIKTLFLRRVEKYRPKRLDDLVSHDDIIKTINQFMKENQLPHLLFYGPPGTGKTSTILA 384
+T T L VEKYRP +LD +V +++ + + F +E +P+++ GPPGTGKT++IL
Sbjct: 11 STAGTYELPWVEKYRPLKLDQIVGNEETVSRLEVFAREGNVPNIIIAGPPGTGKTTSIL- 69
Query: 385 CAKQMYTPQQFSSMVLELNASDD--RGIGIVRGQILSFASTR-TIFKAGPKLIILDEADA 555
C + VLELNAS+D RGI +VR +I FA + T+ K K+IILDEAD+
Sbjct: 70 CLARALLGASMKDAVLELNASNDRHRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADS 129
>UniRef50_A5UMF4 Cluster: Replication factor C large subunit; n=2;
Methanobacteriaceae|Rep: Replication factor C large
subunit - Methanobrevibacter smithii (strain PS / ATCC
35061 / DSM 861)
Length = 492
Score = 93.5 bits (222), Expect = 6e-18
Identities = 64/198 (32%), Positives = 105/198 (53%), Gaps = 8/198 (4%)
Frame = +1
Query: 238 EKYRPKRLDDLVSHDD----IIKTINQFMKENQLPHLLFYGPPGTGKTSTILACAKQMYT 405
+KYRPK LD++V ++ I K ++ + N LL GPPG GKT+ A A++
Sbjct: 5 DKYRPKTLDEVVGNNKEKALIQKWVDNWKAGNPQKPLLLVGPPGIGKTTLAQAIAREF-- 62
Query: 406 PQQFSSMVLELNASDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAM--TNDAQNA 579
S +ELNASD R +++ I +S++++F KL+ILDE D + TND +
Sbjct: 63 -----SEYIELNASDKRSQDVIKSTIGESSSSKSLFGDDYKLLILDEVDGIHGTND-RGG 116
Query: 580 LRRI--IEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGV 753
+R I I K ++ I ++ K I +L+++C + + ++ I L++I EG+
Sbjct: 117 VRAIGDIIKKAKHPMILIANDFYSKRIASLKTKCDVLKMSKVRSPSINKLLKQIAINEGI 176
Query: 754 KMSEGGMKALLTWSGGDM 807
K + +K L S GDM
Sbjct: 177 KANPAALKELAKKSNGDM 194
>UniRef50_Q8Q084 Cluster: Replication factor C large subunit; n=4;
Methanosarcinaceae|Rep: Replication factor C large
subunit - Methanosarcina mazei (Methanosarcina frisia)
Length = 610
Score = 92.7 bits (220), Expect = 1e-17
Identities = 63/196 (32%), Positives = 101/196 (51%), Gaps = 7/196 (3%)
Frame = +1
Query: 238 EKYRPKRLDDLVSHDDIIKTINQFMKENQ--LPH---LLFYGPPGTGKTSTILACAKQMY 402
EKYRP+ L D+V + ++ + ++ +E Q +P ++ YGP G GKTS+ A A M
Sbjct: 14 EKYRPRTLGDVVGNRKAVQDLRKWAEEWQSGIPEKRAVILYGPAGIGKTSSAHALAGDME 73
Query: 403 TPQQFSSMVLELNASDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNAL 582
V+ELNASD R G++ S AS T F G +LIILDEAD + A
Sbjct: 74 WE------VIELNASDQRTAGVIEKIAGSAASMNTFF-GGKRLIILDEADNLHGTADRGG 126
Query: 583 RRIIEKYTENVR--FCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVK 756
R I ++ +I N + + P +++ C +F ++ +VP L+++ +EGV
Sbjct: 127 MRAISGIIKSTLQPIILIANDIYGLTPTVRNICLEIKFGSVQSRSMVPALKKVCESEGVS 186
Query: 757 MSEGGMKALLTWSGGD 804
S+ + + +GGD
Sbjct: 187 CSQEAVLQIAENAGGD 202
>UniRef50_A0NIM4 Cluster: DNA-dependent DNA polymerase III,
gamma/tau subunits; n=2; Oenococcus oeni|Rep:
DNA-dependent DNA polymerase III, gamma/tau subunits -
Oenococcus oeni ATCC BAA-1163
Length = 608
Score = 91.9 bits (218), Expect = 2e-17
Identities = 61/210 (29%), Positives = 103/210 (49%), Gaps = 6/210 (2%)
Frame = +1
Query: 196 YFNTTIKTLFLRRVEKYRPKRLDDLVSHDDIIKTINQFMKENQLPHL-LFYGPPGTGKTS 372
Y N I ++ +YRP+ DLV I +T+ +K N++ H LF GP GTGKTS
Sbjct: 7 YLNVRILIMYKALYRQYRPRTFSDLVGQTVIAQTLENALKSNKVGHAYLFAGPRGTGKTS 66
Query: 373 TILACAKQMY-----TPQQFSSMVLELNASDDRGIGIVRGQILSFASTRTIFKAGPKLII 537
A+++ T ++ S ++E++A+ + G+ +R L A+ + K+ I
Sbjct: 67 VAKIFAREIEGIPDDTDRESFSDIIEIDAASNNGVDEIRN--LRDAANYAPIEYQFKIYI 124
Query: 538 LDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIV 717
+DE ++ A NAL + IE+ V+F + KI + SR RF F + DQIV
Sbjct: 125 IDEVHMLSTGAFNALLKTIEEPPAQVKFILATTEPQKIPATILSRVQRFDFHRIDVDQIV 184
Query: 718 PRLQEIVTTEGVKMSEGGMKALLTWSGGDM 807
RL+ ++ + + +K + S G +
Sbjct: 185 KRLEFVLDDQKIAYDPAALKIVANASDGGL 214
>UniRef50_Q2FUA8 Cluster: Replication factor C subunit; n=1;
Methanospirillum hungatei JF-1|Rep: Replication factor C
subunit - Methanospirillum hungatei (strain JF-1 / DSM
864)
Length = 331
Score = 90.2 bits (214), Expect = 5e-17
Identities = 62/216 (28%), Positives = 107/216 (49%), Gaps = 23/216 (10%)
Frame = +1
Query: 235 VEKYRPKRLDDLVSHDDIIKTINQFMKENQLPHLLFYGPPGTGKTSTILACAKQMY---- 402
+EKYRP D ++ + + + + + LPHL+ GPPGTGK++ + +++Y
Sbjct: 4 IEKYRPVTFDQILGQERVCEVLRRCAATKNLPHLVVSGPPGTGKSAAVEVTLRELYGDTW 63
Query: 403 ----TPQQFSSMV-------------LELNASDDRGIGIVRGQILSFASTRTIFKAGPKL 531
T + S ++ L L SD+ + + I S+AS R I A K+
Sbjct: 64 QDNVTIFRTSDLMERGKYALESDERFLHLYRSDESFLSNFKHIISSYASIRPI-NAEFKV 122
Query: 532 IILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQ 711
++ ++A A+++D Q+ALRR +E+Y+ RF +IP ++SRC F PL +D
Sbjct: 123 MLFEDAHALSHDIQHALRRTMERYSNTCRFIFCTTQASTLIPPIKSRCLPLFFTPLSRDI 182
Query: 712 IVPRLQEIVT--TEGVKMSEGGMKALLTWSGGDMXK 813
I L I E ++S+ ++ +GGD+ K
Sbjct: 183 IRDCLNTIQNDIPEPDRVSDDETGLIVAAAGGDLRK 218
>UniRef50_A3CTR4 Cluster: Replication factor C large subunit; n=1;
Methanoculleus marisnigri JR1|Rep: Replication factor C
large subunit - Methanoculleus marisnigri (strain ATCC
35101 / DSM 1498 / JR1)
Length = 454
Score = 90.2 bits (214), Expect = 5e-17
Identities = 63/195 (32%), Positives = 99/195 (50%), Gaps = 4/195 (2%)
Frame = +1
Query: 235 VEKYRPKRLDDLVSHDDIIKTINQFMKE--NQLPHLLFYGPPGTGKTSTILACAKQMYTP 408
VEKYRP+ L D+V + ++ I ++ ++ Q L+ YG PGTGKTS+ A A M
Sbjct: 4 VEKYRPQHLQDVVGNSGAVRLIYEWARDWSRQKKPLILYGKPGTGKTSSAYALANDM--- 60
Query: 409 QQFSSMVLELNASDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDA-QNALR 585
+ V+ELNASD R + + ++T ++ A KLI+LDEAD + A + +
Sbjct: 61 ---NWEVVELNASDQRTKAALERVAGAGSTTASLSGASRKLILLDEADNLHGQADRGGAK 117
Query: 586 RIIEKYTENVR-FCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMS 762
I+E + +I N + L++ +F L+ IVPRL++I EGV
Sbjct: 118 AIVEIIAAAQQPIILIANDYYSLTRELKAVTEPVQFRALQARSIVPRLRQICAAEGVACD 177
Query: 763 EGGMKALLTWSGGDM 807
+ + +GGDM
Sbjct: 178 PAALDDIANRAGGDM 192
>UniRef50_A2SRY4 Cluster: DNA polymerase III gamma/tau subunits-like
protein; n=1; Methanocorpusculum labreanum Z|Rep: DNA
polymerase III gamma/tau subunits-like protein -
Methanocorpusculum labreanum (strain ATCC 43576 / DSM
4855 / Z)
Length = 332
Score = 89.8 bits (213), Expect = 7e-17
Identities = 62/215 (28%), Positives = 108/215 (50%), Gaps = 22/215 (10%)
Frame = +1
Query: 235 VEKYRPKRLDDLVSHDDIIKTINQFMKENQLPHLLFYGPPGTGKTSTILACAKQMYTPQQ 414
+EKYRP ++++ + +K ++ + LPHLL G G GK+S + +++ YT
Sbjct: 4 IEKYRPTSFEEVIGQNSPVKQLSAYAALGNLPHLLVIGRSGCGKSSALEVFSRRFYTESA 63
Query: 415 F-SSMVLELN----------ASDDRGIGIVRGQILSFASTRTIFK--------AGP-KLI 534
++ VL ++ A +DR + + A+ + I + + P +LI
Sbjct: 64 AENTTVLPVSVMFSQGHTYFAENDRFAHLYQKNKSVLANFKYIVRWHASLKPLSAPFRLI 123
Query: 535 ILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQI 714
I D A +T DAQ ALRRI+E+Y++ RF + + L II ++SRC F P+ + +
Sbjct: 124 IFDGAGDLTKDAQAALRRIMEQYSQTCRFIFVTSSLASIIDPIRSRCVPLYFLPIDEATM 183
Query: 715 VPRLQEIVTTEGV--KMSEGGMKALLTWSGGDMXK 813
L+ ++ EG +SE + L+ S GD+ K
Sbjct: 184 RDYLKHVLEQEGCVGSISEENLDMLILGSAGDLRK 218
>UniRef50_Q4UIQ4 Cluster: Replication factor C subunit, putative;
n=3; Piroplasmida|Rep: Replication factor C subunit,
putative - Theileria annulata
Length = 351
Score = 89.0 bits (211), Expect = 1e-16
Identities = 62/211 (29%), Positives = 103/211 (48%), Gaps = 28/211 (13%)
Frame = +1
Query: 235 VEKYRPKRLDDLVSHDDIIKTINQFMKEN--QLPHLLFYGPPGTGKTSTILACAKQMY-- 402
++K+ PK L+D SH D+ + + + + ++ +LPH LFYGP G GK S ILA + ++
Sbjct: 4 IDKHCPKNLNDFTSHKDLSELLLKLVNKSHGELPHFLFYGPSGAGKKSRILATLRSVFGN 63
Query: 403 ----------TPQQFSSMVL------------ELNASDDRGIGIVRGQILSFASTRTIFK 516
+ + S +V+ EL D + + + S S F
Sbjct: 64 KVDKIKTDVLSYKDTSEVVVCQSEVHIQIPCQELGTRDRYIVQDIIRSLSSAPSASNFFS 123
Query: 517 AGP--KLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRF 690
GP + + ++AD +T +AQ ALRR +E Y +N R + L +I+P L+SRC R
Sbjct: 124 KGPSYRAFLFEDADTLTQEAQAALRRTMETYIKNARMFLHVRQLSRIMPPLRSRCLCIRV 183
Query: 691 APLKQDQIVPRLQEIVTTEGVKMSEGGMKAL 783
D+IV L++I +E + S+ + L
Sbjct: 184 RSHTNDEIVQILRKICNSEDITPSQASDQML 214
>UniRef50_Q2RMH2 Cluster: DNA polymerase III, subunits gamma and
tau; n=2; Clostridia|Rep: DNA polymerase III, subunits
gamma and tau - Moorella thermoacetica (strain ATCC
39073)
Length = 589
Score = 88.2 bits (209), Expect = 2e-16
Identities = 64/208 (30%), Positives = 101/208 (48%), Gaps = 19/208 (9%)
Frame = +1
Query: 241 KYRPKRLDDLVSHDDIIKTINQFMKENQLPHL-LFYGPPGTGKTST--ILACAKQMYTPQ 411
++RP+ ++V + I +T+ ++ +L H LF GP GTGKTST ILA A P+
Sbjct: 10 QWRPRTFAEVVGQEHITRTLRNALRTGRLVHAYLFCGPRGTGKTSTAKILARAINCLAPR 69
Query: 412 QF----------------SSMVLELNASDDRGIGIVRGQILSFASTRTIFKAGPKLIILD 543
+ S VLE++A+ +RGI +R I + K+ I+D
Sbjct: 70 EGEPCNECANCRRILAGNSLDVLEMDAASNRGIDEIRNLIEKIPLGPV--EGRYKVYIID 127
Query: 544 EADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPR 723
E +T +A NAL + +E+ + F + K++P + SRC RF F PL I R
Sbjct: 128 EVHMLTQEAFNALLKTLEEPPAHAVFILATTEPRKVLPTILSRCQRFDFHPLTVQAIAGR 187
Query: 724 LQEIVTTEGVKMSEGGMKALLTWSGGDM 807
LQE+ GV++ G + L + G +
Sbjct: 188 LQEVAAANGVEIEPGALSLLSRKAAGGL 215
>UniRef50_A7CST5 Cluster: DNA polymerase III, subunits gamma and
tau; n=1; Opitutaceae bacterium TAV2|Rep: DNA polymerase
III, subunits gamma and tau - Opitutaceae bacterium TAV2
Length = 388
Score = 87.0 bits (206), Expect = 5e-16
Identities = 59/210 (28%), Positives = 102/210 (48%), Gaps = 21/210 (10%)
Frame = +1
Query: 241 KYRPKRLDDLVSHDDIIKTINQFMKENQLPHL-LFYGPPGTGKTSTILACAKQM------ 399
K+RP+ DD+V D +++T+ + N++ H LF GP GTGKTST AK +
Sbjct: 12 KWRPQTFDDVVGQDHVVRTLKNAIARNRIAHAYLFVGPRGTGKTSTARIFAKALNCTDGP 71
Query: 400 ---YTPQQ---------FSSMVLELNASDDRGIGIVRG--QILSFASTRTIFKAGPKLII 537
+ P S V+E++ + + + +R + +A T+ FK + I
Sbjct: 72 KADFDPADPAVKSITDGTSMDVIEIDGASNNSVDQIRDLRDDVRYAPTQGKFK----IYI 127
Query: 538 LDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIV 717
+DE ++ A NAL + +E+ E+V+F + K++P + SRC RF P+ D I+
Sbjct: 128 IDEVHMLSTAAFNALLKTLEEPPEHVKFVFATTDVQKVLPTILSRCQRFDLKPIPDDLII 187
Query: 718 PRLQEIVTTEGVKMSEGGMKALLTWSGGDM 807
RL +I E + + + + + G M
Sbjct: 188 KRLAQIGADEKINATPEALACIARMADGGM 217
>UniRef50_Q8DT16 Cluster: DNA polymerase III, gamma/tau subunit;
n=44; Streptococcus|Rep: DNA polymerase III, gamma/tau
subunit - Streptococcus mutans
Length = 558
Score = 86.2 bits (204), Expect = 9e-16
Identities = 63/208 (30%), Positives = 97/208 (46%), Gaps = 19/208 (9%)
Frame = +1
Query: 241 KYRPKRLDDLVSHDDIIKTINQFMKENQLPHL-LFYGPPGTGKTSTILACAKQMYTPQQF 417
KYR + D++V + + KT+ Q + ++ H LF GP GTGKTS AK M P Q
Sbjct: 8 KYRSQTFDEMVGQEVVAKTLKQAVASKKISHAYLFSGPRGTGKTSAAKIFAKAMNCPHQA 67
Query: 418 SSM------------------VLELNASDDRGIGIVRGQILSFASTRTIFKAGPKLIILD 543
V+E++A+ + G+ +R + ST +A K+ I+D
Sbjct: 68 DGEPCNNCDICHDITNGSLEDVIEIDAASNNGVDEIRE--IRDKSTYAPSRATYKVYIID 125
Query: 544 EADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPR 723
E ++ A NAL + +E+ TENV F + L KI + SR RF F +K I
Sbjct: 126 EVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKTKAIKEH 185
Query: 724 LQEIVTTEGVKMSEGGMKALLTWSGGDM 807
L +I+ EG+ E + + + G M
Sbjct: 186 LADILKKEGLSFDEEALSLIARRAEGGM 213
>UniRef50_Q03ZG9 Cluster: DNA polymerase III, gamma/tau subunit;
n=1; Leuconostoc mesenteroides subsp. mesenteroides ATCC
8293|Rep: DNA polymerase III, gamma/tau subunit -
Leuconostoc mesenteroides subsp. mesenteroides (strain
ATCC 8293 /NCDO 523)
Length = 575
Score = 86.2 bits (204), Expect = 9e-16
Identities = 58/194 (29%), Positives = 97/194 (50%), Gaps = 6/194 (3%)
Frame = +1
Query: 244 YRPKRLDDLVSHDDIIKTINQFMKENQLPHL-LFYGPPGTGKTSTILACAKQM--YTPQQ 414
YRP+ DD+V I +T+ + Q H LF GP GTGKTS A+++ P+
Sbjct: 12 YRPRSFDDMVGQKIITQTLKNAIATQQTGHAYLFSGPRGTGKTSAAKIFAREVNGIAPET 71
Query: 415 FSSMV---LELNASDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALR 585
S + +E++A+ + G+ +R I A+ I ++ K+ I+DE +++ A NAL
Sbjct: 72 DDSQIPDIIEIDAASNNGVDEIRN-IRDGANYAPI-ESEYKIYIIDEVHMLSSGAFNALL 129
Query: 586 RIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSE 765
+ +E+ NV+F + KI + SR RF F + D I R+ EI+ EG+ +
Sbjct: 130 KTLEEPPANVKFILATTEPQKIPATILSRTQRFEFKRIDNDTIQARMAEILQKEGISFDD 189
Query: 766 GGMKALLTWSGGDM 807
+ + + G M
Sbjct: 190 DALHIIANVAEGGM 203
>UniRef50_Q8SRT8 Cluster: DNA REPLICATION FACTOR C SUBUNIT; n=1;
Encephalitozoon cuniculi|Rep: DNA REPLICATION FACTOR C
SUBUNIT - Encephalitozoon cuniculi
Length = 568
Score = 85.8 bits (203), Expect = 1e-15
Identities = 58/195 (29%), Positives = 98/195 (50%), Gaps = 5/195 (2%)
Frame = +1
Query: 238 EKYRPKRLDDLVSHDDIIKTINQFMK-ENQLPHLLFYGPPGTGKTSTILACAKQMYTPQQ 414
EKYRP + D++V + I+K + +++ + +L G PG GKT+T K +
Sbjct: 115 EKYRPSKRDEIVGNQGIVKQLEDYLQGRTKYKAVLLSGQPGIGKTTTAHVVCKSL----- 169
Query: 415 FSSMVLELNASDDRGIGIVRGQILSFASTRTIFKAG---PKLIILDEADAMTNDAQNALR 585
V+E NASD R + ++ +F S+++I + G K++I+DE D M++D
Sbjct: 170 -GLNVIEFNASDVRSKLEISNKVKAFVSSQSILRPGSSKSKVLIMDEVDGMSSDRGGIPE 228
Query: 586 RI-IEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMS 762
I I K T CI + I L S C RF QI+ R+++I+ EG K+
Sbjct: 229 LISIVKETVVPIICICNDRNNPKIRTLSSYCLDLRFRKPDARQILSRVKQILDMEGKKIP 288
Query: 763 EGGMKALLTWSGGDM 807
+G + +++ GD+
Sbjct: 289 DGLLNEIISRGAGDI 303
>UniRef50_A0B6D7 Cluster: Replication factor C large subunit; n=1;
Methanosaeta thermophila PT|Rep: Replication factor C
large subunit - Methanosaeta thermophila (strain DSM
6194 / PT) (Methanothrixthermophila (strain DSM 6194 /
PT))
Length = 467
Score = 85.8 bits (203), Expect = 1e-15
Identities = 66/199 (33%), Positives = 97/199 (48%), Gaps = 9/199 (4%)
Frame = +1
Query: 238 EKYRPKRLDDLVSHDDIIKTINQFMK--ENQLPH---LLFYGPPGTGKTSTILACAKQMY 402
EKYRPK LD ++ + + + + E P L+ YGPPG GKTS LA A +M
Sbjct: 6 EKYRPKNLDGILGNAKAVSELRAWAMAWEKGRPEVKCLILYGPPGVGKTSAALALASEM- 64
Query: 403 TPQQFSSMVLELNASDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAM--TND--A 570
+ELNASD R I++ I AS + F +L+ILDEAD + T D
Sbjct: 65 -----DWDYIELNASDQRTAEIIK-SIAGPASQVSTFSGRRRLVILDEADNLHGTYDRGG 118
Query: 571 QNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEG 750
A+ R+I+ T+ V +I N I L+ C +F ++ I L+EI +EG
Sbjct: 119 AAAILRVIKNATQPV--ILIANEYYNIEKPLRDACRGVQFRSIRAQTIASLLREICRSEG 176
Query: 751 VKMSEGGMKALLTWSGGDM 807
++ + + SGGD+
Sbjct: 177 IECEPEAVMHIAAMSGGDL 195
>UniRef50_Q9V2G4 Cluster: Replication factor C small subunit (RFC
small subunit) (Clamp loader small subunit) (PabRFC
small subunit) [Contains: Pab RFC-1 intein; Pab RFC-2
intein]; n=2; Euryarchaeota|Rep: Replication factor C
small subunit (RFC small subunit) (Clamp loader small
subunit) (PabRFC small subunit) [Contains: Pab RFC-1
intein; Pab RFC-2 intein] - Pyrococcus abyssi
Length = 1437
Score = 85.4 bits (202), Expect = 2e-15
Identities = 42/89 (47%), Positives = 61/89 (68%)
Frame = +1
Query: 367 TSTILACAKQMYTPQQFSSMVLELNASDDRGIGIVRGQILSFASTRTIFKAGPKLIILDE 546
T+ LA A++++ + + LELNASD+RGI ++R ++ FA T+ I A K+I LDE
Sbjct: 561 TTAALALARELFG-ENWRHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDE 619
Query: 547 ADAMTNDAQNALRRIIEKYTENVRFCIIC 633
ADA+T DAQ ALRR +E ++ NVRF + C
Sbjct: 620 ADALTQDAQQALRRTMEMFSSNVRFILSC 648
Score = 62.9 bits (146), Expect = 9e-09
Identities = 28/61 (45%), Positives = 40/61 (65%)
Frame = +1
Query: 631 CNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKALLTWSGGDMX 810
CNY KII +QSRC FRF PL + I RL+ I EG++++E G++A+L + GDM
Sbjct: 1256 CNYSSKIIEPIQSRCAIFRFRPLNDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMR 1315
Query: 811 K 813
+
Sbjct: 1316 R 1316
Score = 61.3 bits (142), Expect = 3e-08
Identities = 25/55 (45%), Positives = 37/55 (67%)
Frame = +1
Query: 211 IKTLFLRRVEKYRPKRLDDLVSHDDIIKTINQFMKENQLPHLLFYGPPGTGKTST 375
+K L VEKYRP++L+++V + I+K + ++K +PHLLF GPPG GK T
Sbjct: 10 VKVLEKPWVEKYRPQKLEEIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKCLT 64
>UniRef50_Q4A6Z5 Cluster: DNA polymerase III gamma and tau subunit;
n=1; Mycoplasma synoviae 53|Rep: DNA polymerase III
gamma and tau subunit - Mycoplasma synoviae (strain 53)
Length = 609
Score = 84.6 bits (200), Expect = 3e-15
Identities = 55/203 (27%), Positives = 98/203 (48%), Gaps = 14/203 (6%)
Frame = +1
Query: 241 KYRPKRLDDLVSHDDIIKTINQFMKENQLPH-LLFYGPPGTGKTSTILACAKQMYT---- 405
KYRP+ +++ D II+T++ + ++ H LF GP GTGKTST AK +
Sbjct: 9 KYRPQNFHEIIGQDHIIQTLDNVISSEKIAHAFLFAGPKGTGKTSTARVFAKALNCSHSE 68
Query: 406 ---------PQQFSSMVLELNASDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAM 558
P Q S ++E++A+ + G+ +R L + F++ K+ I+DE +
Sbjct: 69 VRSQICESCPNQNSGDIIEMDAASNTGVDEIRN--LKENVDQLPFESKYKIYIIDEVHML 126
Query: 559 TNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIV 738
+ A NAL + +E+ V F + + K+ + SR F F + + QIV +L+ I+
Sbjct: 127 SKSAFNALLKTLEEPPSYVIFILATTDVQKVPITILSRVQSFNFRRISEKQIVAQLENIL 186
Query: 739 TTEGVKMSEGGMKALLTWSGGDM 807
E + + + + S G +
Sbjct: 187 NKENISFEKEALMLIAQLSSGGL 209
>UniRef50_Q1Q394 Cluster: Similar to DNA polymerase III subunit
gamma/tau; n=1; Candidatus Kuenenia stuttgartiensis|Rep:
Similar to DNA polymerase III subunit gamma/tau -
Candidatus Kuenenia stuttgartiensis
Length = 558
Score = 84.6 bits (200), Expect = 3e-15
Identities = 59/210 (28%), Positives = 103/210 (49%), Gaps = 21/210 (10%)
Frame = +1
Query: 241 KYRPKRLDDLVSHDDIIKTINQFMKENQLPHL-LFYGPPGTGKTSTILACAKQMY----- 402
+YRP+ D+V I+KT+ ++ +++ H LF GP G GKTST +K +
Sbjct: 9 RYRPQTFSDIVGQAPIVKTLGNAIRTDRVAHAYLFAGPRGVGKTSTARILSKALNCVNGP 68
Query: 403 --TPQQFSSM-----------VLELNASDDRGIGIVRG--QILSFASTRTIFKAGPKLII 537
TP ++ VLE++ + +RGI +R Q + FA +R ++ + I
Sbjct: 69 TDTPCNVCNICQSISEGSDIDVLEIDGASNRGIDEIRNIRQNVGFAPSRARYR----IYI 124
Query: 538 LDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIV 717
+DE +T +A NAL + +E+ +V+F ++ +QSRC RF F + + I
Sbjct: 125 IDEVHMLTREAFNALLKTLEEPPSHVKFIFATTAANRLPETVQSRCQRFDFKNISVNDIE 184
Query: 718 PRLQEIVTTEGVKMSEGGMKALLTWSGGDM 807
L EI TEG ++ + + ++ G +
Sbjct: 185 KHLLEICKTEGKQIESAALHTIAKYAKGGL 214
>UniRef50_A2BZ44 Cluster: DNA polymerase, gamma and tau subunits;
n=5; Prochlorococcus marinus|Rep: DNA polymerase, gamma
and tau subunits - Prochlorococcus marinus (strain MIT
9515)
Length = 595
Score = 84.6 bits (200), Expect = 3e-15
Identities = 63/211 (29%), Positives = 102/211 (48%), Gaps = 21/211 (9%)
Frame = +1
Query: 238 EKYRPKRLDDLVSHDDIIKTINQFMKENQL-PHLLFYGPPGTGKTSTI---------LAC 387
+KYRP LD+LV + I T+ Q + ++ P LF GP GTGKTS+ L+C
Sbjct: 10 QKYRPSNLDELVGQEFISITLKQALISKKIAPAYLFNGPRGTGKTSSARIFAKSLNCLSC 69
Query: 388 AKQMYTP-------QQFSSM----VLELNASDDRGIGIVRGQILSFASTRTIFKAGPKLI 534
+ P +Q + ++E++A+ + G+ +R I T T +A K+
Sbjct: 70 EQPTANPCGKCELCKQIADGNALDIIEIDAASNTGVDNIREIIDGARFTPT--QARWKVY 127
Query: 535 ILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQI 714
++DE ++ A NAL + IE+ E V F + ++I +QSRC +F F + + I
Sbjct: 128 VIDECHMLSTAASNALLKTIEEPPERVVFILATTNPERVINTIQSRCQKFDFKRISSNTI 187
Query: 715 VPRLQEIVTTEGVKMSEGGMKALLTWSGGDM 807
L EI E +K + +K + S G M
Sbjct: 188 FHNLSEIANKESIKFEDQALKLIAKRSNGGM 218
>UniRef50_Q176Y6 Cluster: Replication factor C, 37kD-subunit,
putative; n=5; Eukaryota|Rep: Replication factor C,
37kD-subunit, putative - Aedes aegypti (Yellowfever
mosquito)
Length = 147
Score = 84.2 bits (199), Expect = 4e-15
Identities = 36/90 (40%), Positives = 59/90 (65%)
Frame = +1
Query: 235 VEKYRPKRLDDLVSHDDIIKTINQFMKENQLPHLLFYGPPGTGKTSTILACAKQMYTPQQ 414
+EKYRP++ +++V ++D + + F + P+++ GPPG GKT+TIL C ++ +
Sbjct: 30 IEKYRPQKFEEIVGNEDTVSRLGVFATQGNAPNIIIAGPPGVGKTTTIL-CLARILLGEN 88
Query: 415 FSSMVLELNASDDRGIGIVRGQILSFASTR 504
F VLELNAS++RGI +VR +I FA +
Sbjct: 89 FREAVLELNASNERGIDVVRNKIKMFAQQK 118
>UniRef50_A1RWU6 Cluster: Replication factor C large subunit; n=1;
Thermofilum pendens Hrk 5|Rep: Replication factor C
large subunit - Thermofilum pendens (strain Hrk 5)
Length = 413
Score = 84.2 bits (199), Expect = 4e-15
Identities = 65/210 (30%), Positives = 109/210 (51%), Gaps = 9/210 (4%)
Frame = +1
Query: 205 TTIKTLFLRRVEKYRPKRLDDLVSHDDIIKT----INQFMK-ENQLPHLLFYGPPGTGKT 369
+ +K + EKYRP R+ D+V +++ K IN ++K + L YGPPG+GKT
Sbjct: 2 SAVKVQLVPWTEKYRPARIADVVGNEEAKKKYVAWINSWVKGKPSKKAALLYGPPGSGKT 61
Query: 370 STILACAKQMYTPQQFSSMVLELNASDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEA 549
S + A AK+ FS ++ELNASD R ++ ++L +TR++ K+I+LDE
Sbjct: 62 SIVHATAKE------FSWELIELNASDVRTREALQQRLLGALNTRSVLGYSGKIILLDEV 115
Query: 550 DAM-TNDAQNALRRIIEKYTE-NVRFCIICN--YLGKIIPALQSRCTRFRFAPLKQDQIV 717
D + T + L+ I+E + N + N + K+ P L+ C F + + I+
Sbjct: 116 DGISTKEDAGGLQAIVELIEKSNWPIVLTANDPWDPKLRP-LRDLCELIEFKKIGKRDIM 174
Query: 718 PRLQEIVTTEGVKMSEGGMKALLTWSGGDM 807
L+ I + EGV+ S + A+ + GD+
Sbjct: 175 KVLENICSKEGVECSREVLSAIADNAKGDL 204
>UniRef50_A2SQR6 Cluster: Replication factor C large subunit; n=1;
Methanocorpusculum labreanum Z|Rep: Replication factor C
large subunit - Methanocorpusculum labreanum (strain
ATCC 43576 / DSM 4855 / Z)
Length = 476
Score = 84.2 bits (199), Expect = 4e-15
Identities = 62/195 (31%), Positives = 93/195 (47%), Gaps = 5/195 (2%)
Frame = +1
Query: 238 EKYRPKRLDDLVSHDDIIKTINQFMKE---NQLPHLLFYGPPGTGKTSTILACAKQMYTP 408
EKYRP L D++ + ++ I + K + P LLF G PG GKTS LA A+ M
Sbjct: 5 EKYRPMHLADILGNGSAVRQIVDWAKTWTPDSRP-LLFTGKPGIGKTSAALALARDM--- 60
Query: 409 QQFSSMVLELNASDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRR 588
VLELNASD R I+ + ++T ++F AG KLII+DE D + +A R
Sbjct: 61 ---DWEVLELNASDARTKTIIERVAGNSSTTTSLFGAGRKLIIIDEVDNLEGNADRGGAR 117
Query: 589 IIEKYTENVR--FCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMS 762
I + + +I N + +++ C F + + R++EI E +
Sbjct: 118 AIADILKEAKQPIVLIANDAYGVSDSIRRLCDPVPFRAIGVSTLQKRMKEICRFEDIACG 177
Query: 763 EGGMKALLTWSGGDM 807
E + A+ S GDM
Sbjct: 178 EDALSAIAESSAGDM 192
>UniRef50_O67707 Cluster: DNA polymerase III gamma subunit; n=3;
Aquifex aeolicus|Rep: DNA polymerase III gamma subunit -
Aquifex aeolicus
Length = 473
Score = 83.8 bits (198), Expect = 5e-15
Identities = 60/208 (28%), Positives = 103/208 (49%), Gaps = 19/208 (9%)
Frame = +1
Query: 241 KYRPKRLDDLVSHDDIIKTINQFMKENQLPHL-LFYGPPGTGKTST--ILACAKQMYTPQ 411
KYRPK +++ + ++ + +K +++ H LF GP G GKT+ ILA A P
Sbjct: 9 KYRPKFFREVIGQEAPVRILKNAIKNDRVAHAYLFAGPRGVGKTTIARILAKALNCKNPS 68
Query: 412 QFSSM----------------VLELNASDDRGIGIVRGQILSFASTRTIFKAGPKLIILD 543
+ ++E++A+ +RGI VR L A K K+ I+D
Sbjct: 69 KGEPCGECENCREIDRGVFPDLIEMDAASNRGIDDVRA--LKEAVNYKPIKGKYKVYIID 126
Query: 544 EADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPR 723
EA +T +A NAL + +E+ F + KI+P + SRC R F+ +++++++
Sbjct: 127 EAHMLTKEAFNALLKTLEEPPPRTVFVLCTTEYDKILPTILSRCQRIIFSKVRKEKVIEY 186
Query: 724 LQEIVTTEGVKMSEGGMKALLTWSGGDM 807
L++I EG++ EG ++ L S G M
Sbjct: 187 LKKICEKEGIECEEGALEVLAHASEGCM 214
>UniRef50_Q9QXI2 Cluster: Replication factor C subunit 2; n=8;
Eutheria|Rep: Replication factor C subunit 2 - Rattus
norvegicus (Rat)
Length = 216
Score = 83.0 bits (196), Expect = 8e-15
Identities = 39/91 (42%), Positives = 58/91 (63%)
Frame = +1
Query: 535 ILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQI 714
ILDEAD+MT+ AQ ALRR +E Y++ RF + CN KII +QSRC R+ L Q+
Sbjct: 1 ILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCGWLRYTKLTDAQV 60
Query: 715 VPRLQEIVTTEGVKMSEGGMKALLTWSGGDM 807
+ RL ++ E V ++ G++A++ + GDM
Sbjct: 61 LSRLMNVIEKEKVPYTDDGLEAIIFTAQGDM 91
>UniRef50_Q2NH88 Cluster: Replication factor C large subunit; n=1;
Methanosphaera stadtmanae DSM 3091|Rep: Replication
factor C large subunit - Methanosphaera stadtmanae
(strain DSM 3091)
Length = 534
Score = 82.6 bits (195), Expect = 1e-14
Identities = 56/201 (27%), Positives = 98/201 (48%), Gaps = 7/201 (3%)
Frame = +1
Query: 226 LRRVEKYRPKRLDDLVSHDDIIKTI----NQFMKENQLPHLLFYGPPGTGKTSTILACAK 393
++ VEKY PK+L D++ + I N++ K LL GPPG GKT+ K
Sbjct: 1 MKWVEKYAPKKLGDVLGNAKAKAQIEVWANKWSKGVPQKPLLLMGPPGIGKTTIAHLVGK 60
Query: 394 QMYTPQQFSSMVLELNASDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQ 573
+ + S +E+NASD R I++ I A TR++F +G KL+I+DE D ++
Sbjct: 61 EYF------SETIEVNASDKRSYDIIKSSIGEAAQTRSLFHSGYKLLIMDEVDGISGRDD 114
Query: 574 NALRRIIEKYTENVRFCIIC---NYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTT 744
+ R + + +N + II + K + +++ +C +F + + I +L+ I
Sbjct: 115 SGGARAVNETIKNSKQPIILMANDAYSKRLTSIKPKCQGIKFTKVHTNSINAQLKRICAR 174
Query: 745 EGVKMSEGGMKALLTWSGGDM 807
E ++ + L S GD+
Sbjct: 175 EDIEYDSEALYTLSKESNGDL 195
>UniRef50_Q1ATA7 Cluster: DNA polymerase III, subunits gamma and
tau; n=1; Rubrobacter xylanophilus DSM 9941|Rep: DNA
polymerase III, subunits gamma and tau - Rubrobacter
xylanophilus (strain DSM 9941 / NBRC 16129)
Length = 567
Score = 82.2 bits (194), Expect = 1e-14
Identities = 63/207 (30%), Positives = 105/207 (50%), Gaps = 20/207 (9%)
Frame = +1
Query: 241 KYRPKRLDDLVSHDDIIKTINQFMKENQLPHL-LFYGPPGTGKTST--ILA----CAKQM 399
++RP+ ++ + +++T+ + ++ ++ H LF GP GTGKTST +LA CA Q
Sbjct: 9 RWRPRTFGEIAGQEPVVRTLRRAIETGRVAHAYLFSGPRGTGKTSTAKVLAMGLNCA-QG 67
Query: 400 YTPQQF------------SSM-VLELNASDDRGIGIVRGQILSFASTRTIFKAGPKLIIL 540
TP+ SSM V+E++A+ +RGI +R L K+ I+
Sbjct: 68 PTPEPCGRCESCRSIVAGSSMDVIEMDAASNRGIDEIRE--LRDRVNLAPAAGRAKVYII 125
Query: 541 DEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVP 720
DE +T +A NAL +++E+ E+V F + K++P + SRC F F +V
Sbjct: 126 DEVHMLTTEAFNALLKMLEEPPEHVVFVLATTEKHKVLPTIISRCQSFDFRRPGVGTLVE 185
Query: 721 RLQEIVTTEGVKMSEGGMKALLTWSGG 801
+L EI EG++ + A+ SGG
Sbjct: 186 KLSEIARAEGIEAEREALTAIARASGG 212
>UniRef50_Q7RNS4 Cluster: Drosophila melanogaster BcDNA.LD06837,
putative; n=6; Plasmodium|Rep: Drosophila melanogaster
BcDNA.LD06837, putative - Plasmodium yoelii yoelii
Length = 363
Score = 82.2 bits (194), Expect = 1e-14
Identities = 60/223 (26%), Positives = 100/223 (44%), Gaps = 30/223 (13%)
Frame = +1
Query: 235 VEKYRPKRLDDLVSHDDIIKTINQFMKENQLPHLLFYGPPGTGKTSTILACAKQMY---- 402
+EKY P+ LD+L H DI + + N LPH++FYG PG GK++ I K+++
Sbjct: 17 LEKYAPRSLDELNIHKDITTRLKKLSVHNDLPHIIFYGSPGGGKSTRIDCLIKEIFKDEK 76
Query: 403 ---TPQQFSS------------------MVLELNASDDRGIGIVRGQILSFASTRTIFKA 519
P+ ++ EL D + + ++ S+ S+ + F
Sbjct: 77 IIRRPENITNTENKININVIQSNYHLELQCFELGTKDKIIVQNIIKELCSYKSSASFFSK 136
Query: 520 GP--KLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFA 693
P ++ + +A+ ++ AQ LRR +E Y N R + +L KII L+SRC R
Sbjct: 137 KPMYRIFVFKDAEFLSEGAQAGLRRTLETYIRNARVILHLEHLSKIIEPLKSRCICIRVP 196
Query: 694 PLKQDQIVPRLQEIVTTEGVKMSEGG---MKALLTWSGGDMXK 813
+++I L+ I E V S K L+ G ++ K
Sbjct: 197 LPTEEEIFTVLKNICDNENVSSSYNSTNFFKTLINIHGRNLRK 239
>UniRef50_A7HGU5 Cluster: DNA polymerase III, subunits gamma and
tau; n=3; Cystobacterineae|Rep: DNA polymerase III,
subunits gamma and tau - Anaeromyxobacter sp. Fw109-5
Length = 606
Score = 81.8 bits (193), Expect = 2e-14
Identities = 58/214 (27%), Positives = 105/214 (49%), Gaps = 19/214 (8%)
Frame = +1
Query: 223 FLRRVEKYRPKRLDDLVSHDDIIKTINQFMKENQLPH-LLFYGPPGTGKTSTILACAKQM 399
+L KYRP++ ++ +++T++ +K QL H LF GP G GKT+T AK +
Sbjct: 3 YLVLARKYRPQQFGEMSGQQHVVRTLSNALKTGQLAHAFLFTGPRGVGKTTTARLVAKAL 62
Query: 400 Y-------------TP-----QQFSSMVLELNASDDRGIGIVRGQILSFASTRTIFKAGP 525
TP + + V+E++A+ + G+ VR I+ R +
Sbjct: 63 NCEKGPTAEPCGACTPCVEIAEGRAVDVVEIDAASNNGVDNVR-DIVEAVKYRPA-RDRY 120
Query: 526 KLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQ 705
K+ ++DE ++ A NAL + +E+ E+V+F + + K+ + SRC RF F L
Sbjct: 121 KVFVVDEVHMLSTGAFNALLKTLEEPPEHVKFVLATTDVHKVPETILSRCQRFDFRRLTL 180
Query: 706 DQIVPRLQEIVTTEGVKMSEGGMKALLTWSGGDM 807
QI +L ++ EG++++ G + + + G M
Sbjct: 181 QQIADQLAKVAEAEGMRLAPGALALVARQAEGGM 214
>UniRef50_P40938 Cluster: Replication factor C subunit 3; n=64;
Eukaryota|Rep: Replication factor C subunit 3 - Homo
sapiens (Human)
Length = 356
Score = 81.8 bits (193), Expect = 2e-14
Identities = 59/203 (29%), Positives = 94/203 (46%), Gaps = 28/203 (13%)
Frame = +1
Query: 235 VEKYRPKRLDDLVSHDDIIKTINQFMKENQLPHLLFYGPPGTGKTSTILACAKQMY---- 402
V+KYRP L L H + + ++ PHLL YGP G GK + I+ +++Y
Sbjct: 5 VDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGVGV 64
Query: 403 -----------TPQQ--------FSSMVLELNASDDRGIG--IVRGQILSFASTR---TI 510
TP + S+ LE+N SD +++ + + A ++ T
Sbjct: 65 EKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQLETN 124
Query: 511 FKAGPKLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRF 690
+ K+++L E D +T DAQ+ALRR +EKY R + CN K+IP ++SRC R
Sbjct: 125 SQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAVRV 184
Query: 691 APLKQDQIVPRLQEIVTTEGVKM 759
+ I L + EG+ +
Sbjct: 185 PAPSIEDICHVLSTVCKKEGLNL 207
>UniRef50_Q9WZF2 Cluster: DNA polymerase III, gamma and tau subunit;
n=2; Thermotoga|Rep: DNA polymerase III, gamma and tau
subunit - Thermotoga maritima
Length = 478
Score = 81.4 bits (192), Expect = 2e-14
Identities = 59/208 (28%), Positives = 100/208 (48%), Gaps = 19/208 (9%)
Frame = +1
Query: 241 KYRPKRLDDLVSHDDIIKTINQFMKENQLPH-LLFYGPPGTGKTSTILACAKQMYTPQQF 417
KYRPK ++V+ D + K I +++N + H +F GP GTGKT+ AK + +
Sbjct: 7 KYRPKTFSEVVNQDHVKKAIIGAIQKNSVAHGYIFAGPRGTGKTTLARILAKSLNCENRK 66
Query: 418 SSM------------------VLELNASDDRGIGIVRGQILSFASTRTIFKAGPKLIILD 543
V+EL+A+ +RGI +R +I R + + K+ I+D
Sbjct: 67 GVEPCNSCRACREIDEGTFMDVIELDAASNRGIDEIR-RIRDAVGYRPM-EGKYKVYIID 124
Query: 544 EADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPR 723
E +T +A NAL + +E+ +V F + L K+ P + SRC F F + + I R
Sbjct: 125 EVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIISRCQVFEFRNIPDELIEKR 184
Query: 724 LQEIVTTEGVKMSEGGMKALLTWSGGDM 807
LQE+ EG+++ + + + G +
Sbjct: 185 LQEVAEAEGIEIDREALSFIAKRASGGL 212
>UniRef50_Q7UQ66 Cluster: DNA polymerase III gamma and tau subunits;
n=1; Pirellula sp.|Rep: DNA polymerase III gamma and tau
subunits - Rhodopirellula baltica
Length = 676
Score = 81.4 bits (192), Expect = 2e-14
Identities = 63/208 (30%), Positives = 102/208 (49%), Gaps = 19/208 (9%)
Frame = +1
Query: 241 KYRPKRLDDLVSHDDIIKTINQFMKENQLPHL-LFYGPPGTGKTSTILACAKQMYTP--- 408
+YRP+ LV D + + + ++ +++ H LF G G GKTST AK + P
Sbjct: 43 RYRPRDFTQLVGQDHVARALQGAIETSRVGHAYLFTGARGVGKTSTARIFAKALNHPDGP 102
Query: 409 -----------QQFSSM----VLELNASDDRGIGIVRGQILSFASTRTIFKAGPKLIILD 543
Q S V+E++ + +RGI +R + + R ++ K+ I+D
Sbjct: 103 TANPDSESDVAQAIDSGEDVDVIEIDGASNRGIDEIRS-LRANVGVRPS-RSRYKIYIID 160
Query: 544 EADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPR 723
E +T A NAL + +E+ E+V+F KI + SRC RF FAP++ D+IV R
Sbjct: 161 EVHMLTGAAFNALLKTLEEPPEHVKFIFCTTDPEKIPITVLSRCQRFDFAPVESDKIVQR 220
Query: 724 LQEIVTTEGVKMSEGGMKALLTWSGGDM 807
L+EIV E + + ++ L + G M
Sbjct: 221 LREIVEAEDNTVEDEALELLARRAAGSM 248
>UniRef50_O64301 Cluster: DNA polymerase accessory protein 44; n=8;
Viruses|Rep: DNA polymerase accessory protein 44 -
Bacteriophage RB69
Length = 320
Score = 81.4 bits (192), Expect = 2e-14
Identities = 56/192 (29%), Positives = 100/192 (52%), Gaps = 9/192 (4%)
Frame = +1
Query: 238 EKYRPKRLDDLVSHDDIIKTINQFMKENQLPHLLFYGP-PGTGKTSTILACAKQMYTPQQ 414
+KYRP +D+ + +T + + +LPH++ + P PGTGKT+ A +
Sbjct: 13 QKYRPSSIDECILPAYDHETFKSLVSKGKLPHIILHSPSPGTGKTTVAKALCNDINAEMM 72
Query: 415 FSSMVLELNASDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEAD-AMTNDAQNALRRI 591
F +N SD + I VRG + +FA + ++ + PK+I++DE D + ++Q LR
Sbjct: 73 F------VNGSDCK-IDFVRGPLTAFARSVSM-EGKPKVIVIDEFDRSGLAESQRHLRTF 124
Query: 592 IEKYTENVRFCIICNYLGKIIPALQSRCTRFRFA-PLKQDQI------VPRLQEIVTTEG 750
+E+++ N I N + II L+SRC F P ++D+I + R+ EI E
Sbjct: 125 MEEFSSNCSIIITANNIDGIIEPLRSRCRVIEFGRPTEEDKISMMKKMIHRMVEICKNEN 184
Query: 751 VKMSEGGMKALL 786
+++++ + A L
Sbjct: 185 IEIADMKVVAAL 196
>UniRef50_A3ZPF5 Cluster: DNA polymerase III gamma and tau subunits;
n=1; Blastopirellula marina DSM 3645|Rep: DNA polymerase
III gamma and tau subunits - Blastopirellula marina DSM
3645
Length = 618
Score = 80.6 bits (190), Expect = 4e-14
Identities = 62/208 (29%), Positives = 100/208 (48%), Gaps = 19/208 (9%)
Frame = +1
Query: 241 KYRPKRLDDLVSHDDIIKTINQFMKENQLPHL-LFYGPPGTGKTSTILACAKQMYTPQQF 417
+YRP+ ++LV + + + ++ ++ H LF G G GKTS+ AK + +
Sbjct: 24 RYRPQSFEELVGQSQVAQALKNAIERGRVGHAYLFTGARGVGKTSSARILAKALNCQRGP 83
Query: 418 SSM------------------VLELNASDDRGIGIVRGQILSFASTRTIFKAGPKLIILD 543
S+ VLE++ + +RGI +R Q+ S + R +A K+ I+D
Sbjct: 84 SATPCNECDICRSVTVGEDVDVLEIDGASNRGIEEIR-QLRSNVNIRPS-RARFKIYIID 141
Query: 544 EADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPR 723
E T +A NAL + +E+ E+V+F KI + SRC RF F ++ D+IV R
Sbjct: 142 EVHMFTKEAFNALLKTLEEPPEHVKFIFCTTDPEKIPITVLSRCQRFDFGGIRMDEIVTR 201
Query: 724 LQEIVTTEGVKMSEGGMKALLTWSGGDM 807
L IV EGV ++ L + G M
Sbjct: 202 LAYIVENEGVTAEPEALRLLARKANGSM 229
>UniRef50_A3V6X7 Cluster: Putative uncharacterized protein; n=1;
Loktanella vestfoldensis SKA53|Rep: Putative
uncharacterized protein - Loktanella vestfoldensis SKA53
Length = 232
Score = 80.6 bits (190), Expect = 4e-14
Identities = 55/192 (28%), Positives = 90/192 (46%), Gaps = 2/192 (1%)
Frame = +1
Query: 235 VEKYRPKRLDDLVSHDDIIKTI-NQFMKENQLPHLLFYGPPGTGKTSTILACAKQMYTPQ 411
VE++RP+ + DLV D + I +++ LL YG PGTGK+ + A+ +
Sbjct: 4 VERHRPRSVQDLVFADPTVAAIIDRYAYRRPTKPLLLYGAPGTGKSEALRLIAQTQFAQA 63
Query: 412 QFSSMVLELNASD-DRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRR 588
LN ++ D+ I +IL+ A + + P +I++DE D + R
Sbjct: 64 GLEIEDFTLNGAEYDKAI---FNKILNMAQIQMWPRGTPAIIVIDEIDEFEDKLPGKTRT 120
Query: 589 IIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEG 768
+E++ ++V+ NY+ KI PALQSR VPR I+T EG +S
Sbjct: 121 FVEQH-KSVQLLASTNYIKKIKPALQSRMRCVEVKKPSNANWVPRAHAILTAEGATVSHN 179
Query: 769 GMKALLTWSGGD 804
++ L+ GD
Sbjct: 180 DVQQLMQNFTGD 191
>UniRef50_A2RNZ7 Cluster: DNA polymerase III subunits gamma / tau;
n=3; Lactococcus lactis|Rep: DNA polymerase III subunits
gamma / tau - Lactococcus lactis subsp. cremoris (strain
MG1363)
Length = 553
Score = 80.6 bits (190), Expect = 4e-14
Identities = 62/208 (29%), Positives = 97/208 (46%), Gaps = 19/208 (9%)
Frame = +1
Query: 241 KYRPKRLDDLVSHDDIIKTINQFMKENQLPHL-LFYGPPGTGKTSTILACAKQMYTPQQF 417
KYR +R D++V + + T+ + +Q+ H LF GP GTGKTS AK + P Q
Sbjct: 9 KYRSQRFDEMVGQEVVATTLKNAIVNHQISHAYLFSGPRGTGKTSAAKIFAKAINCPNQV 68
Query: 418 SSM------------------VLELNASDDRGIGIVRGQILSFASTRTIFKAGPKLIILD 543
V+EL+A+ + G+ +R + ST +A K+ I+D
Sbjct: 69 DGEPCNNCFICDSITKGSLDDVIELDAASNNGVDEIRE--IRDKSTYAASQATYKVYIID 126
Query: 544 EADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPR 723
E ++ A NAL + +E+ TENV F + L KI + SR RF F + I
Sbjct: 127 EVHMLSTGAFNALLKTLEEPTENVVFVLATTELQKIPATIISRVQRFAFKSITTADIRTY 186
Query: 724 LQEIVTTEGVKMSEGGMKALLTWSGGDM 807
L +I+ EGV+ + + + + G M
Sbjct: 187 LGKILGDEGVEFEDKALDVIAKAAEGGM 214
>UniRef50_Q6MH32 Cluster: DNA polymerase III gamma and tau subunits;
n=1; Bdellovibrio bacteriovorus|Rep: DNA polymerase III
gamma and tau subunits - Bdellovibrio bacteriovorus
Length = 621
Score = 79.8 bits (188), Expect = 8e-14
Identities = 63/208 (30%), Positives = 100/208 (48%), Gaps = 19/208 (9%)
Frame = +1
Query: 241 KYRPKRLDDLVSHDDIIKTINQFMKENQLPH-LLFYGPPGTGKTSTILACAKQMYTP--Q 411
K+RP+ D+V + I +T++ +K +LPH LLF GP GTGKTS+ AK + P Q
Sbjct: 25 KWRPQSFTDVVGQNHITQTLSNALKNGRLPHALLFTGPRGTGKTSSARILAKALRCPNAQ 84
Query: 412 QF---------------SSM-VLELNASDDRGIGIVRGQILSFASTRTIFKAGPKLIILD 543
F SS+ V+E++ + + G+ +R + A + K K+ I+D
Sbjct: 85 NFVPCNDCYSCNEIAGGSSIDVIEIDGASNNGVDAIRELRDTVAFMPSSGKY--KIYIID 142
Query: 544 EADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPR 723
E ++ A NAL + +E+ +V F + + KI + SRC RF F + I R
Sbjct: 143 EVHMLSTSAFNALLKTLEEPPAHVVFIMATTEVHKIPQTILSRCQRFDFRRISTRSITER 202
Query: 724 LQEIVTTEGVKMSEGGMKALLTWSGGDM 807
L+ I EGV + + + G M
Sbjct: 203 LKLICDREGVTADDEALWVVARQGDGSM 230
>UniRef50_A5FRM9 Cluster: DNA polymerase III, subunits gamma and
tau; n=3; Dehalococcoides|Rep: DNA polymerase III,
subunits gamma and tau - Dehalococcoides sp. BAV1
Length = 570
Score = 79.8 bits (188), Expect = 8e-14
Identities = 60/207 (28%), Positives = 101/207 (48%), Gaps = 20/207 (9%)
Frame = +1
Query: 241 KYRPKRLDDLVSHDDIIKTINQFMKENQLPHL-LFYGPPGTGKTST--ILACAKQMYTPQ 411
K+RP+ L DLV + + T+ + ++ LF GP GTGKTST ILA A T Q
Sbjct: 12 KWRPQTLADLVGQEHVAHTLKNALSSGRIAQAYLFCGPRGTGKTSTGRILAKAVNCTTNQ 71
Query: 412 ----------------QFSSM-VLELNASDDRGIGIVRGQILSFASTRTIFKAGPKLIIL 540
+ SSM ++E++A+ + G+ +R + ++ A K+ I+
Sbjct: 72 GKGEPCNTCPMCLSITEGSSMDIIEIDAASNTGVDDIRELKEKVQYSPSL--ANYKVYII 129
Query: 541 DEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVP 720
DE ++N A NAL + +E+ V F + + K++P + SRC RF F + +
Sbjct: 130 DEVHMLSNSASNALLKTLEEPPPRVIFILATTEIHKVLPTIMSRCQRFDFHRVSLVDMTR 189
Query: 721 RLQEIVTTEGVKMSEGGMKALLTWSGG 801
+L +I EG+ + +K + +GG
Sbjct: 190 KLGKISLAEGINVEPEALKLIARSAGG 216
>UniRef50_A2E870 Cluster: Putative uncharacterized protein; n=1;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 346
Score = 79.8 bits (188), Expect = 8e-14
Identities = 52/217 (23%), Positives = 108/217 (49%), Gaps = 24/217 (11%)
Frame = +1
Query: 235 VEKYRPKRLDDLVSHDDIIKTINQFMKENQLPHLLFYGPPGTGKTSTILACAKQMYTPQQ 414
++++RP LDDL + + + PHLLF GPPG+GK + +LA ++++ +
Sbjct: 6 IDQHRPHNLDDLTIQSNANELLKSISGSFDFPHLLFCGPPGSGKKTRVLAFLRKLFNAEL 65
Query: 415 F-------------SSMVLELNASD--------DRGIG---IVRGQILSFASTRTIFKAG 522
+ +++ +SD D G+ ++ + A+++ +
Sbjct: 66 THLASGFRTIEEGDKKIEVQVTSSDFHIEITPADAGMNDRHVISYFLKDVAASQVVGGFS 125
Query: 523 PKLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLK 702
K+++++EA ++ AQ ALRR +EKY ++ R +I + L +II ++SRC R +
Sbjct: 126 IKVVVINEAHRLSKLAQQALRRTMEKYAKSCRIILIADSLSQIIEPVRSRCLVIRTPRIP 185
Query: 703 QDQIVPRLQEIVTTEGVKMSEGGMKALLTWSGGDMXK 813
I ++E+ + E ++S+ + L+ S G++ +
Sbjct: 186 SADIATAVKEVASKENFEISDEQLTDLVNESIGNLRR 222
>UniRef50_O29072 Cluster: Replication factor C large subunit; n=1;
Archaeoglobus fulgidus|Rep: Replication factor C large
subunit - Archaeoglobus fulgidus
Length = 479
Score = 79.8 bits (188), Expect = 8e-14
Identities = 66/206 (32%), Positives = 97/206 (47%), Gaps = 15/206 (7%)
Frame = +1
Query: 235 VEKYRPKRLDDLVSHDDIIKTINQFMK--ENQLPHLLFYGPPGTGKTSTILACAKQMYTP 408
VEKYRPK L+++V+ II + ++ K + LL GPPG GKTS LA A M
Sbjct: 4 VEKYRPKTLEEVVADKSIITRVIKWAKSWKRGSKPLLLAGPPGVGKTSLALALANTM--- 60
Query: 409 QQFSSMVLELNASDDRGIGIVRGQILSFASTRTIFKAGP---------KLIILDEADAMT 561
+ELNASD R ++ + A TI G KLIILDE D +
Sbjct: 61 ---GWEAVELNASDQRSWRVIERIVGEGAFNETISDEGEFLSSRIGKLKLIILDEVDNIH 117
Query: 562 ND----AQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQ 729
+ AL R+I++ +I N K+ P L++ C F L + Q+ L+
Sbjct: 118 KKEDVGGEAALIRLIKRKPAQP-LILIANDPYKLSPELRNLCEMINFKRLTKQQVARVLE 176
Query: 730 EIVTTEGVKMSEGGMKALLTWSGGDM 807
I EG+K+ + + + +GGD+
Sbjct: 177 RIALKEGIKVDKSVLLKIAENAGGDL 202
>UniRef50_Q8RDI6 Cluster: DNA polymerase III, gamma/tau subunits;
n=3; Thermoanaerobacter|Rep: DNA polymerase III,
gamma/tau subunits - Thermoanaerobacter tengcongensis
Length = 518
Score = 79.4 bits (187), Expect = 1e-13
Identities = 59/208 (28%), Positives = 97/208 (46%), Gaps = 19/208 (9%)
Frame = +1
Query: 241 KYRPKRLDDLVSHDDIIKTINQFMKENQLPHL-LFYGPPGTGKTST--ILACAKQMYTPQ 411
KYRPK ++V D I++T+ +K ++ H LF G GTGKTS I A A P+
Sbjct: 8 KYRPKSFSEVVGQDHIVRTLRNQIKMGRIGHAYLFTGTRGTGKTSVAKIFAKAVNCLNPK 67
Query: 412 QFSSM----------------VLELNASDDRGIGIVRGQILSFASTRTIFKAGPKLIILD 543
VLE++A+ + + VR S + ++ K K+ I+D
Sbjct: 68 DGEPCNSCEVCQAINTGTTMDVLEIDAASNNSVNDVRELRESVIYSPSLTKY--KVYIID 125
Query: 544 EADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPR 723
E ++ A NAL + +E+ +V F + K+ + SRC RF F + QI
Sbjct: 126 EVHMLSTGAFNALLKTLEEPPRHVIFILATTEPEKLPDTILSRCQRFDFKKIPTKQIAQN 185
Query: 724 LQEIVTTEGVKMSEGGMKALLTWSGGDM 807
L+ I G+++ + G++A+ + G M
Sbjct: 186 LERICQDSGIQIEQNGIRAIALYGNGSM 213
>UniRef50_A6DLE8 Cluster: DNA polymerase III, gamma and tau
subunits; n=1; Lentisphaera araneosa HTCC2155|Rep: DNA
polymerase III, gamma and tau subunits - Lentisphaera
araneosa HTCC2155
Length = 890
Score = 79.0 bits (186), Expect = 1e-13
Identities = 58/209 (27%), Positives = 102/209 (48%), Gaps = 20/209 (9%)
Frame = +1
Query: 241 KYRPKRLDDLVSHDDIIKTINQFMKENQLPHL-LFYGPPGTGKTST--ILACAKQMYTPQ 411
K+RP+ DDL D I T+ ++ ++ H +F G G GKT++ I A A TP+
Sbjct: 9 KWRPQTFDDLAGQDHITSTLTNAIRNQRVGHAYIFVGTRGIGKTTSARIFAKALNCETPR 68
Query: 412 ----------------QFSSM-VLELNASDDRGIGIVRGQILSFASTRTIFKAGPKLIIL 540
Q SS+ V+E++ + + + +R QI A T + K+ I+
Sbjct: 69 ADLNPCGQCTNCTEITQGSSIDVIEIDGASNNSVDDIR-QIREGAQY-TPARCPYKIFII 126
Query: 541 DEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVP 720
DE ++N A NAL + +E+ +++F + +++P + SRC R P+ ++ I
Sbjct: 127 DEVHMLSNAAWNALLKTLEEPPPHIKFLFATTEVHRVLPTILSRCQRLELKPIPRNVIAG 186
Query: 721 RLQEIVTTEGVKMSEGGMKALLTWSGGDM 807
RL+ I TE V + + + A+ + G M
Sbjct: 187 RLKHICETENVAIEDSAINAISRTANGGM 215
>UniRef50_A6LMU3 Cluster: DNA polymerase III, subunits gamma and
tau; n=1; Thermosipho melanesiensis BI429|Rep: DNA
polymerase III, subunits gamma and tau - Thermosipho
melanesiensis BI429
Length = 460
Score = 78.6 bits (185), Expect = 2e-13
Identities = 61/193 (31%), Positives = 93/193 (48%), Gaps = 19/193 (9%)
Frame = +1
Query: 241 KYRPKRLDDLVSHDDIIKTINQFMKENQLPHL-LFYGPPGTGKTST--ILACAKQMYTPQ 411
KYRPK+ +LV + K +K ++ H +F GP GTGKT+ ILA + PQ
Sbjct: 7 KYRPKKFLELVGQSHVKKLFVNSLKNKEISHAYIFAGPRGTGKTTVARILAKSLNCENPQ 66
Query: 412 QFSSM----------------VLELNASDDRGIGIVRGQILSFASTRTIFKAGPKLIILD 543
+ VLEL+A+ +RGI +R +I + T + K+ I+D
Sbjct: 67 EIEPCNMCNACISIDKGNFMDVLELDAASNRGIDEIR-KIRETVNYHTA-QGKYKVYIID 124
Query: 544 EADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPR 723
EA +T +A NAL + +E+ NV F + KI + SRC F + I+ R
Sbjct: 125 EAHMLTKEAFNALLKTLEEPPSNVVFILATTNPEKIPQTIISRCQVIDFKNISNKDIIKR 184
Query: 724 LQEIVTTEGVKMS 762
L+ + EG+K+S
Sbjct: 185 LEFVCENEGIKIS 197
>UniRef50_A3H683 Cluster: AAA ATPase, central region; n=1;
Caldivirga maquilingensis IC-167|Rep: AAA ATPase,
central region - Caldivirga maquilingensis IC-167
Length = 418
Score = 78.6 bits (185), Expect = 2e-13
Identities = 60/198 (30%), Positives = 97/198 (48%), Gaps = 8/198 (4%)
Frame = +1
Query: 238 EKYRPKRLDDLVSHDDIIKT----INQFMKENQLPHLLFYGPPGTGKTSTILACAKQMYT 405
EKYRP+ L D+V+ +++ KT I++++ + +L GPPGTGKT+ + A A
Sbjct: 10 EKYRPRSLKDIVNQEEVKKTMEDWISKWLSGKEKRAILLSGPPGTGKTTMVHALA----- 64
Query: 406 PQQFSSMVLELNASDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDA-QNAL 582
+ + E+NASD R +R I + ++F KL++ DE D + A Q +
Sbjct: 65 -YDYGLELYEMNASDVRTASRIRETIGKALTQGSLFGFRGKLVLFDEVDGINVRADQGGI 123
Query: 583 RRIIEKYTE-NVRFCIICN--YLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGV 753
I++ E V + N + K+ P L+ C + PLK I+ L+ I E V
Sbjct: 124 YEIVDIVKEAKVPIAMTANDPWDPKLRP-LRDICVVVQVKPLKNRDIIEMLRRICNAEKV 182
Query: 754 KMSEGGMKALLTWSGGDM 807
K E ++ + S GDM
Sbjct: 183 KCEEDALRLIAESSMGDM 200
>UniRef50_Q2JLX3 Cluster: DNA polymerase III, subunits gamma and
tau; n=2; Synechococcus|Rep: DNA polymerase III,
subunits gamma and tau - Synechococcus sp. (strain
JA-2-3B'a(2-13)) (Cyanobacteria bacteriumYellowstone
B-Prime)
Length = 779
Score = 78.2 bits (184), Expect = 2e-13
Identities = 57/208 (27%), Positives = 103/208 (49%), Gaps = 19/208 (9%)
Frame = +1
Query: 241 KYRPKRLDDLVSHDDIIKTINQFMKENQL-PHLLFYGPPGTGKTSTILACAKQMYTPQ-- 411
KYRP+R D+V +++T+ ++ ++ P LF GP GTGKTS+ AK + Q
Sbjct: 13 KYRPQRFADVVGQGAVVQTLANAIRLGRVAPAYLFCGPRGTGKTSSARILAKSLNCEQGP 72
Query: 412 -----QFSSM-----------VLELNASDDRGIGIVRGQILSFASTRTIFKAGPKLIILD 543
Q S VLE++A+ + G+ +R +++ A + + K+ ++D
Sbjct: 73 TPDPCQACSQCRAITAGASLDVLEIDAASNTGVDNIR-ELIERAQFAPV-NSRYKVYVID 130
Query: 544 EADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPR 723
E ++N A NAL + +E+ V F + +++P + SRC RF F + D +V
Sbjct: 131 ECHMLSNAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTIVSRCQRFDFRRIPLDDMVAH 190
Query: 724 LQEIVTTEGVKMSEGGMKALLTWSGGDM 807
L +I EG+ ++ ++ + S G +
Sbjct: 191 LGKIAAQEGIPITPEALQLVAQLSQGGL 218
>UniRef50_A4M5U6 Cluster: DNA polymerase III, subunits gamma and
tau; n=1; Petrotoga mobilis SJ95|Rep: DNA polymerase
III, subunits gamma and tau - Petrotoga mobilis SJ95
Length = 467
Score = 78.2 bits (184), Expect = 2e-13
Identities = 58/208 (27%), Positives = 103/208 (49%), Gaps = 19/208 (9%)
Frame = +1
Query: 241 KYRPKRLDDLVSHDDIIKTINQFMKENQLPHL-LFYGPPGTGKTST--ILACAKQMYTPQ 411
KYRPK D+++ ++K + + ++ H +F GP GTGKT+T ILA PQ
Sbjct: 8 KYRPKDFDEILGQPHVVKYFKNALNKQEVSHAYIFSGPRGTGKTTTARILAKVLNCKDPQ 67
Query: 412 QFSSM----------------VLELNASDDRGIGIVRGQILSFASTRTIFKAGPKLIILD 543
++ V+E++A+ +RGI +R I ++ R ++ K+ I+D
Sbjct: 68 GYNPCNKCENCVSINNNSFLDVIEMDAASNRGIDEIRN-IRDSSNYRPVY-GKYKVYIID 125
Query: 544 EADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPR 723
E +T +A NAL + +E+ +V F + L K+ + SR F L Q++IV
Sbjct: 126 EFHMLTREAFNALLKTLEEPPSHVIFILATTNLEKVPDTIISRAQIINFKNLGQNEIVEG 185
Query: 724 LQEIVTTEGVKMSEGGMKALLTWSGGDM 807
L+ I ++EG++ ++ + + G M
Sbjct: 186 LKNIASSEGIEYELDALEIIAKRAKGGM 213
>UniRef50_Q67TJ5 Cluster: DNA polymerase III gamma and tau subunits;
n=1; Symbiobacterium thermophilum|Rep: DNA polymerase
III gamma and tau subunits - Symbiobacterium
thermophilum
Length = 570
Score = 77.8 bits (183), Expect = 3e-13
Identities = 61/210 (29%), Positives = 101/210 (48%), Gaps = 21/210 (10%)
Frame = +1
Query: 241 KYRPKRLDDLVSHDDIIKTINQFMKENQLPHL-LFYGPPGTGKTST--ILACAKQMYTPQ 411
+YRP+R ++V + I +T+ + + +L H L GP GTGKT+ ILA A PQ
Sbjct: 9 EYRPQRFGEVVGQEHITRTLRNAIVQGRLHHAYLLSGPRGTGKTTVARILAKAVNCLNPQ 68
Query: 412 QFSSM----------------VLELNASDDRGIGIVRG--QILSFASTRTIFKAGPKLII 537
++E++A+ +RGI +R ++FA +K + I
Sbjct: 69 DGEPCNECEACRRITSGEALDLIEIDAASNRGIDEIRDLRDKVNFAPVELKYK----VYI 124
Query: 538 LDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIV 717
+DE +T A NAL + +E+ +V F + K+ + SRC F + L D+IV
Sbjct: 125 IDEVHMLTEPAFNALLKTLEEPPAHVLFVLATTEKQKLPITILSRCQAFDYRRLSADEIV 184
Query: 718 PRLQEIVTTEGVKMSEGGMKALLTWSGGDM 807
RL+E+ +G+K S + A+ + G M
Sbjct: 185 ARLREVCGKQGLKASPEALAAIARHADGGM 214
>UniRef50_A7HJR0 Cluster: DNA polymerase III, subunits gamma and
tau; n=1; Fervidobacterium nodosum Rt17-B1|Rep: DNA
polymerase III, subunits gamma and tau -
Fervidobacterium nodosum Rt17-B1
Length = 517
Score = 77.8 bits (183), Expect = 3e-13
Identities = 58/208 (27%), Positives = 99/208 (47%), Gaps = 19/208 (9%)
Frame = +1
Query: 241 KYRPKRLDDLVSHDDIIKTINQFMKENQLPHL-LFYGPPGTGKTSTILACAKQMYTPQ-Q 414
KYRPK D+V + I K + +K ++ H +F GP GTGKT+T AK + + Q
Sbjct: 7 KYRPKNFYDIVGQEHIKKLLTNALKLQKINHAYIFAGPRGTGKTTTARILAKSLNCEKNQ 66
Query: 415 FSSM-----------------VLELNASDDRGIGIVRGQILSFASTRTIFKAGPKLIILD 543
F V+EL+A+ +RGI +R T + K K+ I+D
Sbjct: 67 FGEPCNECTSCQAIDNGSHLDVIELDAASNRGIDEIRKIKEGVNFTPVMGKY--KVYIID 124
Query: 544 EADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPR 723
E +T +A NAL + +E+ +++ F + KI P + SRC F + ++ I+ +
Sbjct: 125 EVHMLTREAFNALLKTLEEPPQHIVFILATTNPEKIPPTIMSRCHVLEFRNISEENIISK 184
Query: 724 LQEIVTTEGVKMSEGGMKALLTWSGGDM 807
L+ + EG ++ +K + + G +
Sbjct: 185 LKSVCEKEGFDVTYEALKKIAKRAEGGL 212
>UniRef50_Q9V2G3 Cluster: Replication factor C large subunit; n=4;
Thermococcaceae|Rep: Replication factor C large subunit
- Pyrococcus abyssi
Length = 479
Score = 77.4 bits (182), Expect = 4e-13
Identities = 52/197 (26%), Positives = 99/197 (50%), Gaps = 6/197 (3%)
Frame = +1
Query: 235 VEKYRPKRLDDLVSHDDIIKTINQFMK---ENQLPH---LLFYGPPGTGKTSTILACAKQ 396
VEKYRP+RL ++++ +D I + +++ P LL GPPG+GKT+T+ A A+
Sbjct: 7 VEKYRPRRLSEIINQEDAISKVKAWIEAWLHGNPPKKKALLLAGPPGSGKTTTVYALAR- 65
Query: 397 MYTPQQFSSMVLELNASDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQN 576
+++ V+ELNASD+R + + + A T I K+I LDEAD +
Sbjct: 66 -----EYNFEVIELNASDERTYDKI-ARYVQAAYTMDILGKRRKIIFLDEADNIEPSGAP 119
Query: 577 ALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVK 756
+ ++I++ + + N+ ++ ++ R + L Q ++ L I+ EG+
Sbjct: 120 EIAKLIDRARNPI--IMAANHYWEVPKEIRDRAELVEYKRLTQRDVINALVRILKREGIT 177
Query: 757 MSEGGMKALLTWSGGDM 807
+ + + + + GD+
Sbjct: 178 VPKEVLVEIAKRASGDL 194
>UniRef50_Q7P6U1 Cluster: DNA polymerase III subunit gamma/tau; n=3;
Fusobacterium nucleatum|Rep: DNA polymerase III subunit
gamma/tau - Fusobacterium nucleatum subsp. vincentii
ATCC 49256
Length = 490
Score = 77.0 bits (181), Expect = 5e-13
Identities = 58/219 (26%), Positives = 100/219 (45%), Gaps = 21/219 (9%)
Frame = +1
Query: 214 KTLFLRRVEKYRPKRLDDLVSHDDIIKTINQFMKENQLPHL-LFYGPPGTGKTSTILACA 390
K + + KYRP ++ ++I+K++ +K + H LF GP G GKT+ A
Sbjct: 5 KKMHITLYRKYRPSSFSEVSGENEIVKSLKLSLKNKSMAHAYLFSGPRGVGKTTIARLIA 64
Query: 391 K--------------------QMYTPQQFSSMVLELNASDDRGIGIVRGQILSFASTRTI 510
K + +FS ++ E++A+ +R I +R L
Sbjct: 65 KGVNCLNLKENGEPCNECKNCKAINEGRFSDLI-EIDAASNRSIDEIRS--LKEKINYQP 121
Query: 511 FKAGPKLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRF 690
+ K+ I+DEA +T +A NAL + +E+ +V F + L KI+P + SRC R+ F
Sbjct: 122 VEGLKKVYIIDEAHMLTKEAFNALLKTLEEPPAHVMFILATTELEKILPTIISRCQRYDF 181
Query: 691 APLKQDQIVPRLQEIVTTEGVKMSEGGMKALLTWSGGDM 807
PL ++ L+ I+ E + M++ + S G M
Sbjct: 182 KPLDLKEMKAGLEHILKEENLSMTDDVYSVIYENSSGSM 220
>UniRef50_A0LM15 Cluster: DNA polymerase III, subunits gamma and
tau; n=1; Syntrophobacter fumaroxidans MPOB|Rep: DNA
polymerase III, subunits gamma and tau - Syntrophobacter
fumaroxidans (strain DSM 10017 / MPOB)
Length = 602
Score = 77.0 bits (181), Expect = 5e-13
Identities = 62/214 (28%), Positives = 104/214 (48%), Gaps = 19/214 (8%)
Frame = +1
Query: 223 FLRRVEKYRPKRLDDLVSHDDIIKTINQFMKENQLPH-LLFYGPPGTGKTSTILACAKQM 399
+L K+RP+ +++V + +T+ ++ +++ H LF G G GKTS AK +
Sbjct: 3 YLVIARKWRPQTFEEVVGQPHVTRTLQNAIRSSRIAHSYLFTGARGVGKTSIARILAKAL 62
Query: 400 -----YTP------------QQFSSM-VLELNASDDRGIGIVRGQILSFASTRTIFKAGP 525
TP +Q +++ VLE++ + +RGI VR ++ R K+
Sbjct: 63 NCETGVTPTPCNVCSNCTEIRQGNAVDVLEIDGASNRGIDSVR-ELRETVRYRPA-KSRY 120
Query: 526 KLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQ 705
K+ I+DE +T +A NAL + +E+ E+V F KI + SRC RF F +
Sbjct: 121 KVYIIDEVHMLTTEAFNALLKTLEEPPEHVVFIFATTEPHKIPATILSRCQRFDFRRIPS 180
Query: 706 DQIVPRLQEIVTTEGVKMSEGGMKALLTWSGGDM 807
+V L+ I E V +SEG + A+ + G M
Sbjct: 181 HMLVDHLRHIAAQEDVALSEGVLYAIAREADGSM 214
>UniRef50_Q56C06 Cluster: Gp44 clamp-loader subunit; n=1;
Enterobacteria phage RB43|Rep: Gp44 clamp-loader subunit
- Enterobacteria phage RB43
Length = 332
Score = 76.6 bits (180), Expect = 7e-13
Identities = 56/180 (31%), Positives = 93/180 (51%), Gaps = 3/180 (1%)
Frame = +1
Query: 238 EKYRPKRLDDLVSHDDIIKTINQFMKENQLPHL-LFYGPPGTGKTSTILACAKQMYTPQQ 414
++YRP +D+ + + + F+K ++ ++ L PGTGKT+ L ++
Sbjct: 28 QRYRPTTIDECILPAADKEIMRGFIKSGRIDNMTLVSDSPGTGKTTLALVLGAEV----- 82
Query: 415 FSSMVLELNASDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAM-TNDAQNALRRI 591
+ V+ +N SD G+ +R + FAS+ T K G K+I++DE D +AQ +R
Sbjct: 83 -DAEVMFVNGSDC-GVNFIRSDLDRFASSMTQKKGG-KIILIDEFDRPGMAEAQKHMRSF 139
Query: 592 IEKYTENVRFCIICNYLGKIIPALQSRCTRFRF-APLKQDQIVPRLQEIVTTEGVKMSEG 768
IE Y++NV + N + I PAL SRC +F +P K+++I Q I G+ EG
Sbjct: 140 IEAYSKNVTVIVSANNINGIHPALLSRCPPIKFGSPSKEERIDLMKQMIKRCFGILEIEG 199
>UniRef50_A2E9V5 Cluster: Differentiation specific element binding
protein, putative; n=1; Trichomonas vaginalis G3|Rep:
Differentiation specific element binding protein,
putative - Trichomonas vaginalis G3
Length = 694
Score = 76.6 bits (180), Expect = 7e-13
Identities = 63/199 (31%), Positives = 97/199 (48%), Gaps = 9/199 (4%)
Frame = +1
Query: 238 EKYRPKRLDDLVSHDDIIKTINQFM---KENQLPHLLFYGPPGTGKTSTILACAKQM--Y 402
EKYRP+ +DL+ + D+I+ I+ ++ + +L GPPG GKTST L AK +
Sbjct: 224 EKYRPQNRNDLIGNKDLIEKIDNWLITFSKQDKKAVLISGPPGIGKTSTALLLAKSRGYH 283
Query: 403 TPQQFSSMVLELNASDDRGIGIVRGQIL-SFASTRTIFKAGPKLIILDEADAM-TND--A 570
+ +S V A +D + G+ L SF T K II DE D M T D
Sbjct: 284 VVEYNASDVRNKAAIEDIAKTLFNGKTLYSFTQQNTNNKQ--HAIIFDEIDGMSTGDRGG 341
Query: 571 QNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEG 750
AL + IEK T + FCI + + + + +F+ + +++ R+ EI EG
Sbjct: 342 VQALAQFIEKSTFPI-FCICNDRQSEKLKPILKYVLDIQFSAPDKKEMIQRVFEISKQEG 400
Query: 751 VKMSEGGMKALLTWSGGDM 807
+K+ + A + SGGDM
Sbjct: 401 IKIDRKNLFAAIDKSGGDM 419
>UniRef50_Q8G6Y0 Cluster: DNA polymerase III subunit gamma/tau; n=5;
Bifidobacterium|Rep: DNA polymerase III subunit
gamma/tau - Bifidobacterium longum
Length = 970
Score = 76.2 bits (179), Expect = 9e-13
Identities = 64/212 (30%), Positives = 99/212 (46%), Gaps = 23/212 (10%)
Frame = +1
Query: 241 KYRPKRLDDLVSHDDIIKTINQFMKENQLPHL-LFYGPPGTGKTST--ILA----CAK-- 393
+YRP + ++ D + + + + E +L H LF GP G GKTS+ ILA CAK
Sbjct: 8 RYRPDTFEGVIGQDQVTVPLMRALDEGKLTHAYLFSGPRGCGKTSSARILARCVNCAKGP 67
Query: 394 ------------QMYTPQQFSSMVLELNASDDRGIGIVRG--QILSFASTRTIFKAGPKL 531
+ T S V+E++A+ G+ R + FA R +K +
Sbjct: 68 TSHPCGECESCKDLATGGPGSIDVVEIDAASHNGVDDARELRERAGFAPARDRYK----I 123
Query: 532 IILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQ 711
ILDEA +T NAL +I+E+ E+V F K+I ++SR + F + Q+
Sbjct: 124 FILDEAHMVTQQGFNALLKIVEEPPEHVMFIFATTEPDKVIGTIRSRTHHYPFRLVPQEV 183
Query: 712 IVPRLQEIVTTEGVKMSEGGMKALLTWSGGDM 807
+ P L+ I EG+K G +K + GG M
Sbjct: 184 MGPYLETICDKEGIKPEPGVLKLAMRAGGGSM 215
>UniRef50_Q601S8 Cluster: DNA polymerase III gamma-tau subunits;
n=5; Mycoplasma hyopneumoniae|Rep: DNA polymerase III
gamma-tau subunits - Mycoplasma hyopneumoniae (strain
232)
Length = 726
Score = 76.2 bits (179), Expect = 9e-13
Identities = 59/215 (27%), Positives = 107/215 (49%), Gaps = 16/215 (7%)
Frame = +1
Query: 211 IKTLFLRRVEKYRPKRLDDLVSHDDIIKTINQFMKENQLPH-LLFYGPPGTGKTST--IL 381
I+ ++ KYRPK+ D+V +++++ +K H LF GP GTGKT+ I
Sbjct: 8 IRKDYIAFYRKYRPKKFSDIVGQKFLLESLKNIIKSGNFFHAYLFSGPHGTGKTTVAKIF 67
Query: 382 ACA------KQMYTPQQ-----FSSM--VLELNASDDRGIGIVRGQILSFASTRTIFKAG 522
A A + P Q F++ ++E++A+ G+ +R I + + I +
Sbjct: 68 ANAINCTHKTDLIEPCQNCIKNFNNSLDIIEMDAASHNGVKEIREIIENSINFPQI--SP 125
Query: 523 PKLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLK 702
K+ ILDE ++ A NA + +E+ +++ F + + KI + SR R+ F LK
Sbjct: 126 YKIYILDEVHMLSTSAFNAFLKTLEEPPKHMIFILATTEVHKIPLTILSRVQRYNFLALK 185
Query: 703 QDQIVPRLQEIVTTEGVKMSEGGMKALLTWSGGDM 807
+D+I RL+ I+ E +K + +K++ S G +
Sbjct: 186 EDEICHRLEFILEKEKIKYEKNALKSVFLLSQGSL 220
>UniRef50_Q9SN33 Cluster: Putative uncharacterized protein F28A21.230;
n=2; Arabidopsis thaliana|Rep: Putative uncharacterized
protein F28A21.230 - Arabidopsis thaliana (Mouse-ear
cress)
Length = 1057
Score = 75.8 bits (178), Expect = 1e-12
Identities = 58/207 (28%), Positives = 107/207 (51%), Gaps = 17/207 (8%)
Frame = +1
Query: 238 EKYRPKRLDDLVSHDDIIKTINQFMKENQLPHL-LFYGPPGTGKTST--ILACAKQMYTP 408
EKY PK DL+ + +++ ++ + +L L +F+GP GTGKTS I A A ++
Sbjct: 435 EKYTPKTFRDLLGQNLVVQALSNAVARRKLGLLYVFHGPNGTGKTSCARIFARALNCHSM 494
Query: 409 QQ------FSSMVL-ELNAS-DDRGIGIVRG----QILSFASTRTIFKA-GPKLIILDEA 549
+Q SS V ++ S + R +G V +I+ + + P++ I D+
Sbjct: 495 EQPKPCGTCSSCVSHDMGKSWNIREVGPVGNYDFEKIMDLLDGNVMVSSQSPRVFIFDDC 554
Query: 550 DAMTNDAQNALRRIIEKYT-ENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRL 726
D +++D NAL +++++ +V F ++C+ L + + SRC +F F LK IV L
Sbjct: 555 DTLSSDCWNALSKVVDRAAPRHVVFILVCSSLDVLPHVIISRCQKFFFPKLKDADIVYSL 614
Query: 727 QEIVTTEGVKMSEGGMKALLTWSGGDM 807
Q I + E +++ + +K + + S G +
Sbjct: 615 QWIASKEEIEIDKDALKLIASRSDGSL 641
>UniRef50_Q4HGU7 Cluster: DNA polymerase III gamma and tau subunits;
n=3; Campylobacter|Rep: DNA polymerase III gamma and tau
subunits - Campylobacter coli RM2228
Length = 518
Score = 74.9 bits (176), Expect = 2e-12
Identities = 57/208 (27%), Positives = 99/208 (47%), Gaps = 19/208 (9%)
Frame = +1
Query: 241 KYRPKRLDDLVSHDDIIKTINQFMKENQLPHL-LFYGPPGTGKTSTI------LAC---- 387
KYRPK D+L+ + ++ + N+L H LF G G+GKTS+ L C
Sbjct: 8 KYRPKTFDELIGQKTVSTSLKYALNHNRLAHAYLFSGLRGSGKTSSARIFSRALVCDNGP 67
Query: 388 -------AKQMYTPQQFSSM-VLELNASDDRGIGIVRGQILSFASTRTIFKAGPKLIILD 543
KQ + + ++E++A+ +RG+ ++ I T ++ + K+ I+D
Sbjct: 68 SDTPCGTCKQCLAALEGKHIDIIEMDAASNRGLEDIQALIEQTKYTPSMARF--KIFIID 125
Query: 544 EADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPR 723
E +T A NAL + +E+ V+F + K+ + SR FRF + Q++I+
Sbjct: 126 EVHMLTPQAANALLKTLEEPPSYVKFILATTDPLKLPATVLSRTQHFRFKQIPQNEILNH 185
Query: 724 LQEIVTTEGVKMSEGGMKALLTWSGGDM 807
L+EI+ E VK E +K + G +
Sbjct: 186 LKEILNKENVKFEEEALKFVARSGNGSL 213
>UniRef50_Q18U88 Cluster: DNA polymerase III, subunits gamma and
tau; n=2; Desulfitobacterium hafniense|Rep: DNA
polymerase III, subunits gamma and tau -
Desulfitobacterium hafniense (strain DCB-2)
Length = 554
Score = 74.9 bits (176), Expect = 2e-12
Identities = 60/214 (28%), Positives = 102/214 (47%), Gaps = 19/214 (8%)
Frame = +1
Query: 223 FLRRVEKYRPKRLDDLVSHDDIIKTINQFMKENQLPHL-LFYGPPGTGKTSTILACAKQM 399
+L ++RPK D+V D + KT+ + ++++ H LF GP GTGKT+T AK +
Sbjct: 3 YLALYREWRPKNFKDMVGQDHVTKTLTNALMQSKVAHAYLFSGPRGTGKTTTAKVLAKAL 62
Query: 400 -----------------YTPQQFSSM-VLELNASDDRGIGIVRGQILSFASTRTIFKAGP 525
+ Q S+M V E++A+ +RGI +R L + ++
Sbjct: 63 NCEHREGVEPCNQCAFCLSIDQGSAMEVFEIDAASNRGIDEIRD--LRDKVRLSAGESKY 120
Query: 526 KLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQ 705
K+ I+DE +T +A NAL + +E+ E V F + + KI + SR RF F +
Sbjct: 121 KVYIIDEVHMLTTEAFNALLKTLEEPPERVVFILATTEVHKIPLTILSRVQRFEFHRIPL 180
Query: 706 DQIVPRLQEIVTTEGVKMSEGGMKALLTWSGGDM 807
+QI L ++ T G + ++ + S G +
Sbjct: 181 EQIHSHLDKVCQTIGRDVEPEALQIIAQKSEGGL 214
>UniRef50_A6DD60 Cluster: DNA polymerase III subunits gamma and tau;
n=1; Caminibacter mediatlanticus TB-2|Rep: DNA
polymerase III subunits gamma and tau - Caminibacter
mediatlanticus TB-2
Length = 487
Score = 74.9 bits (176), Expect = 2e-12
Identities = 57/206 (27%), Positives = 101/206 (49%), Gaps = 17/206 (8%)
Frame = +1
Query: 241 KYRPKRLDDLVSHDDIIKTINQFMKENQLPHL-LFYGPPGTGKTSTILACAKQMYTPQQF 417
KYRPK+ ++++ D II+T+ + N++ + LF G G+GKT+T +K + +
Sbjct: 6 KYRPKKFEEIIGQDAIIQTLINSLNSNRIANAYLFSGLRGSGKTTTARIFSKALQCEKGI 65
Query: 418 SSMVLE-----LNASDDRGIGIVRGQILSFASTRTI------FKAGP-----KLIILDEA 549
SS E A+++R I I+ S I K P K+ I+DE
Sbjct: 66 SSSPCEECESCKLANENRHIDIIEMDAASNRKIEDIRELIEHTKYKPSISRFKIFIIDEV 125
Query: 550 DAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQ 729
+TN+A NAL + +E+ E V+F + K+ + SR FRF + + +I LQ
Sbjct: 126 HMLTNEAFNALLKTLEEPPEYVKFIMATTDPLKLPATILSRVQHFRFNKIPEKEIESFLQ 185
Query: 730 EIVTTEGVKMSEGGMKALLTWSGGDM 807
+++ E VK + ++ ++ + G +
Sbjct: 186 KVLIKENVKFEDEALRLIVKSAKGSV 211
>UniRef50_A6CH16 Cluster: DNA polymerase III gamma and tau subunits;
n=1; Planctomyces maris DSM 8797|Rep: DNA polymerase III
gamma and tau subunits - Planctomyces maris DSM 8797
Length = 484
Score = 74.9 bits (176), Expect = 2e-12
Identities = 52/208 (25%), Positives = 102/208 (49%), Gaps = 19/208 (9%)
Frame = +1
Query: 241 KYRPKRLDDLVSHDDIIKTINQFMKENQLPHL-LFYGPPGTGKTSTILACAKQMYTPQQF 417
++RP+ ++V + + + ++ +++ H LF G G GKTS AK + P
Sbjct: 14 RFRPQNFSEVVGQGMVAQALQNAIRGDRVAHAYLFTGARGVGKTSMARILAKALNCPHTQ 73
Query: 418 SSM------------------VLELNASDDRGIGIVRGQILSFASTRTIFKAGPKLIILD 543
+ VLE++ + +RGI +R + + + R++ ++ K+ I+D
Sbjct: 74 DGIPCGECEVCQNIAVGSDVDVLEIDGASNRGIDDIRS-LRANVNVRSM-RSKYKIYIID 131
Query: 544 EADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPR 723
E +T +A NAL + +E+ NV+F K+ + SRC RF F ++++ I R
Sbjct: 132 EVHMLTKEAFNALLKTLEEPPPNVKFIFCTTEPNKLPDTILSRCQRFDFGYIEENSICDR 191
Query: 724 LQEIVTTEGVKMSEGGMKALLTWSGGDM 807
L++I E V +++ ++ + +GG M
Sbjct: 192 LKQIAEAEQVSVADDAIQLVARRAGGSM 219
>UniRef50_Q9FK71 Cluster: Similarity to DNA polymerase III; n=3;
Arabidopsis thaliana|Rep: Similarity to DNA polymerase
III - Arabidopsis thaliana (Mouse-ear cress)
Length = 900
Score = 74.9 bits (176), Expect = 2e-12
Identities = 52/204 (25%), Positives = 100/204 (49%), Gaps = 14/204 (6%)
Frame = +1
Query: 238 EKYRPKRLDDLVSHDDIIKTINQFMKENQLPHL-LFYGPPGTGKTST--ILACAKQMYTP 408
+KY P+ DL+ + +++ ++ + + ++ L +F+GP GTGKTS + A A ++
Sbjct: 347 QKYAPRTFRDLLGQNLVVQALSNAIAKRRVGLLYVFHGPNGTGKTSCARVFARALNCHST 406
Query: 409 QQFS--SMVLELNASDDRGIGIVR--GQILSFASTRTIFKAGPK-------LIILDEADA 555
+Q + + DD +R G + SF + K + ++I D+ D
Sbjct: 407 EQSKPCGVCSSCVSYDDGKNRYIREMGPVKSFDFENLLDKTNIRQQQKQQLVLIFDDCDT 466
Query: 556 MTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEI 735
M+ D N L +I+++ V F ++C+ L + + SRC +F F LK I+ LQ I
Sbjct: 467 MSTDCWNTLSKIVDRAPRRVVFVLVCSSLDVLPHIIVSRCQKFFFPKLKDVDIIDSLQLI 526
Query: 736 VTTEGVKMSEGGMKALLTWSGGDM 807
+ E + + + +K + + S G +
Sbjct: 527 ASKEEIDIDKDALKLVASRSDGSL 550
>UniRef50_P09122 Cluster: DNA polymerase III subunit gamma/tau;
n=16; Bacillaceae|Rep: DNA polymerase III subunit
gamma/tau - Bacillus subtilis
Length = 563
Score = 74.9 bits (176), Expect = 2e-12
Identities = 59/209 (28%), Positives = 101/209 (48%), Gaps = 21/209 (10%)
Frame = +1
Query: 244 YRPKRLDDLVSHDDIIKTINQFMKENQLPHL-LFYGPPGTGKTSTILACAKQM---YTPQ 411
+RP+R +D+V + I KT+ + + + H LF GP GTGKTS AK + + P
Sbjct: 10 FRPQRFEDVVGQEHITKTLQNALLQKKFSHAYLFSGPRGTGKTSAAKIFAKAVNCEHAPV 69
Query: 412 QFS---------------SMVLELNASDDRGIGIVRG--QILSFASTRTIFKAGPKLIIL 540
S V+E++A+ + G+ +R + FA + +K + I+
Sbjct: 70 DEPCNECAACKGITNGSISDVIEIDAASNNGVDEIRDIRDKVKFAPSAVTYK----VYII 125
Query: 541 DEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVP 720
DE ++ A NAL + +E+ E+ F + KI + SRC RF F + IV
Sbjct: 126 DEVHMLSIGAFNALLKTLEEPPEHCIFILATTEPHKIPLTIISRCQRFDFKRITSQAIVG 185
Query: 721 RLQEIVTTEGVKMSEGGMKALLTWSGGDM 807
R+ +IV E +++ EG ++ + + + G M
Sbjct: 186 RMNKIVDAEQLQVEEGSLEIIASAAHGGM 214
>UniRef50_Q7V9L4 Cluster: DNA polymerase III gamma/tau subunit; n=4;
Prochlorococcus marinus|Rep: DNA polymerase III
gamma/tau subunit - Prochlorococcus marinus
Length = 559
Score = 74.5 bits (175), Expect = 3e-12
Identities = 53/211 (25%), Positives = 99/211 (46%), Gaps = 21/211 (9%)
Frame = +1
Query: 238 EKYRPKRLDDLVSHDDIIKTINQFMKENQL-PHLLFYGPPGTGKTSTILACAKQMYTPQQ 414
+KYRPKR DDLV D I+ T+ Q + N++ P LF GP GTGKTS+ A+ + Q
Sbjct: 10 QKYRPKRFDDLVGQDSIVATLKQALISNRIAPAYLFCGPRGTGKTSSARILARSLNCQQS 69
Query: 415 FSSM--------------------VLELNASDDRGIGIVRGQILSFASTRTIFKAGPKLI 534
++E++A+ + G+ +R +++ + + +A K+
Sbjct: 70 EKPTIAPCCQCNLCKEIGKGTALDIIEIDAASNTGVDNIR-ELIERSQFAPV-QARWKVY 127
Query: 535 ILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQI 714
++DE ++ A NAL + +E+ F + +++ + SRC RF F + +
Sbjct: 128 VIDECHMLSTAAFNALLKTLEEPPSQTVFVLATTDPQRLLQTILSRCQRFDFRRIPITSL 187
Query: 715 VPRLQEIVTTEGVKMSEGGMKALLTWSGGDM 807
L I + E +++ + + + S G +
Sbjct: 188 TSHLTTIASKEKIEIDQESINLIAQRSEGGL 218
>UniRef50_A6FVT5 Cluster: Replication factor C small subunit; n=1;
Roseobacter sp. AzwK-3b|Rep: Replication factor C small
subunit - Roseobacter sp. AzwK-3b
Length = 234
Score = 74.5 bits (175), Expect = 3e-12
Identities = 54/200 (27%), Positives = 94/200 (47%), Gaps = 10/200 (5%)
Frame = +1
Query: 238 EKYRPKRLDDLVSHDDIIK-TINQFMKENQLPHLLFYGPPGTGKTSTILACAKQMYTPQQ 414
+KY P + +L+ D I + T ++ L+ +GPPGT KT+T ++ Y
Sbjct: 5 KKYEPLTVAELIFADPIAQATCQRYAAGKAYKPLMLWGPPGTAKTTTARVIIRERYRAAG 64
Query: 415 FSSMVLELNASDDRGIGIVRGQILSFASTRTIFKAGPK--LIILDEADAMTNDAQNALRR 588
+ + E N ++ + +I + +S + + + K +I+++E D M D Q R
Sbjct: 65 HTGAIEEFNGAE-----LTAKEIANLSSIQMLQRLTGKVPIILINEFDEMDRDTQAKFRA 119
Query: 589 IIEKYTENVRFCIICN-------YLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTE 747
+EK+ + + + N KI+PALQSR R AP +PR Q I+ E
Sbjct: 120 WMEKH-KGIELVVTTNEQPGVQGVKQKIMPALQSRFERVELAPPSLQDCLPRAQAIMQQE 178
Query: 748 GVKMSEGGMKALLTWSGGDM 807
G +S ++ LL+ GD+
Sbjct: 179 GFAVSTHALQMLLSTFNGDI 198
>UniRef50_Q8SR43 Cluster: DNA REPLICATION FACTOR C 38kDa SUBUNIT;
n=1; Encephalitozoon cuniculi|Rep: DNA REPLICATION
FACTOR C 38kDa SUBUNIT - Encephalitozoon cuniculi
Length = 354
Score = 74.5 bits (175), Expect = 3e-12
Identities = 56/223 (25%), Positives = 104/223 (46%), Gaps = 30/223 (13%)
Frame = +1
Query: 235 VEKYRPKRLDDLVSHDDIIKTINQFMKENQLPHLLFYGPPGTGK---------------- 366
+EKYRP+ D+++ ++ + + E +PH++ +G G GK
Sbjct: 4 IEKYRPRSFDEMIGREEASGLLKSYTLET-IPHMIVHGRSGHGKKTVLLCLVNHLYGSIP 62
Query: 367 -----TSTILACAKQMYTPQQFSSMVLELNAS----DDRGI--GIVR--GQILSFASTRT 507
T+ +L+ AK++ S +E++ S DR + I++ GQ S
Sbjct: 63 EMKIRTTEVLSGAKKIEVSYMESDEYVEISPSRYGYHDRAVIQSIIKEMGQTKPILSMLA 122
Query: 508 IFKAGP-KLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRF 684
+ P KL+++ A+ +T +AQ ALRR IE Y+ +R ++CN L ++I ++SRC
Sbjct: 123 RSRRAPIKLVVITSAEELTLEAQAALRRTIEVYSGVLRVVLVCNELSRLIEPIRSRCFFL 182
Query: 685 RFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKALLTWSGGDMXK 813
R + + + I+ E + + + + SGGDM +
Sbjct: 183 RIPGFSDEDVTSNMCRILEKENYTVPKETLVEICRESGGDMRR 225
>UniRef50_Q9RRS5 Cluster: DNA polymerase III, tau/gamma subunit;
n=3; Deinococcus|Rep: DNA polymerase III, tau/gamma
subunit - Deinococcus radiodurans
Length = 615
Score = 74.1 bits (174), Expect = 4e-12
Identities = 58/208 (27%), Positives = 97/208 (46%), Gaps = 18/208 (8%)
Frame = +1
Query: 238 EKYRPKRLDDLVSHDDIIKTINQFMKENQLPHL-LFYGPPGTGKTST--ILACAKQMYTP 408
++ RP R +D+V + + + +++ ++ H LF GP G GKT+T ++A P
Sbjct: 6 QRARPIRWEDVVGQEHVKDVLRTALEQGRIGHAYLFSGPRGVGKTTTARLIAMTANCTGP 65
Query: 409 Q-----QFSSM----------VLELNASDDRGIGIVRGQILSFASTRTIFKAGPKLIILD 543
+ S V+E++A+ + + VR L + G K+ ILD
Sbjct: 66 APKPCGECESCLAVRAGSHPDVMEIDAASNNSVDDVRD--LREKVGLAAMRGGKKIYILD 123
Query: 544 EADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPR 723
EA M+ A NAL + +E+ E+V F + KIIP + SRC +RF L ++I +
Sbjct: 124 EAHMMSRAAFNALLKTLEEPPEHVIFILATTEPEKIIPTILSRCQHYRFRRLTSEEIAGK 183
Query: 724 LQEIVTTEGVKMSEGGMKALLTWSGGDM 807
L +VT EG + + + G M
Sbjct: 184 LAGLVTLEGASADPDALNLIGRLADGAM 211
>UniRef50_Q5L3X6 Cluster: DNA-directed DNA polymerase III gamma and
tau subunits; n=2; Geobacillus|Rep: DNA-directed DNA
polymerase III gamma and tau subunits - Geobacillus
kaustophilus
Length = 559
Score = 74.1 bits (174), Expect = 4e-12
Identities = 58/209 (27%), Positives = 102/209 (48%), Gaps = 21/209 (10%)
Frame = +1
Query: 244 YRPKRLDDLVSHDDIIKTINQFMKENQLPHL-LFYGPPGTGKTSTILACAKQMYTPQQFS 420
+RP+R D+V + + KT+ + ++++ H LF GP GTGKTS AK + Q +
Sbjct: 10 FRPQRFADMVGQEHVTKTLQSALLQHKISHAYLFSGPRGTGKTSAAKIFAKAVNCEQAPA 69
Query: 421 SM------------------VLELNASDDRGIGIVRG--QILSFASTRTIFKAGPKLIIL 540
+ VLE++A+ + + +R + + FA T +K + I+
Sbjct: 70 AEPCNECPACLGITNGTVPDVLEIDAASNNRVDEIRDIREKVKFAPTSARYK----VYII 125
Query: 541 DEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVP 720
DE ++ A NAL + +E+ ++V F + KI + SRC RF F + IV
Sbjct: 126 DEVHMLSIGAFNALLKTLEEPPKHVIFILATTEPHKIPTTIISRCQRFDFRRIPLPAIVS 185
Query: 721 RLQEIVTTEGVKMSEGGMKALLTWSGGDM 807
RL+ + + +GV+ S+ + A+ + G M
Sbjct: 186 RLKYVASAQGVEASDEALSAIARAADGGM 214
>UniRef50_Q2LYB8 Cluster: DNA polymerase III subunit gamma/tau; n=1;
Syntrophus aciditrophicus SB|Rep: DNA polymerase III
subunit gamma/tau - Syntrophus aciditrophicus (strain
SB)
Length = 588
Score = 74.1 bits (174), Expect = 4e-12
Identities = 58/216 (26%), Positives = 101/216 (46%), Gaps = 21/216 (9%)
Frame = +1
Query: 223 FLRRVEKYRPKRLDDLVSHDDIIKTINQFMKENQLPH-LLFYGPPGTGKTSTILACAKQM 399
+L K+RP+ +D+V +++T+ +++ ++ H LF GP G GKTS AK +
Sbjct: 3 YLVLARKWRPQVFEDVVGQQHVVQTLKNAIRQERIAHAFLFSGPRGVGKTSIARILAKAI 62
Query: 400 Y-------TP-----------QQFSSMVLELNASDDRGIGIVRG--QILSFASTRTIFKA 519
TP + S V E++ + +RGI +R + + F +K
Sbjct: 63 NCEQGPAGTPCNVCTNCREITEGISMDVREIDGASNRGIDEIRELRERIRFLPVSCRYK- 121
Query: 520 GPKLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPL 699
+ I+DE +T +A NAL + +E+ +V F K+ + SRC F F L
Sbjct: 122 ---VYIIDEVHMLTREAFNALLKTLEEPPPHVVFIFATTETHKVPATILSRCQCFEFRRL 178
Query: 700 KQDQIVPRLQEIVTTEGVKMSEGGMKALLTWSGGDM 807
QI +L++I TE +++S+ G+ + G M
Sbjct: 179 SLRQIAEQLRKIAETEKIRISDAGLAWIAEAGDGSM 214
>UniRef50_A6QBX8 Cluster: DNA polymerase III, gamma/tau subunits;
n=1; Sulfurovum sp. NBC37-1|Rep: DNA polymerase III,
gamma/tau subunits - Sulfurovum sp. (strain NBC37-1)
Length = 666
Score = 74.1 bits (174), Expect = 4e-12
Identities = 55/213 (25%), Positives = 100/213 (46%), Gaps = 19/213 (8%)
Frame = +1
Query: 226 LRRVEKYRPKRLDDLVSHDDIIKTINQFMKENQLPHL-LFYGPPGTGKTSTILACAKQMY 402
L KYRP DDL+ D + +T++ + N+L H LF G G+GKTST AK +
Sbjct: 3 LALARKYRPATFDDLIGQDSVSQTLSLALDGNRLSHAYLFSGLRGSGKTSTARIFAKALL 62
Query: 403 TPQQFSSM------------------VLELNASDDRGIGIVRGQILSFASTRTIFKAGPK 528
Q +S ++E++A+ +RGI ++ ++ + A K
Sbjct: 63 CEQGTTSHPCGTCTHCVMAAENRHMDIIEMDAASNRGIDDIK-DLIEHTKYKPS-SARYK 120
Query: 529 LIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQD 708
+ I+DE +T A NAL + +E+ + V+F + K+ + SR FRF + Q+
Sbjct: 121 IFIIDEVHMLTTQAFNALLKTLEEPPDFVKFILATTDPLKLPATILSRTQHFRFKKIPQN 180
Query: 709 QIVPRLQEIVTTEGVKMSEGGMKALLTWSGGDM 807
++ L+ I+ E ++ + ++ + G +
Sbjct: 181 LVLSHLEHIMNLEKIEYEKEALEIIARSGAGSL 213
>UniRef50_A4RWV3 Cluster: Predicted protein; n=8; Viridiplantae|Rep:
Predicted protein - Ostreococcus lucimarinus CCE9901
Length = 355
Score = 55.6 bits (128), Expect(2) = 5e-12
Identities = 38/132 (28%), Positives = 67/132 (50%), Gaps = 5/132 (3%)
Frame = +1
Query: 433 ELNASD--DRGIGIVRGQILSFASTRTIFKAGP---KLIILDEADAMTNDAQNALRRIIE 597
E+N SD + +V+ I A +R I G K+++L E D ++ +AQ LRR +E
Sbjct: 97 EMNPSDCGSKDRYVVQEVIKEMARSRPIDSDGCEGFKVLVLTEVDRLSREAQYGLRRTME 156
Query: 598 KYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMK 777
KY+ + R +I +++ ALQSRC R + ++I L ++ E +++
Sbjct: 157 KYSASCRLFLIAERPSRVMDALQSRCLPVRVPGPRVEEIENLLHDVAKKEKLELPPELAT 216
Query: 778 ALLTWSGGDMXK 813
+ T SG +M +
Sbjct: 217 RVATASGRNMRR 228
Score = 38.3 bits (85), Expect(2) = 5e-12
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +1
Query: 235 VEKYRPKRLDDLVSHDDI-IKTINQFMKENQLPHLLFYGPPGTGKTSTILACAKQMYTP 408
V+K+RP L + + + K + + PHL FYGP G GK + L ++++ P
Sbjct: 4 VDKHRPHALGECDAINTAQAKHLKLLIANGDCPHLFFYGPSGAGKKTLALGVLREIFGP 62
>UniRef50_Q82X62 Cluster: DnaX; DNA polymerase III (Subunits tau and
gamma) protein; n=3; Betaproteobacteria|Rep: DnaX; DNA
polymerase III (Subunits tau and gamma) protein -
Nitrosomonas europaea
Length = 525
Score = 73.7 bits (173), Expect = 5e-12
Identities = 58/208 (27%), Positives = 101/208 (48%), Gaps = 19/208 (9%)
Frame = +1
Query: 241 KYRPKRLDDLVSHDDIIKTINQFMKENQLPHL-LFYGPPGTGKTST--ILA--------- 384
K+RPK +LV + +++ + M++N+L H LF G G GKT+ ILA
Sbjct: 10 KWRPKDFSELVGQEHVVRALINSMEQNRLHHAYLFTGTRGVGKTTVARILAKALNCEQGV 69
Query: 385 -------CAKQMYTPQQFSSMVLELNASDDRGIGIVRGQILSFASTRTIFKAGPKLIILD 543
CA M Q ++EL+A+ + + +R ++L A + A K+ ++D
Sbjct: 70 TAAPCGKCAACMAIDQGNFIDLIELDAASNTQVDAMR-ELLDNAQYAPV-AARYKVYLID 127
Query: 544 EADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPR 723
E ++ A NA+ + +E+ E+V+F + KI + SRC +F + IV R
Sbjct: 128 EVHMLSRSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQIPPSLIVER 187
Query: 724 LQEIVTTEGVKMSEGGMKALLTWSGGDM 807
L EI++ EG+ G++ L + G +
Sbjct: 188 LTEILSMEGIPADAAGLRLLAQAAKGSL 215
>UniRef50_Q7NK69 Cluster: DNA polymerase III gamma and tau subunits;
n=1; Gloeobacter violaceus|Rep: DNA polymerase III gamma
and tau subunits - Gloeobacter violaceus
Length = 632
Score = 73.7 bits (173), Expect = 5e-12
Identities = 56/208 (26%), Positives = 103/208 (49%), Gaps = 19/208 (9%)
Frame = +1
Query: 241 KYRPKRLDDLVSHDDIIKTINQFMKENQLPHL-LFYGPPGTGKTSTILACAKQMY----- 402
KYRP+R D+V I+ T+ +K ++ H LF G GTGKT+T AK +
Sbjct: 9 KYRPQRFGDVVGQGPIVTTLTNALKAGRIAHAYLFTGSRGTGKTTTARLIAKALNCIHGP 68
Query: 403 TP------QQFSSM-------VLELNASDDRGIGIVRGQILSFASTRTIFKAGPKLIILD 543
TP +Q ++ V+E++A+ + G+ +R +++ A + ++ K+ ILD
Sbjct: 69 TPDPCGRCEQCLAIATGSALDVIEIDAASNTGVDNIR-ELIERAQFAPV-QSRQKVYILD 126
Query: 544 EADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPR 723
E +++ A N L + +E+ +V F + K++P + SRC RF F + +V
Sbjct: 127 EVHMLSSAAFNCLLKTLEEPPAHVTFVLATTDPQKVLPTVISRCQRFDFRRIPLTDMVKH 186
Query: 724 LQEIVTTEGVKMSEGGMKALLTWSGGDM 807
L+EI E + + ++ + + G +
Sbjct: 187 LEEIAWKEDIDIEHEAVELVAQIAQGGL 214
>UniRef50_P75177 Cluster: DNA polymerase III subunit gamma/tau; n=1;
Mycoplasma pneumoniae|Rep: DNA polymerase III subunit
gamma/tau - Mycoplasma pneumoniae
Length = 681
Score = 73.7 bits (173), Expect = 5e-12
Identities = 61/208 (29%), Positives = 92/208 (44%), Gaps = 18/208 (8%)
Frame = +1
Query: 238 EKYRPKRLDDLVSHDDIIKTINQFMKENQLPH-LLFYGPPGTGKTSTILACAK------- 393
+KYRP + D V D I + I + ++QLPH +F G GTGKT+ AK
Sbjct: 7 QKYRPTKFSDTVGQDSIKRIIVNAITQDQLPHGYIFAGERGTGKTTFAKIIAKAINCLNW 66
Query: 394 ------QMYTPQQFSSM----VLELNASDDRGIGIVRGQILSFASTRTIFKAGPKLIILD 543
Q Q +S V E++A+ GI +R L+ FK K+ ILD
Sbjct: 67 NGDVCNQCEACQAINSNSAIDVFEIDAASKNGINDIRE--LAENVFNLPFKFKKKVYILD 124
Query: 544 EADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPR 723
EA +T + + L + +E+ + V F KI + SRC F F + D I R
Sbjct: 125 EAHMLTPQSWSGLLKTLEEAPDYVLFIFATTEFNKIPITILSRCQSFFFKQITNDLIQQR 184
Query: 724 LQEIVTTEGVKMSEGGMKALLTWSGGDM 807
L E+ E +K++ + L + G +
Sbjct: 185 LAEVAAKESIKITTDALVKLADLAQGSL 212
>UniRef50_Q6F0D9 Cluster: DNA polymerase III gamma and tau subunits;
n=1; Mesoplasma florum|Rep: DNA polymerase III gamma and
tau subunits - Mesoplasma florum (Acholeplasma florum)
Length = 631
Score = 73.3 bits (172), Expect = 7e-12
Identities = 56/208 (26%), Positives = 97/208 (46%), Gaps = 19/208 (9%)
Frame = +1
Query: 241 KYRPKRLDDLVSHDDIIKTINQFMKENQLPH-LLFYGPPGTGKTST--ILA--------- 384
KYRP D+ H ++++ + +K N++ H LF G GTGKTS ILA
Sbjct: 10 KYRPSNFGDIAGHQNVVEILKNELKNNKISHSFLFAGQRGTGKTSIARILAKSVNCLNIK 69
Query: 385 -------CAKQMYTPQQFSSMVLELNASDDRGIGIVRGQILSFASTRTIFKAGPKLIILD 543
C + + +Q + ++E++A+ + G+ +R + S I K K+ I+D
Sbjct: 70 DGLACEVCESCIASNEQRNPDIIEMDAASNNGVDEIREIKNNINSLPFIGKY--KIYIID 127
Query: 544 EADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPR 723
E +T A NAL + +E+ + F + KI + SRC F F + + ++ R
Sbjct: 128 EVHMLTKAAFNALLKTLEEPPVHAIFILATTEYAKIPATILSRCQIFNFKKIDRISLMNR 187
Query: 724 LQEIVTTEGVKMSEGGMKALLTWSGGDM 807
L I EG K+ + ++ + S G +
Sbjct: 188 LSFICENEGYKIDKAVLEEIAIISEGSL 215
>UniRef50_A4CK17 Cluster: DNA polymerase III subunit gamma/tau; n=3;
Flavobacteriales|Rep: DNA polymerase III subunit
gamma/tau - Robiginitalea biformata HTCC2501
Length = 631
Score = 73.3 bits (172), Expect = 7e-12
Identities = 52/202 (25%), Positives = 92/202 (45%), Gaps = 7/202 (3%)
Frame = +1
Query: 223 FLRRVEKYRPKRLDDLVSHDDIIKTINQFMKENQLPH-LLFYGPPGTGKTSTILACAKQM 399
F+ KYRP++ +D+V I +T+ ++ + L LLF GP G GKT+ AK++
Sbjct: 15 FIVSARKYRPQQFEDVVGQQAITRTLLNAIENDHLAQALLFCGPRGVGKTTCARILAKKI 74
Query: 400 YTP------QQFSSMVLELNASDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMT 561
+ F+ + EL+A+ + + +R I + K K+ I+DE ++
Sbjct: 75 NEDGNQRDGEDFAFNIFELDAASNNSVDDIRNLIDQVRIPPQVGKY--KVYIIDEVHMLS 132
Query: 562 NDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVT 741
A NA + +E+ + F + KIIP + SRC F F + L+ I
Sbjct: 133 QAAFNAFLKTLEEPPRHAIFILATTEKHKIIPTILSRCQIFDFRRITVGDAASYLKYIAE 192
Query: 742 TEGVKMSEGGMKALLTWSGGDM 807
+G++ E + + + G M
Sbjct: 193 QQGIEADEEALHMIAQKADGAM 214
>UniRef50_Q9YBS5 Cluster: Replication factor C large subunit; n=1;
Aeropyrum pernix|Rep: Replication factor C large subunit
- Aeropyrum pernix
Length = 479
Score = 73.3 bits (172), Expect = 7e-12
Identities = 65/201 (32%), Positives = 96/201 (47%), Gaps = 10/201 (4%)
Frame = +1
Query: 235 VEKYRPKRLDDLVSHDDIIKTINQFMK---ENQLPH---LLFYGPPGTGKTSTILACAKQ 396
V KYRPKR++D+V+ D K + + K E + P L YGPPG GKTS + A A
Sbjct: 13 VIKYRPKRVEDVVNQDQAKKILVPWFKAWLEGRKPDKRAALLYGPPGVGKTSLVEAIA-- 70
Query: 397 MYTPQQFSSMVLELNASDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMT--NDA 570
+F+ ++ELNASD R + + + + R++FK G +I+LDE D + DA
Sbjct: 71 ----SEFNLEMIELNASDYRRRSDIERIVGAASRKRSMFKRG-VVILLDEVDGINPREDA 125
Query: 571 Q--NALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTT 744
AL +I K TEN + + L+ F PL IV LQ I
Sbjct: 126 GGIEALLSVI-KTTENPIVMTANDPWKDFLRPLREVSLMVEFRPLTLTHIVAVLQRICEA 184
Query: 745 EGVKMSEGGMKALLTWSGGDM 807
E ++ ++ + S GD+
Sbjct: 185 ERIECEREALRYIAERSEGDL 205
>UniRef50_Q8DJU0 Cluster: DNA polymerase III gamma and tau subunits;
n=4; Cyanobacteria|Rep: DNA polymerase III gamma and tau
subunits - Synechococcus elongatus (Thermosynechococcus
elongatus)
Length = 603
Score = 72.9 bits (171), Expect = 9e-12
Identities = 59/210 (28%), Positives = 96/210 (45%), Gaps = 21/210 (10%)
Frame = +1
Query: 241 KYRPKRLDDLVSHDDIIKTINQ-FMKENQLPHLLFYGPPGTGKTSTILACAKQMY----- 402
KYRP+R DLV I T+ Q +KE P LF GP GTGKTS+ AK +
Sbjct: 9 KYRPQRFSDLVGQGAIATTLTQALLKERIAPAYLFCGPRGTGKTSSARILAKSLNCLRSS 68
Query: 403 --TPQQ-------------FSSMVLELNASDDRGIGIVRGQILSFASTRTIFKAGPKLII 537
TP S V+E++A+ G+ +R +++ A + + K+ +
Sbjct: 69 KPTPDPCGQCEVCRQVANGTSLDVIEIDAASHTGVDNIR-ELIEKAQFAPV-QCRYKVYV 126
Query: 538 LDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIV 717
+DE ++ A NAL + +E+ V F + +++P + SRC RF F + ++V
Sbjct: 127 IDECHMLSVSAFNALLKTLEEPPPQVVFILATTDPQRVLPTIISRCQRFDFRRIPLGEMV 186
Query: 718 PRLQEIVTTEGVKMSEGGMKALLTWSGGDM 807
LQ I E + + + + S G +
Sbjct: 187 AHLQNIADKEQIDIEPEALTLVAQLSQGGL 216
>UniRef50_Q6KIL7 Cluster: DNA polymerase III subunit gamma and tau;
n=1; Mycoplasma mobile|Rep: DNA polymerase III subunit
gamma and tau - Mycoplasma mobile
Length = 720
Score = 72.9 bits (171), Expect = 9e-12
Identities = 55/205 (26%), Positives = 98/205 (47%), Gaps = 16/205 (7%)
Frame = +1
Query: 241 KYRPKRLDDLVSHDDIIKTINQFMKENQLPHL-LFYGPPGTGKTST--ILACAKQMYTPQ 411
KYRPK D++ D I+ T+ + ++L H LF GP GTGKTS I A A
Sbjct: 9 KYRPKNFDEIKGQDHIVTTLKNILNFDKLSHAYLFSGPRGTGKTSVAKIFAAALNCEHEI 68
Query: 412 QFSSM-------------VLELNASDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEAD 552
Q + ++E++A+ + G+ +R + + +K K+ I+DEA
Sbjct: 69 QKEKICNLCVENLDNNLDIIEIDAASNNGVDEIRELREKVKYSPSQYKY--KVYIIDEAH 126
Query: 553 AMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQE 732
+T A NAL + +E+ ++ F + KI + SR RF F + + +LQE
Sbjct: 127 MLTKSAFNALLKTLEEPPKHAIFILATTDPQKIPLTVISRVQRFNFKRITLPILEKQLQE 186
Query: 733 IVTTEGVKMSEGGMKALLTWSGGDM 807
++T E +++++ + + + G +
Sbjct: 187 VLTKENIRINKNALTLIAKMAEGGL 211
>UniRef50_Q3A8S0 Cluster: Putative DNA polymerase III, gamma/tau
subunits; n=1; Carboxydothermus hydrogenoformans
Z-2901|Rep: Putative DNA polymerase III, gamma/tau
subunits - Carboxydothermus hydrogenoformans (strain
Z-2901 / DSM 6008)
Length = 511
Score = 72.9 bits (171), Expect = 9e-12
Identities = 61/215 (28%), Positives = 96/215 (44%), Gaps = 19/215 (8%)
Frame = +1
Query: 220 LFLRRVEKYRPKRLDDLVSHDDIIKTINQFMKENQLPHL-LFYGPPGTGKTST--ILACA 390
++L K+RPK ++V + I+K + + Q+ H LF GP GTGKT+T +LA A
Sbjct: 1 MYLALYRKWRPKTFSEIVGQETIVKILKNAVATMQVAHAYLFSGPRGTGKTTTAKVLAKA 60
Query: 391 KQMYTP----------------QQFSSMVLELNASDDRGIGIVRGQILSFASTRTIFKAG 522
P Q V E++A+ +RGI +R S K
Sbjct: 61 VNCEHPVEGEPCNQCPSCIGINNQSLLNVFEIDAASNRGIDEIRELRESIKLVPAQGKY- 119
Query: 523 PKLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLK 702
K+ I+DE +TN+A NAL + +E+ E+V F + K+ + SRC RF F +
Sbjct: 120 -KVYIIDEVHMLTNEAFNALLKTLEEPPEHVIFILATTEFNKVPVTIVSRCQRFDFKRIS 178
Query: 703 QDQIVPRLQEIVTTEGVKMSEGGMKALLTWSGGDM 807
I L+ I E ++ + + S G +
Sbjct: 179 TKTIWEHLKNIAEKEKLQYEAEALHLIAEASEGGL 213
>UniRef50_Q8EUW0 Cluster: DNA polymerase III gamma-tau subunits;
n=1; Mycoplasma penetrans|Rep: DNA polymerase III
gamma-tau subunits - Mycoplasma penetrans
Length = 804
Score = 72.5 bits (170), Expect = 1e-11
Identities = 55/208 (26%), Positives = 93/208 (44%), Gaps = 19/208 (9%)
Frame = +1
Query: 241 KYRPKRLDDLVSHDDIIKTI-NQFMKENQLPHLLFYGPPGTGKT------STILACAKQM 399
KYRP ++++ IIKT+ N +K Q +F GP G GKT S +L C
Sbjct: 10 KYRPNSFNEIIGQKFIIKTLSNSIIKNKQSHAYIFSGPKGVGKTSIAKIFSKVLNCLNLK 69
Query: 400 ------------YTPQQFSSMVLELNASDDRGIGIVRGQILSFASTRTIFKAGPKLIILD 543
Q + ++EL+A+ + G+G VR I + ++ K K+ I+D
Sbjct: 70 DGDCCNNCNNCNLINQNQAVDIVELDAASNNGVGEVRNIIDTINYLPSVLKY--KVYIID 127
Query: 544 EADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPR 723
EA ++N A N ++IE + + F K P + SRC R+ F L ++
Sbjct: 128 EAHMLSNAAWNTFLKLIEDPPKYLVFIFATTESYKFPPTIISRCQRYNFLKLNNSELKEC 187
Query: 724 LQEIVTTEGVKMSEGGMKALLTWSGGDM 807
L+ I E +K+ + + + + G +
Sbjct: 188 LKSIAKKEKIKVEDNALNKIAELADGSL 215
>UniRef50_A5KSU9 Cluster: DNA polymerase III, subunits gamma and
tau; n=1; candidate division TM7 genomosp. GTL1|Rep: DNA
polymerase III, subunits gamma and tau - candidate
division TM7 genomosp. GTL1
Length = 454
Score = 72.5 bits (170), Expect = 1e-11
Identities = 51/188 (27%), Positives = 93/188 (49%), Gaps = 7/188 (3%)
Frame = +1
Query: 241 KYRPKRLDDLVSHDDIIKTINQFMKENQLPH-LLFYGPPGTGKTSTILACAKQMYT-PQQ 414
KYR + LD++V I + + ++ ++ H LF GP GTGKTS A + P +
Sbjct: 8 KYRSRTLDEVVGQKHITDVLLKALQHKRIGHAFLFTGPRGTGKTSIARILAHAINDLPYE 67
Query: 415 FSSM---VLELNASDDRGIGIVRG--QILSFASTRTIFKAGPKLIILDEADAMTNDAQNA 579
S+ ++E++A+ +R I +R + + A T FK + I+DE +T ++ NA
Sbjct: 68 NDSLHLDIVEIDAASNRRIDDIRDLREKVHIAPTSAPFK----VYIIDEVHMLTGESFNA 123
Query: 580 LRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKM 759
L + +E+ +V F + K+ + SR RF F + + ++ L I E +K+
Sbjct: 124 LLKTLEEPPAHVVFILATTEAHKLPATIVSRTQRFHFRLIPEAEVAKHLSHIAEQENIKI 183
Query: 760 SEGGMKAL 783
E ++ +
Sbjct: 184 DEDALELI 191
>UniRef50_A3FQ95 Cluster: Replication factor C subunit 5, putative;
n=3; Cryptosporidium|Rep: Replication factor C subunit
5, putative - Cryptosporidium parvum Iowa II
Length = 345
Score = 72.5 bits (170), Expect = 1e-11
Identities = 58/216 (26%), Positives = 105/216 (48%), Gaps = 29/216 (13%)
Frame = +1
Query: 235 VEKYRPKRLDDLVSHDDIIKTINQFMKENQ--LPHLLFYGPPGTGKTSTILACAKQMY-- 402
++KY+P+ L DL + ++ + + + +PHLLFYGP G GK I + +++
Sbjct: 4 IDKYQPRYLRDLKCNKELNSLLEKITSNSNGNIPHLLFYGPSGGGKKVRISSVLHEIFGD 63
Query: 403 --------------TPQQF----SSMVLELNASD-DRGIGIVRGQILSFASTR----TIF 513
T +F S ++++A D GIV ++ S++ + F
Sbjct: 64 SVDKVKADMIKPEGTNSEFVLCQSPHHMQISAPDLGTKDGIVTQYLIKQLSSQMGANSFF 123
Query: 514 KAGP--KLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFR 687
GP ++ + EAD ++ AQ LRR +EKY+ N R + C L IIP L+SRC R
Sbjct: 124 SKGPNYRVFTILEADVLSLKAQAGLRRTMEKYSNNSRLILHCEQLSSIIPPLRSRCLCIR 183
Query: 688 FAPLKQDQIVPRLQEIVTTEGVKMSEGGMKALLTWS 795
++++ L+ I +E +++ ++ ++T S
Sbjct: 184 VPLPSPEEVLQVLRFISNSENLQVPNNYLEQIVTES 219
>UniRef50_Q4FNB0 Cluster: DNA-directed DNA polymerase gamma/tau
subunit; n=2; Candidatus Pelagibacter ubique|Rep:
DNA-directed DNA polymerase gamma/tau subunit -
Pelagibacter ubique
Length = 557
Score = 72.1 bits (169), Expect = 2e-11
Identities = 56/209 (26%), Positives = 100/209 (47%), Gaps = 20/209 (9%)
Frame = +1
Query: 241 KYRPKRLDDLVSHDDIIKTINQFMKENQLPHL-LFYGPPGTGKTSTILACAKQMYTPQQF 417
KYRP+ +DL+ D + +TI+ +K N++P+ LF G G GKT+T AK +
Sbjct: 11 KYRPQTFNDLIGQDVVAETISNSIKANKVPNAYLFTGIRGIGKTTTARIVAKSLNCSNGI 70
Query: 418 SSM-------------------VLELNASDDRGIGIVRGQILSFASTRTIFKAGPKLIIL 540
++ VLE++A+ G+ VR ++ F+ A K+ I+
Sbjct: 71 DNLCKEELCENCNAISNSNHIDVLEMDAASKTGVDDVR-DLIEFSRYGPT-TAKYKIFII 128
Query: 541 DEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVP 720
DE ++ A NAL + +E+ E ++F + KI + SRC RF + +K ++
Sbjct: 129 DEVHMLSKQAFNALLKTLEEPPEYLKFIFATTEIKKIPITVVSRCQRFDLSRIKSLELFD 188
Query: 721 RLQEIVTTEGVKMSEGGMKALLTWSGGDM 807
+++I E S+ +K ++ S G +
Sbjct: 189 FIRKIKEKENGNASDDALKLIVKISEGSV 217
>UniRef50_A6NU34 Cluster: Putative uncharacterized protein; n=1;
Bacteroides capillosus ATCC 29799|Rep: Putative
uncharacterized protein - Bacteroides capillosus ATCC
29799
Length = 596
Score = 72.1 bits (169), Expect = 2e-11
Identities = 61/208 (29%), Positives = 96/208 (46%), Gaps = 19/208 (9%)
Frame = +1
Query: 241 KYRPKRLDDLVSHDDIIKTINQFMKENQLPHL-LFYGPPGTGKTST--ILACAKQMYTP- 408
K+RP+ DD+V I T+ + + +L H LF G GTGKT+ ILA A P
Sbjct: 8 KWRPRSFDDVVGQSHITDTLKRQVATGRLSHAYLFTGTRGTGKTTCAKILARAVNCEHPV 67
Query: 409 -----QQFSSM----------VLELNASDDRGIGIVRGQILSFASTRTIFKAGPKLIILD 543
Q S VLEL+A+ + G+ VR L + T ++ I+D
Sbjct: 68 DGNPCNQCPSCLGIENGSILDVLELDAASNNGVDQVRA--LRDEAVYTPAAVRKRVYIVD 125
Query: 544 EADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPR 723
E ++ A NAL +I+E+ E++ F + L K+ ++SRC +F F + I R
Sbjct: 126 EVHMLSTAAFNALLKILEEPPEHLMFILATTELHKVPATIKSRCQQFAFKRILPGDIARR 185
Query: 724 LQEIVTTEGVKMSEGGMKALLTWSGGDM 807
L + EG+ ++ G L + G +
Sbjct: 186 LSYVAEQEGIGLTSEGAALLARLADGGL 213
>UniRef50_Q58817 Cluster: Replication factor C small subunit (RFC
small subunit) (Clamp loader small subunit) [Contains:
Mja RFC-1 intein; Mja RFC-2 intein; Mja RFC- 3 intein];
n=1; Methanocaldococcus jannaschii|Rep: Replication
factor C small subunit (RFC small subunit) (Clamp loader
small subunit) [Contains: Mja RFC-1 intein; Mja RFC-2
intein; Mja RFC- 3 intein] - Methanococcus jannaschii
Length = 1847
Score = 72.1 bits (169), Expect = 2e-11
Identities = 31/61 (50%), Positives = 44/61 (72%)
Frame = +1
Query: 631 CNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKALLTWSGGDMX 810
CNY KIIP +QSRC FRF+PLK++ I +L+EI EG+ ++E G++A++ S GDM
Sbjct: 1668 CNYPSKIIPPIQSRCAVFRFSPLKKEDIAKKLKEIAEKEGLNLTESGLEAIIYVSEGDMR 1727
Query: 811 K 813
K
Sbjct: 1728 K 1728
Score = 70.5 bits (165), Expect = 5e-11
Identities = 33/66 (50%), Positives = 47/66 (71%)
Frame = +1
Query: 436 LNASDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEKYTENV 615
L+ SD+RGI ++R ++ FA T+ I K+I LDE+DA+T DAQNALRR +EKY++
Sbjct: 1060 LHNSDERGIDVIRTKVKDFARTKPIGDVPFKIIFLDESDALTADAQNALRRTMEKYSDVC 1119
Query: 616 RFCIIC 633
RF + C
Sbjct: 1120 RFILSC 1125
Score = 66.5 bits (155), Expect = 8e-10
Identities = 26/47 (55%), Positives = 36/47 (76%)
Frame = +1
Query: 235 VEKYRPKRLDDLVSHDDIIKTINQFMKENQLPHLLFYGPPGTGKTST 375
VEKYRPK LDD+V D+I+K + +++++ +PHLLF GPPG GK T
Sbjct: 10 VEKYRPKTLDDIVGQDEIVKRLKKYVEKKSMPHLLFSGPPGVGKCLT 56
>UniRef50_Q2RZH6 Cluster: DNA polymerase III, subunits gamma and
tau, putative; n=1; Salinibacter ruber DSM 13855|Rep:
DNA polymerase III, subunits gamma and tau, putative -
Salinibacter ruber (strain DSM 13855)
Length = 728
Score = 71.7 bits (168), Expect = 2e-11
Identities = 62/215 (28%), Positives = 95/215 (44%), Gaps = 22/215 (10%)
Frame = +1
Query: 223 FLRRVEKYRPKRLDDLVSHDDIIKTINQFMKENQLPHL-LFYGPPGTGKTST--ILACAK 393
+L KYRP ++V+ + + +T+ ++ +L H LF GP G GKT+ ILA A
Sbjct: 6 YLVTARKYRPSLFTEVVAQEHVTETLKNAIRMERLAHAYLFSGPRGVGKTTAARILAKAI 65
Query: 394 QMYTPQQFSSMVLELNASDDRGIGIVRGQILSF-----ASTRTI---------FKAGP-- 525
TP++ E D G+ L+ AS + + P
Sbjct: 66 NCETPREEREDGAEPCCECDSCESFEAGRSLNVFEMDAASNNKVDDIRELREKVRIPPQG 125
Query: 526 ---KLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAP 696
K+ ILDE ++ A NAL + +E+ + F K++P + SRC RF F
Sbjct: 126 DQKKVYILDEVHMLSKQAFNALLKTLEEPPAHALFIFATTEPHKVLPTILSRCQRFDFRR 185
Query: 697 LKQDQIVPRLQEIVTTEGVKMSEGGMKALLTWSGG 801
+ +IV RL+EI TEGV+ E + L G
Sbjct: 186 IPVPEIVQRLREICETEGVEADEESLMLLARKGNG 220
>UniRef50_Q2GDS0 Cluster: Putative DNA polymerase III, gamma/tau
subunit; n=1; Neorickettsia sennetsu str. Miyayama|Rep:
Putative DNA polymerase III, gamma/tau subunit -
Neorickettsia sennetsu (strain Miyayama)
Length = 396
Score = 71.7 bits (168), Expect = 2e-11
Identities = 51/214 (23%), Positives = 107/214 (50%), Gaps = 19/214 (8%)
Frame = +1
Query: 223 FLRRVEKYRPKRLDDLVSHDDIIKTINQFMKENQLPH-LLFYGPPGTGKTSTILACAKQM 399
++ KYRP+ LD++V D ++K ++ + +++ +L GP GTGKT+T A +
Sbjct: 3 YIGLANKYRPRLLDEIVGQDFLVKCLSASIARDEVAGAILLSGPYGTGKTTTARAVTLSL 62
Query: 400 YTPQQFSSM------------------VLELNASDDRGIGIVRGQILSFASTRTIFKAGP 525
+ S++ +LE++A+ + G+ VR ++ A + +
Sbjct: 63 LCLNRTSALPCLKCDSCISILSGSHPDILEIDAASNTGVEDVR-MLIEGALYKPLLSKY- 120
Query: 526 KLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQ 705
K I+DE ++ A +AL +++E+ ++V+F + L KI + SRC +R + L +
Sbjct: 121 KSYIVDEVHMLSQSAFSALLKLLEEPPQHVKFFLATTELQKIPATIISRCQHYRLSRLSR 180
Query: 706 DQIVPRLQEIVTTEGVKMSEGGMKALLTWSGGDM 807
I RL ++ E +++++ +K + + G +
Sbjct: 181 VVIAERLTQVAEKEQIEITQDAIKFIAEKADGSL 214
>UniRef50_Q1FKE1 Cluster: DNA polymerase III, subunits gamma and
tau; n=4; Clostridiales|Rep: DNA polymerase III,
subunits gamma and tau - Clostridium phytofermentans
ISDg
Length = 522
Score = 71.7 bits (168), Expect = 2e-11
Identities = 56/204 (27%), Positives = 95/204 (46%), Gaps = 19/204 (9%)
Frame = +1
Query: 223 FLRRVEKYRPKRLDDLVSHDDIIKTINQFMKENQLPHL-LFYGPPGTGKTST--ILA--- 384
++ K+RP +D+ D I+ T+ +K ++ H LF G GTGKT+ ILA
Sbjct: 3 YMALYRKFRPDTFEDVKGQDHIVTTLKNQIKAKRIGHAYLFCGTRGTGKTTVAKILAKTV 62
Query: 385 -------------CAKQMYTPQQFSSMVLELNASDDRGIGIVRGQILSFASTRTIFKAGP 525
CA Q S V+E++A+ + G+ +R + + T +
Sbjct: 63 NCEHPIDGNPCNECAMCKAIQSQSSMNVIEIDAASNNGVDNIREIVEEVKYSPT--EGNY 120
Query: 526 KLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQ 705
K+ I+DE ++ A NAL + +E+ V F + + KI + SRC R+ F +
Sbjct: 121 KVYIIDEVHMLSAGAFNALLKTLEEPPSYVIFILATTEVHKIPITILSRCQRYDFRRVTI 180
Query: 706 DQIVPRLQEIVTTEGVKMSEGGMK 777
D+I RL+ I EG++ E ++
Sbjct: 181 DEITKRLRVITEKEGIEAEEKALR 204
>UniRef50_Q58294 Cluster: Replication factor C large subunit; n=6;
Methanococcales|Rep: Replication factor C large subunit
- Methanococcus jannaschii
Length = 516
Score = 71.7 bits (168), Expect = 2e-11
Identities = 57/199 (28%), Positives = 94/199 (47%), Gaps = 8/199 (4%)
Frame = +1
Query: 235 VEKYRPKRLDDLVSHDDI---IKT-INQFMKENQLPHLLFYGPPGTGKTSTILACAKQMY 402
VEKYRPK L D+ H+ + +KT I ++K +L GPPG GKT+ A A
Sbjct: 5 VEKYRPKSLKDVAGHEKVKEKLKTWIESYLKGETPKPILLVGPPGCGKTTLAYALA---- 60
Query: 403 TPQQFSSMVLELNASDDRGIGIVRGQILSFASTRTIFKAGPK-LIILDEADAMTNDAQNA 579
+ V+ELNASD R ++ + A++ +IF G K LI+LDE D ++
Sbjct: 61 --NDYGFEVIELNASDKRNSSAIKKVVGHAATSSSIF--GKKFLIVLDEVDGISGKEDAG 116
Query: 580 LRRIIEKYTENVRFCIICNYLGKIIPALQSRCTR---FRFAPLKQDQIVPRLQEIVTTEG 750
+ K + + II P+++S + P+ + + L++I EG
Sbjct: 117 GVSELIKVIKKAKNPIILTANDAYAPSIRSLLPYVEVIQLNPVHTNSVYKVLKKIAEKEG 176
Query: 751 VKMSEGGMKALLTWSGGDM 807
+ + + +K + S GD+
Sbjct: 177 LDVDDKTLKMIAQHSAGDL 195
>UniRef50_Q0B0W5 Cluster: DNA-directed DNA polymerase; n=1;
Syntrophomonas wolfei subsp. wolfei str. Goettingen|Rep:
DNA-directed DNA polymerase - Syntrophomonas wolfei
subsp. wolfei (strain Goettingen)
Length = 499
Score = 71.3 bits (167), Expect = 3e-11
Identities = 59/215 (27%), Positives = 97/215 (45%), Gaps = 20/215 (9%)
Frame = +1
Query: 223 FLRRVEKYRPKRLDDLVSHDDIIKTINQFMKENQLPHL-LFYGPPGTGKTSTILACAKQM 399
+L +RP+R ++V + + + ++E +L H LF GP GTGKTS AK +
Sbjct: 3 YLALYRAWRPRRFAEVVGQEKTVTALRNAVREGKLSHAYLFSGPRGTGKTSIAKIIAKAV 62
Query: 400 YTPQ--------QFSSM----------VLELNASDDRGIGIVRGQILSFASTRTIFKAGP 525
Q SS V+E++A+ +RGI +R R + G
Sbjct: 63 NCENLSEGEPCNQCSSCQDINNGNFMDVIEIDAASNRGIDEIRDLR---EKVRVLPAQGK 119
Query: 526 -KLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLK 702
K+ I+DE +T +A NAL + IE+ + V F + KI ++SRC + F L
Sbjct: 120 NKVYIIDEVHMLTTEAFNALLKTIEEPPDAVIFILATTESHKIPATIRSRCQVYNFRRLT 179
Query: 703 QDQIVPRLQEIVTTEGVKMSEGGMKALLTWSGGDM 807
+I RL ++ +G+ + + L + G M
Sbjct: 180 TAEITERLSDVAANDGIILEPEALLLLARRANGGM 214
>UniRef50_Q22W14 Cluster: Replication factor C subunit, putative;
n=1; Tetrahymena thermophila SB210|Rep: Replication
factor C subunit, putative - Tetrahymena thermophila
SB210
Length = 358
Score = 71.3 bits (167), Expect = 3e-11
Identities = 55/189 (29%), Positives = 92/189 (48%), Gaps = 31/189 (16%)
Frame = +1
Query: 235 VEKYRPKRLDDLVSHDDIIKTINQFMKENQLPHLLFYGPPGTGKTSTILACAKQMY---- 402
V++ RPK LD L H + + + + PHLL YGP G GK + +A +++Y
Sbjct: 6 VDEIRPKSLDKLDYHPLLTEKLQKLAHSEDFPHLLLYGPNGAGKKTRAMAFLQEVYGNGV 65
Query: 403 -----TPQQF-----SSMVLELNA-------------SDDRGIGIVRGQILSFASTRTIF 513
++F +S +E+N ++++ +++ I AST +
Sbjct: 66 HKVKSEEREFKVNPNTSTTVEVNIISSNYHLDVTPADAENQDRAVIQKLIKEVASTHQLD 125
Query: 514 KAGP---KLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRF 684
K+II++E D +T +AQ +LRR +EKY R +I +G++I L+SRC
Sbjct: 126 PNSQRRFKVIIINEVDRLTLEAQASLRRTMEKYIGRCRLILIAENIGRVILPLRSRCLLI 185
Query: 685 RF-APLKQD 708
R AP +QD
Sbjct: 186 RVAAPSEQD 194
>UniRef50_Q5V1F7 Cluster: Replication factor C large subunit; n=5;
Halobacteriaceae|Rep: Replication factor C large subunit
- Haloarcula marismortui (Halobacterium marismortui)
Length = 508
Score = 71.3 bits (167), Expect = 3e-11
Identities = 55/197 (27%), Positives = 89/197 (45%), Gaps = 7/197 (3%)
Frame = +1
Query: 238 EKYRPKRLDDLVSHDDIIKTINQFMK--ENQLPHLLFYGPPGTGKTSTILACAKQMYTPQ 411
EKYRP L ++ +D + ++ + ++ ++ YG PG GKTS A A M P
Sbjct: 5 EKYRPTTLSEVRGNDKARDALKKWAETWDDHREAVILYGSPGIGKTSAAHALANDMEWP- 63
Query: 412 QFSSMVLELNASDDRG---IGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNAL 582
+ELNASD R I V G+ + T T G +L+I+DEAD + +A
Sbjct: 64 -----TIELNASDSRTKDVINRVAGEAAK-SGTLTAGGGGRRLVIMDEADNIHGNADRGG 117
Query: 583 RRIIEKYTENVR--FCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVK 756
R I + +I N ++ L++ C F + IVP L+++ EGV+
Sbjct: 118 ARAITALVKEASQPMILIANEYYEMSNGLRNNCQDIEFRDVSPRSIVPVLRDLCRQEGVE 177
Query: 757 MSEGGMKALLTWSGGDM 807
++ L + G +
Sbjct: 178 YESDALQELAEQNSGGL 194
>UniRef50_Q5UQE8 Cluster: Putative replication factor C small
subunit L478; n=1; Acanthamoeba polyphaga mimivirus|Rep:
Putative replication factor C small subunit L478 -
Mimivirus
Length = 370
Score = 70.9 bits (166), Expect = 4e-11
Identities = 55/210 (26%), Positives = 98/210 (46%), Gaps = 27/210 (12%)
Frame = +1
Query: 238 EKYRPKRLDDLVSHDDIIKTINQFMKENQLPHLLFYGPPGTGKTST------------IL 381
EKYRPK+ D + + D+++ + +PH++ GP G+GK + +
Sbjct: 5 EKYRPKKPSDFLFNTDVLRQLKYLASNEDVPHIIISGPSGSGKKTLVKFLLEFLYDEDVN 64
Query: 382 ACAKQMYTPQQFSSM----VLELN-------ASDDRGIGIVRGQILSFASTRT--IFKAG 522
K+ Y S+ +L+ N S + I++ I +A ++ IFK
Sbjct: 65 ILRKRKYNINGSSTKKEIEILQSNYHIIIEPTSTNHDKYILQEIIKQYAMHKSFDIFKTK 124
Query: 523 PKL--IILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAP 696
K I++ + + N++Q ALRR +E+Y + RF ++CN L KI+ L+SRC F
Sbjct: 125 RKFKTIVIHNIENLANNSQAALRRTMERYAKTCRFIMVCNNLSKIMDPLRSRCRTFCVPL 184
Query: 697 LKQDQIVPRLQEIVTTEGVKMSEGGMKALL 786
+ I + I E +K+++ K +L
Sbjct: 185 PTIENINTVVDYIAFMENIKLNKNDTKFIL 214
>UniRef50_P60373 Cluster: Replication factor C large subunit; n=1;
Nanoarchaeum equitans|Rep: Replication factor C large
subunit - Nanoarchaeum equitans
Length = 430
Score = 70.9 bits (166), Expect = 4e-11
Identities = 55/197 (27%), Positives = 99/197 (50%), Gaps = 8/197 (4%)
Frame = +1
Query: 241 KYRPKRLDDLVSHDDIIKTINQFM----KENQLPHLLFYGPPGTGKTSTILACAKQMYTP 408
KYRPK LD++ + + + + ++ K+ + LL YGPPGTGKTS++ A A ++
Sbjct: 36 KYRPKTLDEVENQEQAKQILRDYVINYKKKYKGKALLLYGPPGTGKTSSVYALANEL--- 92
Query: 409 QQFSSMVLELNASDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQ----N 576
VLE+NASD+R + + + + +F G ++I++DE D ++
Sbjct: 93 ---GYEVLEVNASDERDAIHIHHIVGEASKGKPLFHKG-RIILVDEVDGLSGKEDRGGVG 148
Query: 577 ALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVK 756
AL II++ + + C + + + L+ F L + L++IVT E +K
Sbjct: 149 ALVNIIKQSSWPI-ICTANDPWDQKLKKLREISIMVEFKRLSPKHVYNVLKKIVTNEKIK 207
Query: 757 MSEGGMKALLTWSGGDM 807
+S+ + + SGGD+
Sbjct: 208 ISDKILWDIAYKSGGDL 224
>UniRef50_Q0C591 Cluster: DNA polymerase III, subunits gamma and
tau; n=1; Hyphomonas neptunium ATCC 15444|Rep: DNA
polymerase III, subunits gamma and tau - Hyphomonas
neptunium (strain ATCC 15444)
Length = 578
Score = 50.0 bits (114), Expect(2) = 4e-11
Identities = 33/127 (25%), Positives = 62/127 (48%)
Frame = +1
Query: 427 VLELNASDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEKYT 606
VLEL+A+ G+ +R +L A + A K+ I+DE ++N + NAL + +E+
Sbjct: 128 VLELDAASRTGVADMR-DLLDSARYGPV-SARYKVYIIDEVHMLSNASFNALLKTLEEPP 185
Query: 607 ENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKALL 786
+++F + K+ + SRC RF L ++ L + +EG +SE + +
Sbjct: 186 PHLKFIFATTEIRKVPVTVLSRCQRFDLKRLDSGELSRHLGNVAQSEGANVSEEALALIA 245
Query: 787 TWSGGDM 807
+ G +
Sbjct: 246 RAAEGSV 252
Score = 40.7 bits (91), Expect(2) = 4e-11
Identities = 18/59 (30%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Frame = +1
Query: 241 KYRPKRLDDLVSHDDIIKTINQFMKENQLPH-LLFYGPPGTGKTSTILACAKQM-YTPQ 411
KYRP+R +DL+ + +++T++ + ++ H + G G GKT+T A+ + Y P+
Sbjct: 35 KYRPRRFEDLIGQEAMVRTLSNAFETGRIAHGFMLTGVRGVGKTTTARLLARGLNYEPK 93
>UniRef50_A5IZC8 Cluster: DNA polymerase III subunit gamma and TAU;
n=1; Mycoplasma agalactiae|Rep: DNA polymerase III
subunit gamma and TAU - Mycoplasma agalactiae
Length = 614
Score = 70.1 bits (164), Expect = 6e-11
Identities = 53/206 (25%), Positives = 93/206 (45%), Gaps = 17/206 (8%)
Frame = +1
Query: 241 KYRPKRLDDLVSHDDIIKTINQFMKENQLPHL-LFYGPPGTGKTSTILACAKQM---YTP 408
KYRPK DD+ D II+T+ ++ ++ H LF GP G GKTS A + +
Sbjct: 9 KYRPKCFDDVKGQDYIIQTLKNIIRNRKISHAYLFCGPRGVGKTSVARIFANLINCYHNN 68
Query: 409 QQFSSM-------------VLELNASDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEA 549
+S + ++E++A+ + G+ +R ++ K+ I+DE
Sbjct: 69 DDYSKLCQICEENGSNTIDIIEMDAASNNGVDSIRELRDKIQHLPSV--GNYKIYIIDEV 126
Query: 550 DAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQ 729
++ A NAL + +E+ +V F KI + SR RF F + D +V +++
Sbjct: 127 HMLSKGAFNALLKTLEEPPAHVIFIFATTDPQKIPLTILSRVQRFNFRRMSNDTLVKQIK 186
Query: 730 EIVTTEGVKMSEGGMKALLTWSGGDM 807
I+ EG+K + + + G M
Sbjct: 187 SILEQEGIKYDAEALPYIARLAVGSM 212
>UniRef50_A4XJ39 Cluster: DNA polymerase III, subunits gamma and
tau; n=1; Caldicellulosiruptor saccharolyticus DSM
8903|Rep: DNA polymerase III, subunits gamma and tau -
Caldicellulosiruptor saccharolyticus (strain ATCC 43494
/ DSM 8903)
Length = 535
Score = 70.1 bits (164), Expect = 6e-11
Identities = 53/194 (27%), Positives = 95/194 (48%), Gaps = 19/194 (9%)
Frame = +1
Query: 241 KYRPKRLDDLVSHDDIIKTINQFMKENQLPH-LLFYGPPGTGKTST--ILACAKQMYTPQ 411
KYRPK +D+V+ + I KT+ +K++++ H +F GP GTGKT+T I+A A P+
Sbjct: 8 KYRPKVFEDVVAQEHITKTLKNQIKQDKVAHAYIFTGPRGTGKTTTAKIMARAVNCLNPK 67
Query: 412 QFSSM----------------VLELNASDDRGIGIVRGQILSFASTRTIFKAGPKLIILD 543
+ VLE++A+ + + VR ++ K ++ I+D
Sbjct: 68 DGNPCNECEVCQSILNEKTLDVLEIDAASNTSVNDVRQIRDEVRYPPSMCKR--RVYIID 125
Query: 544 EADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPR 723
E ++ A NAL + +E+ + F + + K+ + SRC RF F + I R
Sbjct: 126 EVHMLSTGAFNALLKTLEEPPAHALFILATTDIQKVPATILSRCQRFDFKRISVKDIYER 185
Query: 724 LQEIVTTEGVKMSE 765
L+++V E + + +
Sbjct: 186 LKKVVELEKISIDD 199
>UniRef50_A0M2F5 Cluster: DNA polymerase III subunit gamma/tau;
n=14; Bacteroidetes|Rep: DNA polymerase III subunit
gamma/tau - Gramella forsetii (strain KT0803)
Length = 653
Score = 70.1 bits (164), Expect = 6e-11
Identities = 53/202 (26%), Positives = 85/202 (42%), Gaps = 7/202 (3%)
Frame = +1
Query: 223 FLRRVEKYRPKRLDDLVSHDDIIKTINQFMKENQLPH-LLFYGPPGTGKTSTILACAKQM 399
F+ KYRP+ D+V I T+ + N L LLF GP G GKT+ AK +
Sbjct: 4 FVVSARKYRPQTFKDVVGQQAITNTLANAINNNHLAQALLFTGPRGVGKTTCARILAKMI 63
Query: 400 YTPQ------QFSSMVLELNASDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMT 561
+ F+ + EL+A+ + + +R I + K+ I+DE ++
Sbjct: 64 NQKETQDPNEDFAFNIFELDAASNNSVDDIRNLIDQVRIPPQV--GNYKVYIIDEVHMLS 121
Query: 562 NDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVT 741
A NA + +E+ ++ F + KIIP + SRC F F + L I
Sbjct: 122 ASAFNAFLKTLEEPPKHAIFILATTEKHKIIPTILSRCQIFDFKRITVTDAKNYLAHIAE 181
Query: 742 TEGVKMSEGGMKALLTWSGGDM 807
EGV + + + + G M
Sbjct: 182 QEGVNAEDDALHIIAQKADGAM 203
>UniRef50_Q8YMK1 Cluster: DNA polymerase III gamma and tau subunits;
n=3; Nostocaceae|Rep: DNA polymerase III gamma and tau
subunits - Anabaena sp. (strain PCC 7120)
Length = 655
Score = 69.7 bits (163), Expect = 8e-11
Identities = 51/195 (26%), Positives = 96/195 (49%), Gaps = 21/195 (10%)
Frame = +1
Query: 241 KYRPKRLDDLVSHDDIIKTINQFMKENQL-PHLLFYGPPGTGKTSTILACAKQMYT---- 405
KYRPK +LV + I T+ ++ ++ P LF GP GTGKTS+ AK +
Sbjct: 9 KYRPKNFAELVGQEAIATTLTNAIRTAKIAPAYLFTGPRGTGKTSSARILAKSLNCLNSD 68
Query: 406 ----------------PQQFSSMVLELNASDDRGIGIVRGQILSFASTRTIFKAGPKLII 537
+ +S V+E++A+ + G+ +R +++ A + + K+ +
Sbjct: 69 KPTAEPCGVCDVCQGITKGYSLDVIEIDAASNTGVDNIR-ELIEKAQFAPV-QCRYKVYV 126
Query: 538 LDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIV 717
+DE +++ A NAL + +E+ +V F + +++P + SRC RF F ++ + +V
Sbjct: 127 IDECHMLSSAAFNALLKTLEEPPRHVVFVLATTDPQRVLPTIISRCQRFDFRRIQLEAMV 186
Query: 718 PRLQEIVTTEGVKMS 762
L I + E + +S
Sbjct: 187 KHLSAIASKENINIS 201
>UniRef50_Q2STA6 Cluster: DNA polymerase III gamma-tau subunits;
n=2; Mycoplasma|Rep: DNA polymerase III gamma-tau
subunits - Mycoplasma capricolum subsp. capricolum
(strain California kid / ATCC27343 / NCTC 10154)
Length = 669
Score = 69.7 bits (163), Expect = 8e-11
Identities = 56/207 (27%), Positives = 96/207 (46%), Gaps = 19/207 (9%)
Frame = +1
Query: 244 YRPKRLDDLVSHDDIIKTINQFMKENQLPH-LLFYGPPGTGKTSTILACAKQMYTPQQFS 420
YRPK + + H+ I + + + +K+N++ H LLF G GTGKTS AK +
Sbjct: 12 YRPKDFNSVAGHNSIKEILEKQIKDNRINHALLFSGQRGTGKTSVARIFAKTVNCLNLTG 71
Query: 421 SM------------------VLELNASDDRGIGIVRGQILSFASTRTIFKAGPKLIILDE 546
S ++E++A+ + G+ +R +I + ST I + K+ I+DE
Sbjct: 72 SKACEQCNNCKLANENQLIDIIEIDAASNNGVDEIR-EIKNSVSTLPI-NSKYKVYIIDE 129
Query: 547 ADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRL 726
+T A NAL + +E+ F + KI + SRC F F + ++ + RL
Sbjct: 130 VHMLTKQAFNALLKTLEEPPVYTIFILATTEFNKIPQTILSRCQIFNFTKIDKNSLKNRL 189
Query: 727 QEIVTTEGVKMSEGGMKALLTWSGGDM 807
Q IV E ++ + + + S G +
Sbjct: 190 QYIVNQENYQIEKEVLDEIFYLSEGSL 216
>UniRef50_Q1EZ15 Cluster: DNA polymerase III, subunits gamma and
tau; n=2; Clostridiaceae|Rep: DNA polymerase III,
subunits gamma and tau - Clostridium oremlandii OhILAs
Length = 563
Score = 69.3 bits (162), Expect = 1e-10
Identities = 57/206 (27%), Positives = 95/206 (46%), Gaps = 19/206 (9%)
Frame = +1
Query: 241 KYRPKRLDDLVSHDDIIKTINQFMKENQLPHL-LFYGPPGTGKTST--ILACAKQMYTPQ 411
++RPK +D++ D +I + + + + H LF G GTGKTST I A A + +
Sbjct: 9 RFRPKVFEDVIGQDQVITILKNQISSSNIAHAYLFTGTRGTGKTSTAKIFARAVNCLSAE 68
Query: 412 QFSSM----------------VLELNASDDRGIGIVRGQILSFASTRTIFKAGPKLIILD 543
+ V+E++A+ + G+ VR +I K K+ I+D
Sbjct: 69 DANPCNQCEVCEGILTENIMDVIEIDAASNNGVDNVR-EIRENVKYPPS-KGKYKIYIID 126
Query: 544 EADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPR 723
E ++ A NAL + +E+ V F + KI + SRC RF F P++ + I+ R
Sbjct: 127 EVHMLSTGAFNALLKTLEEPPSYVIFILATTEPHKIPATILSRCQRFDFKPVRINDIMKR 186
Query: 724 LQEIVTTEGVKMSEGGMKALLTWSGG 801
L+ I G+K E ++ + S G
Sbjct: 187 LESICEDIGIKTEEEALRLIALNSDG 212
>UniRef50_A6GJ36 Cluster: DNA polymerase III, gamma and tau
subunits; n=1; Plesiocystis pacifica SIR-1|Rep: DNA
polymerase III, gamma and tau subunits - Plesiocystis
pacifica SIR-1
Length = 747
Score = 69.3 bits (162), Expect = 1e-10
Identities = 53/212 (25%), Positives = 95/212 (44%), Gaps = 17/212 (8%)
Frame = +1
Query: 223 FLRRVEKYRPKRLDDLVSHDDIIKTINQFMKENQLPH-LLFYGPPGTGKTSTILACAKQM 399
+L KYRP+R D++ + + +T+ +K +++ H LF G G GKT+ AK +
Sbjct: 3 YLALARKYRPQRFADMIGQEHVTRTLENAIKSDRVHHAYLFCGVRGLGKTTAARILAKCL 62
Query: 400 Y-----TPQQFSSMVLELNASDDRGIGIVRGQILSFASTRTIFK-----------AGPKL 531
TP+ + V + ++ R + ++ S S I A K+
Sbjct: 63 VCEHGPTPEPCNQCVHCVGINEGRSVDVIEIDGASNNSVDDIRSLRDQVHYLPQIARRKI 122
Query: 532 IILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQ 711
I+DE +T A NAL + +E+ +V F K++P + SR +R + ++
Sbjct: 123 YIIDEVHMLTQAAFNALLKTLEEPPPHVTFLFATTDPHKVLPTILSRVSRLDYRRVRAAT 182
Query: 712 IVPRLQEIVTTEGVKMSEGGMKALLTWSGGDM 807
+VP LQ I+ EG + G+ + G +
Sbjct: 183 LVPYLQFILEQEGFAVEPEGLYVIARCGDGSV 214
>UniRef50_Q8ZSE1 Cluster: DNA polymerase III gamma and tau subunits;
n=2; Nostocaceae|Rep: DNA polymerase III gamma and tau
subunits - Anabaena sp. (strain PCC 7120)
Length = 429
Score = 68.9 bits (161), Expect = 1e-10
Identities = 58/212 (27%), Positives = 97/212 (45%), Gaps = 23/212 (10%)
Frame = +1
Query: 241 KYRPKRLDDLVSHDDIIKT-INQFMKENQLPHLLFYGPPGTGKTSTILACAKQMYTPQQ- 414
KYRP+ L +++ + I++T IN + P LF GP GTGKTST AK +
Sbjct: 8 KYRPQILSEVIGQEHIVRTLINAIAFQKIAPAYLFSGPKGTGKTSTARIIAKSLNCQSSN 67
Query: 415 ------------------FSSM-VLELNASDDRGIGIVRGQI--LSFASTRTIFKAGPKL 531
SS+ V EL+A+ + G+ ++R I FA + F K+
Sbjct: 68 EPTTKPCGECNSCKGITASSSVDVTELDAASNSGVELIRELISTTQFAPVESRF----KI 123
Query: 532 IILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQ 711
I+DE A+++ + AL + IE +V F L K+ + SRC +F F +
Sbjct: 124 FIIDECHALSSQSWQALLKTIESPPRHVVFIFCTTELHKVPETIVSRCQKFDFKRVPVSL 183
Query: 712 IVPRLQEIVTTEGVKMSEGGMKALLTWSGGDM 807
+ L++I E + ++ + A+ + G +
Sbjct: 184 VASYLEKISHQESINIAPSAVTAVAKANKGHL 215
>UniRef50_Q74GZ9 Cluster: DNA polymerase III, gamma and tau
subunits; n=4; Deltaproteobacteria|Rep: DNA polymerase
III, gamma and tau subunits - Geobacter sulfurreducens
Length = 579
Score = 68.9 bits (161), Expect = 1e-10
Identities = 54/216 (25%), Positives = 98/216 (45%), Gaps = 21/216 (9%)
Frame = +1
Query: 223 FLRRVEKYRPKRLDDLVSHDDIIKTINQFMKENQLPH-LLFYGPPGTGKTSTILACAKQM 399
+L K+RP+ DL + + +T+ + ++ H LF G G GKTS+ AK +
Sbjct: 3 YLVLARKWRPQTFSDLTGQEHVSRTLQNAIDSGRIAHAFLFTGARGVGKTSSARILAKAL 62
Query: 400 YTPQQFSSM------------------VLELNASDDRGIGIVRG--QILSFASTRTIFKA 519
Q S VLE++ + + G+ +R + + + +R +K
Sbjct: 63 NCEQGMSPEPCNVCPACTEITAGTSVDVLEIDGASNTGVDDIRELRENVKYLPSRLRYK- 121
Query: 520 GPKLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPL 699
+ I+DE ++ +A NAL + +E+ +V+F K+ + SRC RF F +
Sbjct: 122 ---IFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKLPITILSRCQRFDFRRI 178
Query: 700 KQDQIVPRLQEIVTTEGVKMSEGGMKALLTWSGGDM 807
++V RL+ IV EG+ +S+ + + G M
Sbjct: 179 PLAKVVARLRYIVDREGISISDESLAVVARKGDGSM 214
>UniRef50_Q41AZ0 Cluster: DNA-directed DNA polymerase; n=1;
Exiguobacterium sibiricum 255-15|Rep: DNA-directed DNA
polymerase - Exiguobacterium sibiricum 255-15
Length = 561
Score = 68.9 bits (161), Expect = 1e-10
Identities = 57/207 (27%), Positives = 96/207 (46%), Gaps = 19/207 (9%)
Frame = +1
Query: 244 YRPKRLDDLVSHDDIIKTINQFMKENQLPHL-LFYGPPGTGKTSTILACAKQMYTPQQ-- 414
YRP+R D++V I +TI + E ++ H LF GP GTGKTS AK + Q
Sbjct: 10 YRPQRFDEVVGQAHITRTIQNALMEERMSHAYLFSGPRGTGKTSLAKIIAKAINCEQAPV 69
Query: 415 ----------------FSSMVLELNASDDRGIGIVRGQILSFASTRTIFKAGPKLIILDE 546
S V E++A+ + G+ +R +I +A K+ I+DE
Sbjct: 70 NEPCNECPTCRAITEGSSPDVFEIDAASNNGVDEIR-EIRDKVKYPP-SEAAYKVYIIDE 127
Query: 547 ADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRL 726
++ A NAL + +E+ + F + KI + SRC RF + DQ++ R+
Sbjct: 128 VHMLSTGAFNALLKTLEEPPAHAIFILATTEPHKIPATIISRCQRFDVKRHEVDQLMERM 187
Query: 727 QEIVTTEGVKMSEGGMKALLTWSGGDM 807
Q I++ + + +E ++ + + G M
Sbjct: 188 QYILSDQTIGYTETALRLIARAADGGM 214
>UniRef50_Q1K472 Cluster: DNA polymerase III, subunits gamma and
tau; n=4; Desulfuromonadales|Rep: DNA polymerase III,
subunits gamma and tau - Desulfuromonas acetoxidans DSM
684
Length = 597
Score = 68.9 bits (161), Expect = 1e-10
Identities = 57/216 (26%), Positives = 100/216 (46%), Gaps = 21/216 (9%)
Frame = +1
Query: 223 FLRRVEKYRPKRLDDLVSHDDIIKTINQFMKENQLPH-LLFYGPPGTGKTSTILACAK-- 393
+L K+RP+ DLV + + +T+ + ++ H LF G G GKTS AK
Sbjct: 3 YLVMARKWRPQTFADLVGQEHVSRTLANAIASGRVHHAFLFTGARGVGKTSAARILAKAL 62
Query: 394 ------------QMYTPQQFSSM----VLELNASDDRGIGIVRG--QILSFASTRTIFKA 519
Q ++ SS V E++ + + G+ VR + L + ++ +K
Sbjct: 63 NCENGPSAEPCNQCQHCEEISSGHSVDVFEIDGASNTGVDDVRELRETLRYMPSQCRYK- 121
Query: 520 GPKLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPL 699
+ I+DE ++ +A NAL + +E+ E+V+F KI + SRC RF F +
Sbjct: 122 ---IFIIDEVHMLSINAFNALLKTLEEPPEHVKFIFATTEPHKIPVTILSRCQRFDFRKI 178
Query: 700 KQDQIVPRLQEIVTTEGVKMSEGGMKALLTWSGGDM 807
++V +L+ IV E + +S+ + + GG M
Sbjct: 179 PAPKVVAQLRRIVDAENITISDRALALIAQRGGGSM 214
>UniRef50_A7GZC8 Cluster: Protein EbsC; n=13; Campylobacter|Rep:
Protein EbsC - Campylobacter curvus 525.92
Length = 553
Score = 68.9 bits (161), Expect = 1e-10
Identities = 53/206 (25%), Positives = 97/206 (47%), Gaps = 17/206 (8%)
Frame = +1
Query: 241 KYRPKRLDDLVSHDDIIKTINQFMKENQLPHL-LFYGPPGTGKTSTILACAKQMYTPQQF 417
KYRPK D+L+ + + K++ + E ++ H LF G G+GKTS+ +K + +
Sbjct: 7 KYRPKNFDELIGQEAVSKSLTHALDEGRISHAYLFSGLRGSGKTSSARIFSKALVCEKGP 66
Query: 418 SSMVLE-----LNASDDRGIGIVRGQILSFAST--------RTIFK---AGPKLIILDEA 549
+S E + A++ R + I+ S +T +K A K+ I+DE
Sbjct: 67 TSRPCETCPQCIMANESRHMDIIEMDAASHRKIDDIRELIEQTKYKPAMARYKIFIIDEV 126
Query: 550 DAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQ 729
+T +A NAL + +E+ V+F + K+ + SR FRF + ++ I+ L+
Sbjct: 127 HMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATVLSRTQHFRFKQIGKNSIIKHLE 186
Query: 730 EIVTTEGVKMSEGGMKALLTWSGGDM 807
I++ EG+ ++ L G +
Sbjct: 187 FILSKEGISYEREALEILARSGRGSL 212
>UniRef50_A7BAA1 Cluster: Putative uncharacterized protein; n=1;
Actinomyces odontolyticus ATCC 17982|Rep: Putative
uncharacterized protein - Actinomyces odontolyticus ATCC
17982
Length = 967
Score = 68.5 bits (160), Expect = 2e-10
Identities = 55/212 (25%), Positives = 103/212 (48%), Gaps = 23/212 (10%)
Frame = +1
Query: 241 KYRPKRLDDLVSHDDIIKTINQFMKENQLPHL-LFYGPPGTGKTST--ILA----CA--- 390
+YRP D ++ + + + + ++ N++ H LF GP G GKT++ ILA CA
Sbjct: 8 RYRPDTFDQVIGQEHVTEPLKAALRANRVTHAYLFSGPRGCGKTTSARILARCLNCAQGP 67
Query: 391 -----------KQMYTPQQFSSMVLELNASDDRGIGIVRG--QILSFASTRTIFKAGPKL 531
+++ T S V+E++A+ G+ R + +FA R +K +
Sbjct: 68 TDTPCGQCESCRELATGGPGSLDVVEIDAASHGGVDDARDLRERATFAPVRDRYK----I 123
Query: 532 IILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQ 711
I+DEA +TN NAL +++E+ E+V+F ++I ++SR + F + D
Sbjct: 124 FIIDEAHMVTNQGFNALLKLVEEPPEHVKFVFATTEPERVIGTIRSRTHHYPFRLVPPDV 183
Query: 712 IVPRLQEIVTTEGVKMSEGGMKALLTWSGGDM 807
+ P L + + E + + EG + ++ GG +
Sbjct: 184 LGPYLTGLCSEEHIGVGEGVLTLVMRAGGGSV 215
>UniRef50_Q7QR65 Cluster: GLP_301_13398_14519; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_301_13398_14519 - Giardia lamblia
ATCC 50803
Length = 373
Score = 68.5 bits (160), Expect = 2e-10
Identities = 51/191 (26%), Positives = 91/191 (47%), Gaps = 24/191 (12%)
Frame = +1
Query: 241 KYRPKRLDDLVSHDDIIKTINQFMKENQLPHLLFYGPPGTGKTSTILACAKQMYTPQQF- 417
KY P +L+ + H D + + PHLL +GP G+G+ + +L + +Y Q
Sbjct: 5 KYTPTQLEAMDYHCDATRLFISVARAKNPPHLLVHGPRGSGRHTRVLGYIRSVYGVQTLD 64
Query: 418 ---SSMV------------------LELNASD--DRGIGIVRGQILSFASTRTIFKAGPK 528
S+M+ LELN S+ + + I++ + AST +I K
Sbjct: 65 YIPSTMLYETNTDTCEVNILSTACHLELNPSEMGNHDVFIIQTVLKETASTSSIGDKF-K 123
Query: 529 LIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQD 708
+++L +AD ++ AQ ALRR++E+Y + ++ + +IP + SRC R +
Sbjct: 124 VVVLQDADKLSFTAQQALRRLMEQYAATCKLILMAESISGLIPPIVSRCFCIRVPGFSDE 183
Query: 709 QIVPRLQEIVT 741
+IV L+ +T
Sbjct: 184 EIVHALETTIT 194
>UniRef50_Q7M7T5 Cluster: DNA POLYMERASE III SUBUNITS GAMMA AND TAU;
n=4; Epsilonproteobacteria|Rep: DNA POLYMERASE III
SUBUNITS GAMMA AND TAU - Wolinella succinogenes
Length = 544
Score = 68.1 bits (159), Expect = 2e-10
Identities = 56/206 (27%), Positives = 92/206 (44%), Gaps = 17/206 (8%)
Frame = +1
Query: 241 KYRPKRLDDLVSHDDIIKTINQFMKENQLPHL-LFYGPPGTGKTSTILACAKQMYTPQQF 417
KYRP R +DL+ D I +T++ + +L H LF G G+GKTS+ +K + Q
Sbjct: 8 KYRPTRFEDLIGQDPISQTLSLALDSGRLSHAYLFSGLRGSGKTSSARIFSKALNCAQGP 67
Query: 418 SSMVLE-----LNASDDRGIGIVRGQILSFASTRTI------FKAGP-----KLIILDEA 549
SS + L A + R + I+ S I K P K+ I+DE
Sbjct: 68 SSTPCDVCENCLAAKEGRHMDIIEMDAASSRKIDDIRDLIEQTKYHPAMGRFKIFIIDEV 127
Query: 550 DAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQ 729
+T +A NAL + +E+ V+F + K+ + SR FRF + ++ +Q
Sbjct: 128 HMLTKEAFNALLKTLEEPPPYVKFILATTDPLKLPATILSRTQHFRFKKIAHRDVIAHIQ 187
Query: 730 EIVTTEGVKMSEGGMKALLTWSGGDM 807
+I+ E V ++ + GG +
Sbjct: 188 KILHLENVPFEPEALEMIARSGGGSL 213
>UniRef50_Q26BL4 Cluster: ATPase related to the helicase subunit of
the holliday junction resolvase; n=8; Bacteria|Rep:
ATPase related to the helicase subunit of the holliday
junction resolvase - Flavobacteria bacterium BBFL7
Length = 431
Score = 68.1 bits (159), Expect = 2e-10
Identities = 55/202 (27%), Positives = 97/202 (48%), Gaps = 9/202 (4%)
Frame = +1
Query: 238 EKYRPKRLDDLVSHDDIIK---TINQFMKENQLPHLLFYGPPGTGKTSTILACAKQMYTP 408
E+ RP+ L + +S + ++ T+ Q + +P L+ +GPPGTGKT+ A++ P
Sbjct: 8 ERIRPQNLSEYLSQNHLVGERGTLRQHILNGTIPSLILWGPPGTGKTTLANIIAQESKRP 67
Query: 409 QQFSSMVLELNASDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRR 588
S + + G+ VR I S +F A ++ +DE + Q++L
Sbjct: 68 FYTLSAI-------NSGVKDVREVIDKAKSAGGLFTAKNPILFIDEIHRFSKSQQDSLLA 120
Query: 589 IIEKYTENVRFCIICNYLGKIIPALQSRCTRF---RFAPLKQDQIVPR---LQEIVTTEG 750
+EK + N ++IPAL SRC + FA +Q++ R + E+++ +
Sbjct: 121 AVEKGWVTLIGATTENPSFEVIPALLSRCQVYVLDAFAKADLEQLLHRALKIDEVLSIKD 180
Query: 751 VKMSEGGMKALLTWSGGDMXKV 816
+ + E +ALL SGGD K+
Sbjct: 181 ITIQE--TEALLRISGGDARKL 200
>UniRef50_A0RRQ8 Cluster: ATPase, AAA family; n=3;
Campylobacter|Rep: ATPase, AAA family - Campylobacter
fetus subsp. fetus (strain 82-40)
Length = 397
Score = 68.1 bits (159), Expect = 2e-10
Identities = 53/187 (28%), Positives = 87/187 (46%)
Frame = +1
Query: 244 YRPKRLDDLVSHDDIIKTINQFMKENQLPHLLFYGPPGTGKTSTILACAKQMYTPQQFSS 423
+RP ++D+V DI++ ++F+K ++PH LF+G G GKT+ AKQM + F
Sbjct: 7 FRPNNINDMVGQKDIVELFSKFIKSKKIPHSLFFGATGCGKTTMAKIIAKQM-NYEFFEL 65
Query: 424 MVLELNASDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEKY 603
L + D R +I+S T T++K LI +DE ++ Q L +EK
Sbjct: 66 DGANLKSEDIR-------KIISKFET-TLYK---PLIFIDEFHRLSKTQQETLLIPMEKG 114
Query: 604 TENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKAL 783
V N + ++SR F F PL D++ L ++ +++ L
Sbjct: 115 KCIVMGATTENPKFVVSSGIRSRMMIFEFKPLSHDELTILLTKVQNVIKFEITNEAKDYL 174
Query: 784 LTWSGGD 804
+ SGGD
Sbjct: 175 INSSGGD 181
>UniRef50_Q6RHU1 Cluster: Gp44 clamp loader subunit; n=2; T4-like
viruses|Rep: Gp44 clamp loader subunit - Aeromonas phage
65
Length = 326
Score = 68.1 bits (159), Expect = 2e-10
Identities = 53/178 (29%), Positives = 83/178 (46%), Gaps = 2/178 (1%)
Frame = +1
Query: 238 EKYRPKRLDDLVSHDDIIKTINQFMKENQLPHLLFYGP-PGTGKTSTILACAKQMYTPQQ 414
+KYRP+ + + + + N +K+ + PHLL PGTGKT+ +A +
Sbjct: 13 QKYRPQSISECILPRHDMDRFNGLVKKGKFPHLLLCSKSPGTGKTTVAMALVNDIDAEMM 72
Query: 415 FSSMVLELNASDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEAD-AMTNDAQNALRRI 591
F + +L +D +R Q+ FA+T T K G K+II+DE D LR
Sbjct: 73 FITGG-QLRIND------LRTQLTEFANTST-RKKGGKVIIIDEGDNTNMRSVHEELRSW 124
Query: 592 IEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSE 765
+E Y++N + CN I AL+SR F F +IV E+V + +M +
Sbjct: 125 MEAYSDNCSIIMTCNNAEVIPEALKSRFRVFEFG-----RIVEETPELVKADETRMKK 177
>UniRef50_P38251 Cluster: Replication factor C subunit 5; n=12;
Saccharomycetales|Rep: Replication factor C subunit 5 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 354
Score = 68.1 bits (159), Expect = 2e-10
Identities = 32/95 (33%), Positives = 60/95 (63%), Gaps = 1/95 (1%)
Frame = +1
Query: 526 KLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQ 705
K +I++EA+++T DAQ ALRR +EKY++N+R ++C+ + II ++SRC R
Sbjct: 136 KCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSRCLLIRCPAPSD 195
Query: 706 DQIVPRLQEIVTTEGVKM-SEGGMKALLTWSGGDM 807
+I L ++VT E +++ ++ +K + S G++
Sbjct: 196 SEISTILSDVVTNERIQLETKDILKRIAQASNGNL 230
Score = 49.2 bits (112), Expect = 1e-04
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Frame = +1
Query: 235 VEKYRPKRLDDLVSHDDIIKTINQFMKE-NQLPHLLFYGPPGTGKTSTILACAKQMYTP 408
V+KYRPK L+ L ++++ + + LPHLL YGP GTGK + +A + ++ P
Sbjct: 5 VDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGP 63
>UniRef50_Q1IQ74 Cluster: DNA polymerase III, subunits gamma and
tau; n=1; Acidobacteria bacterium Ellin345|Rep: DNA
polymerase III, subunits gamma and tau - Acidobacteria
bacterium (strain Ellin345)
Length = 632
Score = 67.7 bits (158), Expect = 3e-10
Identities = 57/210 (27%), Positives = 100/210 (47%), Gaps = 21/210 (10%)
Frame = +1
Query: 241 KYRPKRLDDLVSHDDIIKTINQFMKENQLPH-LLFYGPPGTGKTST--ILACAKQMYTPQ 411
KYRP++ +++ D + +T+ +++ ++ H +F G G GKT+ ILA A +
Sbjct: 9 KYRPQKFSEVIGQDHVTRTLKNAIEQQRIAHGYIFSGHRGIGKTTIARILAMALNCQSAD 68
Query: 412 QFSSM------------------VLELNASDDRGIGIVRGQILSFASTRTIFKAGPKLII 537
S V+E++A+ +RGI +R ++ A R + K+ I
Sbjct: 69 HPVSEPCGVCDSCKEVKAGQSVDVIEIDAATNRGIDEIR-ELREAARYRPA-RDRFKIYI 126
Query: 538 LDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIV 717
LDEA +T+ A NAL + +E+ ++ F + I ++SRC F F +K D IV
Sbjct: 127 LDEAHQITDAAFNALLKTLEEPPGHIVFMMATTEPEDIPQTIRSRCQHFSFHAVKFDDIV 186
Query: 718 PRLQEIVTTEGVKMSEGGMKALLTWSGGDM 807
+L++I EG+ + + L G M
Sbjct: 187 LQLRDIAGKEGIGAEDDALAMLAEAGDGSM 216
>UniRef50_A6QCT9 Cluster: ATPase, AAA family; n=22;
Epsilonproteobacteria|Rep: ATPase, AAA family -
Sulfurovum sp. (strain NBC37-1)
Length = 393
Score = 67.7 bits (158), Expect = 3e-10
Identities = 52/192 (27%), Positives = 89/192 (46%), Gaps = 3/192 (1%)
Frame = +1
Query: 241 KYRPKRLDDLVSHDDII---KTINQFMKENQLPHLLFYGPPGTGKTSTILACAKQMYTPQ 411
KYRPK LD++V ++ + + ++ + LPH+ YGPPG GKT+ A Q+ P
Sbjct: 7 KYRPKTLDEMVGQRHLLGEEAPLRKLIEADALPHIFLYGPPGCGKTTLARIIATQLGRP- 65
Query: 412 QFSSMVLELNASDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRI 591
E+NA+ + I +R +A+ LI +DE ++ + Q L
Sbjct: 66 -----FYEMNATTLK-IDDLRKIFKEYANA-----LQKPLIFIDEVHRLSKNQQEVLLPF 114
Query: 592 IEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGG 771
+E V N + A++SR F LKQ ++ L +I+ + + + E
Sbjct: 115 MENNAALVIGASTENPYYSLTAAMRSRSHLFELEALKQKEMQDYLAKIIALQAMDVEEDA 174
Query: 772 MKALLTWSGGDM 807
++ L+ SGGD+
Sbjct: 175 VEYLVFSSGGDV 186
>UniRef50_Q74L01 Cluster: DNA polymerase III subunit gamma/tau; n=7;
Lactobacillus|Rep: DNA polymerase III subunit gamma/tau
- Lactobacillus johnsonii
Length = 602
Score = 67.3 bits (157), Expect = 4e-10
Identities = 54/210 (25%), Positives = 97/210 (46%), Gaps = 21/210 (10%)
Frame = +1
Query: 241 KYRPKRLDDLVSHDDIIKTINQFMKENQLPH-LLFYGPPGTGKTST--ILA--------- 384
K+RP+ D +V I T+ +K ++ H LF GP GTGKTS I A
Sbjct: 9 KWRPRTFDGVVGQTAITDTLKNAIKRGKISHAFLFAGPRGTGKTSCAKIFAKALNCTNLQ 68
Query: 385 -------CAKQMYTPQQFSSMVLELNASDDRGIGIVRG--QILSFASTRTIFKAGPKLII 537
C + Q + ++E++A+ + G+ +R + +A T+ +K + I
Sbjct: 69 DGEPCNECENCLAADQGTMNDIIEIDAASNNGVDEIRDIRDKVKYAPTQGKYK----VYI 124
Query: 538 LDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIV 717
+DE ++ A NAL + +E+ E+V F + L K+ + SR R+ F + Q ++
Sbjct: 125 IDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRIDQHDLI 184
Query: 718 PRLQEIVTTEGVKMSEGGMKALLTWSGGDM 807
R+ I+ E + E ++ + + G M
Sbjct: 185 ARMTYILGQEKIDFEEKALEVIAQVADGGM 214
>UniRef50_Q9PR58 Cluster: DNA polymerase III gamma-tau subunits;
n=1; Ureaplasma parvum|Rep: DNA polymerase III gamma-tau
subunits - Ureaplasma parvum (Ureaplasma urealyticum
biotype 1)
Length = 597
Score = 66.5 bits (155), Expect = 8e-10
Identities = 54/206 (26%), Positives = 94/206 (45%), Gaps = 19/206 (9%)
Frame = +1
Query: 241 KYRPKRLDDLVSHDDIIKTINQFMKENQLPHL-LFYGPPGTGKTST--ILACAKQMYTP- 408
KYRP + +++ D I + + N++ H +F GP G GKTS I A + P
Sbjct: 9 KYRPHKFKNVIGQDLIKQALMNACLNNKITHAYIFSGPRGIGKTSIARIFASSINCLNPN 68
Query: 409 ---------------QQFSSMVLELNASDDRGIGIVRGQILSFASTRTIFKAGPKLIILD 543
++ S ++EL+A+ + G+ +R + T FK K+ I+D
Sbjct: 69 KGDCCGKCSVCESILKEQSVDLIELDAASNNGVDQIRIITDNINYLPTFFKY--KVYIID 126
Query: 544 EADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPR 723
EA ++ A NAL + +E+ ++V F KI + SRC R+ F L ++
Sbjct: 127 EAHMLSTSAWNALLKTVEEPPQHVIFIFATTEYQKIPLTIISRCQRYDFKRLNNSELQEL 186
Query: 724 LQEIVTTEGVKMSEGGMKALLTWSGG 801
+ I+T E +K+ + L+ + G
Sbjct: 187 IDSILTKEDIKIDNNAIDKLIQLADG 212
>UniRef50_A3DHB9 Cluster: DNA polymerase III, subunits gamma and
tau; n=1; Clostridium thermocellum ATCC 27405|Rep: DNA
polymerase III, subunits gamma and tau - Clostridium
thermocellum (strain ATCC 27405 / DSM 1237)
Length = 547
Score = 66.5 bits (155), Expect = 8e-10
Identities = 55/212 (25%), Positives = 95/212 (44%), Gaps = 19/212 (8%)
Frame = +1
Query: 223 FLRRVEKYRPKRLDDLVSHDDIIKTINQFMKENQLPHL-LFYGPPGTGKTST--ILACAK 393
+L K+RP +D+V + +++T+ + ++ H LF G GTGKT+ I + A
Sbjct: 3 YLALYRKWRPLVFEDVVEQEHVVRTLRNSICSGRIAHAYLFCGTRGTGKTTMAKIFSRAV 62
Query: 394 QMYTPQQFSSM----------------VLELNASDDRGIGIVRGQILSFASTRTIFKAGP 525
P+ V+E++A+ + + +R +L T KA
Sbjct: 63 NCLNPKDGDPCNQCEICQGILNGSLLDVIEIDAASNNSVDDIR--VLRDEVIYTPSKARY 120
Query: 526 KLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQ 705
K+ I+DE ++ A NAL + +E+ +V F + K+ + SRC RF F +
Sbjct: 121 KVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKLPATILSRCQRFDFRRIPV 180
Query: 706 DQIVPRLQEIVTTEGVKMSEGGMKALLTWSGG 801
D IV R++ I GV++ K + S G
Sbjct: 181 DSIVKRIEYIAKESGVEIRREASKLIAKLSDG 212
>UniRef50_A2A0B1 Cluster: DNA polymerase III subunit gamma/tau; n=1;
Microscilla marina ATCC 23134|Rep: DNA polymerase III
subunit gamma/tau - Microscilla marina ATCC 23134
Length = 575
Score = 66.5 bits (155), Expect = 8e-10
Identities = 60/216 (27%), Positives = 91/216 (42%), Gaps = 21/216 (9%)
Frame = +1
Query: 223 FLRRVEKYRPKRLDDLVSHDDIIKTINQFMKENQLPH-LLFYGPPGTGKTST--ILACAK 393
F+ KYRP D +V I T+ +K NQL LF GP G GKT+ ILA
Sbjct: 4 FVVSARKYRPATFDTVVGQSHITTTLKNAIKSNQLAQAFLFCGPRGVGKTTCARILAKTI 63
Query: 394 QMYTP-----------------QQFSSMVLELNASDDRGIGIVRGQILSFASTRTIFKAG 522
TP Q S V EL+A+ + +R + R ++G
Sbjct: 64 NCLTPTEDFEACGTCESCVSFQNQGSMNVYELDAASSNSVDDIRNLV---DQVRYPPQSG 120
Query: 523 P-KLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPL 699
K+ I+DE ++N A NA + +E+ E V F + KIIP + SRC F F +
Sbjct: 121 KRKVYIIDEVHMLSNSAFNAFLKTLEEPPEYVIFILATTEKHKIIPTILSRCQIFDFKRI 180
Query: 700 KQDQIVPRLQEIVTTEGVKMSEGGMKALLTWSGGDM 807
+ + L I E ++ + + + + G +
Sbjct: 181 EVKDMSGHLANIAQKEEIEAEQDALDLIAQKADGGL 216
>UniRef50_Q7NAN5 Cluster: DnaX; n=1; Mycoplasma gallisepticum|Rep:
DnaX - Mycoplasma gallisepticum
Length = 624
Score = 66.1 bits (154), Expect = 1e-09
Identities = 56/207 (27%), Positives = 93/207 (44%), Gaps = 19/207 (9%)
Frame = +1
Query: 238 EKYRPKRLDDLVSHDDIIKTINQFMKENQLPHL-LFYGPPGTGKTST--ILA-------- 384
+KYRP L ++ I + + +QL +F G G GKTS ILA
Sbjct: 29 QKYRPTNLSSIIGQSHITNILLKASAHDQLATAYIFQGSRGIGKTSISKILAKAYNCLNK 88
Query: 385 --------CAKQMYTPQQFSSMVLELNASDDRGIGIVRGQILSFASTRTIFKAGPKLIIL 540
C+ + S + EL+A+ + G+ +R +I+ A K+ IL
Sbjct: 89 KDGDVCNQCSACELINENKSQDIYELDAATNNGVDEIR-KIID-AINYAPMNLSKKVYIL 146
Query: 541 DEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVP 720
DEA ++N A NAL + +E+ ++V F KI + SRC F F L +D +V
Sbjct: 147 DEAHMLSNGAWNALLKTLEEPPKHVVFIFATTEFHKIPLTVVSRCQSFNFKKLDKDDLVD 206
Query: 721 RLQEIVTTEGVKMSEGGMKALLTWSGG 801
L+ +V E +K+ + + + ++ G
Sbjct: 207 VLKNVVKQEKIKIEDSAIDKIADFASG 233
>UniRef50_Q022F8 Cluster: DNA polymerase III, subunits gamma and
tau; n=1; Solibacter usitatus Ellin6076|Rep: DNA
polymerase III, subunits gamma and tau - Solibacter
usitatus (strain Ellin6076)
Length = 568
Score = 65.7 bits (153), Expect = 1e-09
Identities = 56/210 (26%), Positives = 97/210 (46%), Gaps = 21/210 (10%)
Frame = +1
Query: 241 KYRPKRLDDLVSHDDIIKTINQFMKENQLPH-LLFYGPPGTGKTST--ILA--------- 384
KYRP+ D++ + + T+ + ++++ H +F G GTGKT+ ILA
Sbjct: 8 KYRPQSFADVICQEHVKTTLENAIAQHRIAHGYIFSGQRGTGKTTIARILARCLNCVQGP 67
Query: 385 -------CAKQMYTPQQFSSMVLELNASDDRGIGIVRG--QILSFASTRTIFKAGPKLII 537
CA + + V+E++A+ +RGI +R + + + R +K + I
Sbjct: 68 TATPCGVCASCKEISEGGTVDVIEIDAASNRGINEMRELRENVRYQPARDRYK----IFI 123
Query: 538 LDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIV 717
+DEA +TN+A NAL + IE+ E F + KI + SRC F F + ++V
Sbjct: 124 IDEAHQITNEAFNALLKTIEEPPEWAVFVLCTTESHKIPATIASRCQHFSFRSVDFQELV 183
Query: 718 PRLQEIVTTEGVKMSEGGMKALLTWSGGDM 807
R+ I EG++ + L G +
Sbjct: 184 DRMSWICGQEGIEADAEALAVLAAAGEGSV 213
>UniRef50_UPI0000E87FCE Cluster: DNA-directed DNA polymerase; n=1;
Methylophilales bacterium HTCC2181|Rep: DNA-directed DNA
polymerase - Methylophilales bacterium HTCC2181
Length = 544
Score = 65.3 bits (152), Expect = 2e-09
Identities = 52/209 (24%), Positives = 93/209 (44%), Gaps = 20/209 (9%)
Frame = +1
Query: 241 KYRPKRLDDLVSHDDIIKTINQFMKENQLPHL-LFYGPPGTGKTSTILACAKQMYTPQQF 417
K+RPK D L+ + ++ I + +N+L H LF G G GKT+ AK + Q
Sbjct: 9 KWRPKSFDTLIGQESAVQAIANALDQNRLHHAYLFNGTRGIGKTTIARILAKSLNCEQGI 68
Query: 418 SSM------------------VLELNASDDRGIGIVRGQILSFASTRTIFKAGP-KLIIL 540
SS ++EL+A+ + G+ I + + +G K+ I+
Sbjct: 69 SSKPCLTCSACQEIDVGRYVDLIELDAASNTGVD---NMIDLLENAQYAPSSGRFKVYII 125
Query: 541 DEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVP 720
DE ++ A NA+ + +E+ E+V+F + K+ + SRC +F + + I
Sbjct: 126 DEVHMLSKSAFNAMLKTLEEPPEHVKFILATTEPQKVPITVLSRCLQFNLKQMTTENIAS 185
Query: 721 RLQEIVTTEGVKMSEGGMKALLTWSGGDM 807
L I+T E + G ++ + + G M
Sbjct: 186 HLTSILTEEKIGSESGAIQIIAKAANGSM 214
>UniRef50_Q2GI84 Cluster: DNA polymerase III, subunits gamma and
tau; n=6; canis group|Rep: DNA polymerase III, subunits
gamma and tau - Ehrlichia chaffeensis (strain Arkansas)
Length = 505
Score = 65.3 bits (152), Expect = 2e-09
Identities = 52/200 (26%), Positives = 93/200 (46%), Gaps = 19/200 (9%)
Frame = +1
Query: 241 KYRPKRLDDLVSHDDIIKTINQFMKENQLPH-LLFYGPPGTGKTST---ILACAKQMYTP 408
KYRP DL+ + +++ ++ N++P +L G G GKT+ I C + P
Sbjct: 19 KYRPSNFKDLIGQEVLVRVLHNAFHLNKIPESILLTGISGVGKTTAARIISMCLNCISGP 78
Query: 409 --------QQFSSM-------VLELNASDDRGIGIVRGQILSFASTRTIFKAGPKLIILD 543
Q S+ V+E++A+ + I V+ ++ S + K+ I+D
Sbjct: 79 TSDPCNTCQNCISIKNFNHPDVIEIDAASNTSIEDVK--VILENSRYMPISSKFKVYIID 136
Query: 544 EADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPR 723
E ++N A NAL +++E+ V+F + + KI + SRC RF F + D++V
Sbjct: 137 EVHMLSNSAFNALLKVLEEPAPYVKFILATTEVKKIPVTIISRCQRFDFQRISTDKLVDH 196
Query: 724 LQEIVTTEGVKMSEGGMKAL 783
L+ + E V E +K +
Sbjct: 197 LKVVAKKENVSFDEESIKLI 216
>UniRef50_Q0IE22 Cluster: DNA polymerase III, subunits gamma and
tau; n=13; Cyanobacteria|Rep: DNA polymerase III,
subunits gamma and tau - Synechococcus sp. (strain
CC9311)
Length = 643
Score = 65.3 bits (152), Expect = 2e-09
Identities = 53/192 (27%), Positives = 88/192 (45%), Gaps = 21/192 (10%)
Frame = +1
Query: 241 KYRPKRLDDLVSHDDIIKTINQFMKENQL-PHLLFYGPPGTGKTSTILACAKQMY----- 402
KYRP+R D LV + I T+ + ++ P LF GP GTGKTS+ A+ +
Sbjct: 11 KYRPQRFDQLVGQEAIAATLGHALTSGRIAPAYLFSGPRGTGKTSSARILARSLNCLSHD 70
Query: 403 --TPQQFSSM-------------VLELNASDDRGIGIVRGQILSFASTRTIFKAGPKLII 537
TPQ + V+E++A+ + G+ +R L S +A K+ +
Sbjct: 71 GPTPQPCGTCELCNTIARGTALDVIEIDAASNTGVDNIRD--LIERSRFAPVQARWKVYV 128
Query: 538 LDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIV 717
+DE ++ A NAL + +E+ V F + +++P + SRC RF F + + +
Sbjct: 129 VDECHMLSTAAFNALLKTLEEPPPQVVFVLATTDPQRVLPTILSRCQRFDFRRIPLEALN 188
Query: 718 PRLQEIVTTEGV 753
L I E +
Sbjct: 189 SHLAWIAEQESI 200
>UniRef50_A6LPM5 Cluster: DNA polymerase III delta' subunit; n=1;
Clostridium beijerinckii NCIMB 8052|Rep: DNA polymerase
III delta' subunit - Clostridium beijerinckii NCIMB 8052
Length = 310
Score = 65.3 bits (152), Expect = 2e-09
Identities = 50/182 (27%), Positives = 89/182 (48%), Gaps = 4/182 (2%)
Frame = +1
Query: 268 LVSHDDIIKTINQFMKENQLPHL-LFYGPPGTGKTSTILACAKQMYTPQ---QFSSMVLE 435
++ H +II IN +++ H L G G GK+ + Q+ + + +V
Sbjct: 4 IIGHKNIIDNINNRRQKDSFSHANLIIGNDGIGKSIVAKYLSNQIIKERNGVESVDIVRY 63
Query: 436 LNASDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEKYTENV 615
S+ G+ VR I+S + + ++ K++IL + D +T AQNAL + IE+ V
Sbjct: 64 SPNSNSFGVDDVRN-IISEVNKKP-YEGDKKVLILYKCDKLTVQAQNALLKTIEEPPRGV 121
Query: 616 RFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKALLTWS 795
++ + L I+ ++SRC +R PL +++I+ L+E +SE KA L +S
Sbjct: 122 HLILLSDSLEVILDTIKSRCQIYRLTPLNKEEILSYLEEKYN----NLSEDDKKAALAYS 177
Query: 796 GG 801
G
Sbjct: 178 AG 179
>UniRef50_A1W8D6 Cluster: DNA polymerase III, subunits gamma and
tau; n=13; cellular organisms|Rep: DNA polymerase III,
subunits gamma and tau - Acidovorax sp. (strain JS42)
Length = 679
Score = 65.3 bits (152), Expect = 2e-09
Identities = 53/219 (24%), Positives = 99/219 (45%), Gaps = 24/219 (10%)
Frame = +1
Query: 223 FLRRVEKYRPKRLDDLVSHDDIIKTINQFMKENQLPHL-LFYGPPGTGKT--STILACAK 393
+L KYRPK ++V + +++ ++ + + +L H LF G G GKT S ILA +
Sbjct: 3 YLVLARKYRPKTFSEMVGQEHVVQALSNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSL 62
Query: 394 QMYTPQQFSSMVL---------------------ELNASDDRGIGIVRGQILSFASTRTI 510
P + EL+A+ +RG+ V+G +L A + +
Sbjct: 63 NCQGPDGQGGITATPCGVCPACTDIDSGRFPDYTELDAASNRGVDEVQG-LLEQAVYKPV 121
Query: 511 FKAGPKLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRF 690
+ K+ ++DE +TN A NA+ + +E+ E ++F + K+ + SRC +F
Sbjct: 122 -QGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTVLSRCLQFNL 180
Query: 691 APLKQDQIVPRLQEIVTTEGVKMSEGGMKALLTWSGGDM 807
P+ + ++ L ++ E V ++ L + G M
Sbjct: 181 RPMAPETVLEHLTRVLAAENVPAEPQALRLLARAARGSM 219
>UniRef50_Q9PCH3 Cluster: DNA polymerase III subunit; n=12;
Xanthomonadaceae|Rep: DNA polymerase III subunit -
Xylella fastidiosa
Length = 608
Score = 64.9 bits (151), Expect = 2e-09
Identities = 53/216 (24%), Positives = 101/216 (46%), Gaps = 21/216 (9%)
Frame = +1
Query: 223 FLRRVEKYRPKRLDDLVSHDDIIKTINQFMKENQLPH-LLFYGPPGTGKTSTILACAKQM 399
+L K+RPKR +LV + +++ ++ ++ +L H LF G G GKT+ AK +
Sbjct: 3 YLVLARKWRPKRFAELVGQEHVVRALSNALESGRLHHAFLFTGTRGVGKTTIARIFAKSL 62
Query: 400 YTPQQFSSM------------------VLELNASDDRGIGIVRGQI--LSFASTRTIFKA 519
Q S+ +LE++A+ + G+ VR I + +R FK
Sbjct: 63 NCEQGTSADPCGRCTACLDIDVGRYIDLLEIDAASNTGVDDVREMIENAQYMPSRGKFK- 121
Query: 520 GPKLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPL 699
+ ++DE ++ A NAL + +E+ +V+F + K+ + SRC +F L
Sbjct: 122 ---VYLIDEVHMLSKAAFNALLKTLEEPPPHVKFLLATTDPQKLPVTVLSRCLQFNLKRL 178
Query: 700 KQDQIVPRLQEIVTTEGVKMSEGGMKALLTWSGGDM 807
++QI ++ +I+T E + + + L + G +
Sbjct: 179 DEEQIQRQIAKILTAEQITADDAAIIELSKAADGSL 214
>UniRef50_Q899U1 Cluster: DNA polymerase III subunits gamma and tau;
n=12; Clostridium|Rep: DNA polymerase III subunits gamma
and tau - Clostridium tetani
Length = 552
Score = 64.9 bits (151), Expect = 2e-09
Identities = 57/208 (27%), Positives = 96/208 (46%), Gaps = 19/208 (9%)
Frame = +1
Query: 241 KYRPKRLDDLVSHDDIIKTINQFMKENQLPHL-LFYGPPGTGKTST--ILA--------- 384
++RP +D++ I T+ +K ++ H LF G GTGKTST ILA
Sbjct: 12 EWRPSTFEDVIGQKHITITLKNQIKNERIAHAYLFCGTRGTGKTSTAKILAKAVNCLDLR 71
Query: 385 ----CAKQMYTPQQFSSMVL---ELNASDDRGIGIVRGQILSFASTRTIFKAGPKLIILD 543
C + + S+M++ EL+A+ + + +R I +A K+ I+D
Sbjct: 72 DGEPCNECEICKKINSNMLIDIEELDAASNNSVDNIRSIIEEVYYPPR--EAKYKVYIMD 129
Query: 544 EADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPR 723
E ++ A NA + +E+ NV F + K+ + SRC RF F +K + I R
Sbjct: 130 EVHMLSTGAVNAFLKTLEEPPSNVIFILATTDPQKLPITILSRCQRFDFKRIKSEDIFQR 189
Query: 724 LQEIVTTEGVKMSEGGMKALLTWSGGDM 807
L+ I+T +G + ++ + S G M
Sbjct: 190 LRFIITQQGFFADDNSLRLISRISDGAM 217
>UniRef50_A1AWB5 Cluster: DNA polymerase III, subunits gamma and
tau; n=2; sulfur-oxidizing symbionts|Rep: DNA polymerase
III, subunits gamma and tau - Ruthia magnifica subsp.
Calyptogena magnifica
Length = 529
Score = 64.9 bits (151), Expect = 2e-09
Identities = 56/208 (26%), Positives = 92/208 (44%), Gaps = 19/208 (9%)
Frame = +1
Query: 241 KYRPKRLDDLVSHDDIIKTINQFMKENQLPH-LLFYGPPGTGKTSTILACAKQMYTPQQF 417
KYRP LV KT+ + N L H LF G G GKT+ AK + Q
Sbjct: 11 KYRPHSFVKLVGQTHTKKTLINALDANNLHHGFLFTGTRGVGKTTIARILAKSINCEQGI 70
Query: 418 SSM------------------VLELNASDDRGIGIVRGQILSFASTRTIFKAGPKLIILD 543
SS ++EL+A+ G+ +R IL A K K+ ++D
Sbjct: 71 SSKPCDKCATCVEIDKGQSIDLIELDAASHTGVDNMR-DILENAQYMPS-KNRYKIYLID 128
Query: 544 EADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPR 723
E ++ ++ NAL + +E+ E+V+F ++ K+ + SRC +F L D+I+ +
Sbjct: 129 EVHMLSKNSFNALLKTLEEPPEHVKFLLVTTDPQKLPVTVLSRCLQFTLQQLTHDEILEQ 188
Query: 724 LQEIVTTEGVKMSEGGMKALLTWSGGDM 807
L+ I+ E + E + + + G M
Sbjct: 189 LKFIMNAEVLSYEESALGQIADFGNGSM 216
>UniRef50_Q5UZL1 Cluster: Replication factor C small subunit; n=2;
Halobacteriaceae|Rep: Replication factor C small subunit
- Haloarcula marismortui (Halobacterium marismortui)
Length = 335
Score = 64.9 bits (151), Expect = 2e-09
Identities = 36/139 (25%), Positives = 69/139 (49%)
Frame = +1
Query: 391 KQMYTPQQFSSMVLELNASDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDA 570
K++ +F+S + + ++ +L +++ + K I+LD A+ M D
Sbjct: 79 KEVSNDPRFASFIDSKRRRESSKADLIN-HVLKESASYSPVSGSYKTILLDNAEGMREDF 137
Query: 571 QNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEG 750
Q ALRR++E+Y E +F I +IP ++SRC ++ L++IVT EG
Sbjct: 138 QQALRRVMEQYYEATQFVIATRQPSAVIPPIRSRCFPVVMREPTHEETASVLEDIVTAEG 197
Query: 751 VKMSEGGMKALLTWSGGDM 807
V + G++ + ++ GD+
Sbjct: 198 VDHDDDGIEYVAGYAEGDL 216
>UniRef50_Q975D4 Cluster: Replication factor C large subunit; n=5;
Sulfolobaceae|Rep: Replication factor C large subunit -
Sulfolobus tokodaii
Length = 440
Score = 64.9 bits (151), Expect = 2e-09
Identities = 53/196 (27%), Positives = 89/196 (45%), Gaps = 8/196 (4%)
Frame = +1
Query: 241 KYRPKRLDDLVSHDD----IIKTINQFMK-ENQLPHLLFYGPPGTGKTSTILACAKQMYT 405
KYRPK L+++ + +D +++ I ++K + +L YGPPG GKT+ A A+
Sbjct: 8 KYRPKTLNEVENEEDAKKELVEWIESWLKGKPNYKAVLLYGPPGVGKTTLAEALARD--- 64
Query: 406 PQQFSSMVLELNASDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALR 585
+ + E+NASD R + +R + T TIF KLI+LDE D + A
Sbjct: 65 ---YKLELFEMNASDSRNLNDIRTMAERASITGTIFGIKGKLILLDEVDGLNARADAGAI 121
Query: 586 RIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPR---LQEIVTTEGVK 756
I + ++ II P+L+ + LK+ P L++I E +
Sbjct: 122 DAILELINKTKYPIILTANDPWDPSLRPLRNAVKMIELKRLTKYPLKRILKKICEAEKIT 181
Query: 757 MSEGGMKALLTWSGGD 804
+ + ++ S GD
Sbjct: 182 CEDEALDFIIEQSEGD 197
>UniRef50_A2BL93 Cluster: Replication factor C large subunit; n=2;
Desulfurococcales|Rep: Replication factor C large
subunit - Hyperthermus butylicus (strain DSM 5456 / JCM
9403)
Length = 484
Score = 64.9 bits (151), Expect = 2e-09
Identities = 53/199 (26%), Positives = 98/199 (49%), Gaps = 10/199 (5%)
Frame = +1
Query: 241 KYRPKRLDDLVSHDDIIKTINQFMK---ENQLPH---LLFYGPPGTGKTSTILACAKQMY 402
KYRPKR++D+V ++ K +++ + ++P LFYGP G GKTS + A A
Sbjct: 10 KYRPKRVEDVVDQEEAKKLFLPWLRSWLQGRIPERKAALFYGPAGVGKTSLVEAAA---- 65
Query: 403 TPQQFSSMVLELNASDDRGIGIVRGQILSFASTR-TIFKAGPKLIILDEADAMTNDA-QN 576
++ ++E+NASD R + +I A+T+ ++F K+I+LDE D ++ A +
Sbjct: 66 --NEYGLELIEMNASDFRRKSDIE-RIAKIAATQFSLFGRKRKIILLDEVDGISGTADRG 122
Query: 577 ALRRIIE--KYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEG 750
L I+E T++ + + + L+ F L + +V L+ I E
Sbjct: 123 GLDAILELINITKHPIVMTANDPWDQKLKPLRDASLMVPFYRLSERYVVQVLKRICAAEN 182
Query: 751 VKMSEGGMKALLTWSGGDM 807
++ + +K + + GD+
Sbjct: 183 IECEDEALKLIAQRAEGDL 201
>UniRef50_Q9PQU7 Cluster: Conserved hypothetical ATP/GTP-binding
protein; n=1; Ureaplasma parvum|Rep: Conserved
hypothetical ATP/GTP-binding protein - Ureaplasma parvum
(Ureaplasma urealyticum biotype 1)
Length = 408
Score = 64.5 bits (150), Expect = 3e-09
Identities = 55/192 (28%), Positives = 83/192 (43%), Gaps = 3/192 (1%)
Frame = +1
Query: 250 PKRLDDLVSHD---DIIKTINQFMKENQLPHLLFYGPPGTGKTSTILACAKQMYTPQQFS 420
P +DD+V D I I + + +Q+ +L+FYGPPG GK+S A+ + P F
Sbjct: 12 PHSIDDIVGQKYLLDEIGIIRRMVNHHQVFNLIFYGPPGVGKSSLAKVLAQDLKVPFAFF 71
Query: 421 SMVLELNASDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEK 600
+ V++ QI+ A F +II+DE + D Q+ L IIE
Sbjct: 72 NPVVDSKKQ--------LMQIIEQALDLNNF-----IIIIDEIHRLNKDKQDILLPIIEA 118
Query: 601 YTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKA 780
+ N I PAL+SRC PL QI R++ ++ E V
Sbjct: 119 NKIKLFATTTENPFFVINPALRSRCQLLSLKPLTSSQISERIKTLINVEEV-FEPQAFNL 177
Query: 781 LLTWSGGDMXKV 816
L+ + GD+ V
Sbjct: 178 LINKTNGDLRAV 189
>UniRef50_Q98RG0 Cluster: DNA POLYMERASE III SUBUNIT GAMMA AND TAU;
n=1; Mycoplasma pulmonis|Rep: DNA POLYMERASE III SUBUNIT
GAMMA AND TAU - Mycoplasma pulmonis
Length = 836
Score = 64.5 bits (150), Expect = 3e-09
Identities = 54/202 (26%), Positives = 89/202 (44%), Gaps = 16/202 (7%)
Frame = +1
Query: 244 YRPKRLDDLVSHDDIIKTINQFMKENQLPH-LLFYGPPGTGKTS------TILACAKQM- 399
YRP D++ D I+ T+ + N++ H LF GP GTGKTS T L C +
Sbjct: 31 YRPTTFDEVNGQDHIVATLKNIILTNKISHGYLFNGPRGTGKTSVAKIFATALNCIHKND 90
Query: 400 -YTPQQF-------SSMVLELNASDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADA 555
+ P Q + ++E++A+ + + VR L+ K ++ I+DE
Sbjct: 91 DFNPCQICIENSNKNIDIIEMDAASNNSVDDVRR--LNEELKSLPLKGEYRIYIIDEVHM 148
Query: 556 MTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEI 735
T A NAL + +E+ ++V F KI + SR RF F + D I+ L I
Sbjct: 149 FTKSAFNALLKSLEEPPKHVIFIFATTESHKIPNTILSRVQRFNFRRISNDVIIGHLANI 208
Query: 736 VTTEGVKMSEGGMKALLTWSGG 801
+ E + + + + + G
Sbjct: 209 LEKEKINYEPKSLVYIASLASG 230
>UniRef50_O25419 Cluster: DNA polymerase III gamma and tau subunits;
n=4; Helicobacter|Rep: DNA polymerase III gamma and tau
subunits - Helicobacter pylori (Campylobacter pylori)
Length = 578
Score = 64.5 bits (150), Expect = 3e-09
Identities = 54/201 (26%), Positives = 93/201 (46%), Gaps = 20/201 (9%)
Frame = +1
Query: 241 KYRPKRLDDLVSHDDIIKTINQFMKENQLPHL-LFYGPPGTGKTSTILACAKQMYTPQ-- 411
KYRPK +LV + + KT++ + +L + LF G G+GKTS+ A+ + +
Sbjct: 7 KYRPKHFSELVGQESVAKTLSLALDNQRLANAYLFSGLRGSGKTSSSRIFARALMCEEGP 66
Query: 412 ---------QFSSM-------VLELNASDDRGIGIVRGQILSFASTRTIFKAGP-KLIIL 540
Q S ++E++ + +RGI VR I TR G K+ I+
Sbjct: 67 KAVPCDTCIQCQSALNNHHIDIIEMDGASNRGIDDVRNLI---EQTRYKPSFGRYKIFII 123
Query: 541 DEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVP 720
DE T +A NAL + +E+ +V+F + K+ + SR FRF + ++ ++
Sbjct: 124 DEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDALKLPATILSRTQHFRFKKIPENSVIS 183
Query: 721 RLQEIVTTEGVKMSEGGMKAL 783
L+ I+ E V ++ L
Sbjct: 184 HLKTILEKEQVSYETSALEKL 204
>UniRef50_A0CIK7 Cluster: Chromosome undetermined scaffold_19, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_19,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 356
Score = 64.5 bits (150), Expect = 3e-09
Identities = 33/94 (35%), Positives = 52/94 (55%)
Frame = +1
Query: 526 KLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQ 705
K++I++E D +T +AQ +LRR +EKY E R +IC L KII ++SRC R Q
Sbjct: 134 KVVIINEVDNLTKEAQASLRRTMEKYIERCRIILICESLAKIINPIRSRCLLIRVPAPDQ 193
Query: 706 DQIVPRLQEIVTTEGVKMSEGGMKALLTWSGGDM 807
Q+ L +I K+S+ + + S G++
Sbjct: 194 TQVAQILDKISAQYNCKISQQLINKIAIASNGNL 227
Score = 56.8 bits (131), Expect = 6e-07
Identities = 24/55 (43%), Positives = 34/55 (61%)
Frame = +1
Query: 238 EKYRPKRLDDLVSHDDIIKTINQFMKENQLPHLLFYGPPGTGKTSTILACAKQMY 402
E +PK LD L H +I + + + K + PHLLFYGP G GK + +LA K++Y
Sbjct: 8 ESTKPKSLDSLDYHSEISEILRKLAKNSDFPHLLFYGPNGAGKKTRVLAFLKEVY 62
>UniRef50_O83970 Cluster: DNA polymerase III, subunits gamma and
tau; n=1; Treponema pallidum|Rep: DNA polymerase III,
subunits gamma and tau - Treponema pallidum
Length = 572
Score = 64.1 bits (149), Expect = 4e-09
Identities = 54/210 (25%), Positives = 96/210 (45%), Gaps = 21/210 (10%)
Frame = +1
Query: 241 KYRPKRLDDLVSHDDIIKTINQFMKENQL-PHLLFYGPPGTGKTSTILACAKQMYTPQQF 417
+YRP+R ++ ++ T+ + ++EN++ P LF GP G GKTS AK + Q+
Sbjct: 9 RYRPQRFQHVLGQKFVVATLQKSLEENKVSPAYLFSGPHGCGKTSCARILAKALNCVQRE 68
Query: 418 SSM------------------VLELNASDDRGIGIVRG--QILSFASTRTIFKAGPKLII 537
+S V+E++ + G+G VR + + F T +K + I
Sbjct: 69 ASEPCGECPSCREIATGTNLNVIEIDGASHTGVGDVRQIKEEILFPPHGTRYK----VFI 124
Query: 538 LDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIV 717
+DE ++N A NAL + IE+ V F + +I ++SRC +F F + +V
Sbjct: 125 IDEVHMLSNSAFNALLKTIEEPPPYVVFIFATTEVHRIPATVKSRCQQFHFRLVDTQTLV 184
Query: 718 PRLQEIVTTEGVKMSEGGMKALLTWSGGDM 807
L + + + +G + + S G M
Sbjct: 185 CALAQAAQQMQIAVEDGVLSWIARESAGSM 214
>UniRef50_A3EPW1 Cluster: Putative DNA polymerase III, gamma/tau
subunits; n=1; Leptospirillum sp. Group II UBA|Rep:
Putative DNA polymerase III, gamma/tau subunits -
Leptospirillum sp. Group II UBA
Length = 540
Score = 64.1 bits (149), Expect = 4e-09
Identities = 56/213 (26%), Positives = 92/213 (43%), Gaps = 19/213 (8%)
Frame = +1
Query: 226 LRRVEKYRPKRLDDLVSHDDIIKTINQFMKENQLPH-LLFYGPPGTGKTST--ILA---- 384
L K+RP+ DLV + +++ + + +LP LLF G G GKT+ ILA
Sbjct: 5 LSLARKWRPQLFSDLVGQEFVVRALTGTLGSGKLPQALLFSGDRGVGKTTVARILAKAIN 64
Query: 385 ------------CAKQMYTPQQFSSMVLELNASDDRGIGIVRGQILSFASTRTIFKAGPK 528
C + + S VLE++ + G+ +R L F++ +
Sbjct: 65 CEKGPTVDPCQECDSCLEITRGTSPDVLEIDGASHTGVEDIRS--LREGIRYLPFRSRSR 122
Query: 529 LIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQD 708
+ I+DE ++ A NAL + +E+ +V F KI + SRC FRF L
Sbjct: 123 VYIIDEVHMLSQAAFNALLKTLEEPPPHVVFIFATTEDHKIPDTILSRCQHFRFRSLGVP 182
Query: 709 QIVPRLQEIVTTEGVKMSEGGMKALLTWSGGDM 807
+I +L+ IV E + + + SGG +
Sbjct: 183 EITAKLENIVRQESLSFPRAILNLIARASGGSL 215
>UniRef50_A0L8F3 Cluster: DNA polymerase III, subunits gamma and
tau; n=1; Magnetococcus sp. MC-1|Rep: DNA polymerase
III, subunits gamma and tau - Magnetococcus sp. (strain
MC-1)
Length = 605
Score = 64.1 bits (149), Expect = 4e-09
Identities = 49/200 (24%), Positives = 94/200 (47%), Gaps = 19/200 (9%)
Frame = +1
Query: 241 KYRPKRLDDLVSHDDIIKTINQFMKENQLPH-LLFYGPPGTGKT--STILACAKQMYTPQ 411
K+RP+R +DL+ + ++ + +++ ++PH LF G G GKT S +LA T
Sbjct: 13 KWRPRRFEDLIGQEHTVQALRHALEQGRIPHAFLFTGIRGIGKTTLSRLLAMCLNCGTGV 72
Query: 412 QFSSM----------------VLELNASDDRGIGIVRGQILSFASTRTIFKAGPKLIILD 543
+ V E++A+ + +R + A T ++ + K+ ILD
Sbjct: 73 TANPCGACDSCRAIVRGEHPDVFEVDAASRTKVEQMRELLDGVAYTPSLSRY--KIYILD 130
Query: 544 EADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPR 723
E ++ + NAL + +E+ +V+F + KI+P + SRC R+ L +D +
Sbjct: 131 EVHMLSASSFNALLKTLEEPPTHVKFIFATTEVRKILPTILSRCQRYDLRRLDRDGLARY 190
Query: 724 LQEIVTTEGVKMSEGGMKAL 783
L ++ E + + G+ A+
Sbjct: 191 LAHVLDVEQIAYDQEGLAAI 210
>UniRef50_O94697 Cluster: Replication factor C subunit 5; n=2;
Ascomycota|Rep: Replication factor C subunit 5 -
Schizosaccharomyces pombe (Fission yeast)
Length = 358
Score = 64.1 bits (149), Expect = 4e-09
Identities = 29/77 (37%), Positives = 50/77 (64%)
Frame = +1
Query: 526 KLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQ 705
K+++++ AD +T DAQ ALRR +EKY+ N+R +I N KII ++SR R A
Sbjct: 129 KVVVINVADELTRDAQAALRRTMEKYSNNIRLILIANSTSKIIEPIRSRTLMVRVAAPTP 188
Query: 706 DQIVPRLQEIVTTEGVK 756
++I+ + +I+T +G++
Sbjct: 189 EEIILVMSKILTAQGLE 205
Score = 52.8 bits (121), Expect = 1e-05
Identities = 21/58 (36%), Positives = 34/58 (58%)
Frame = +1
Query: 235 VEKYRPKRLDDLVSHDDIIKTINQFMKENQLPHLLFYGPPGTGKTSTILACAKQMYTP 408
+++YRPK L L H + + + N+ PHLL YGP G GK + ++A +++Y P
Sbjct: 4 LDQYRPKTLASLDYHKQLSERLISLSSTNEFPHLLVYGPSGAGKKTRVVAILRELYGP 61
>UniRef50_Q5P9F0 Cluster: DNA polymerase III gamma subunit; n=2;
Anaplasma|Rep: DNA polymerase III gamma subunit -
Anaplasma marginale (strain St. Maries)
Length = 474
Score = 63.7 bits (148), Expect = 5e-09
Identities = 56/209 (26%), Positives = 93/209 (44%), Gaps = 20/209 (9%)
Frame = +1
Query: 241 KYRPKRLDDLVSHDDIIKTI-NQFMKENQLPHLLFYGPPGTGKT------STILACAKQM 399
KYRP+ DDLV D +++ + N F + +L G G GKT S L C
Sbjct: 6 KYRPRSFDDLVGQDVLVRILRNAFTIGSLSSPILMVGASGVGKTTCARIVSLCLNCVNGP 65
Query: 400 YTPQQFSSM-------------VLELNASDDRGIGIVRGQILSFASTRTIFKAGPKLIIL 540
TP + V+E++A+ + G+ +R +L S+ + K+ I+
Sbjct: 66 -TPDPCGTCHECVSIKNSTNPDVIEMDAASNTGVDDIR--VLLENSSYLPTSSRYKVYII 122
Query: 541 DEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVP 720
DE ++ A NAL + +E E+VRF + + K+ + SRC R L DQ+
Sbjct: 123 DEVHMLSISAFNALLKTLEDPAEHVRFVMATTEVRKVPVTVASRCHRLDLFKLTTDQLFA 182
Query: 721 RLQEIVTTEGVKMSEGGMKALLTWSGGDM 807
L EI E ++ G++ + + G +
Sbjct: 183 HLVEIAKKEDIEHDGDGLRLIAENASGSV 211
>UniRef50_Q1GKB7 Cluster: DNA polymerase III subunits gamma and tau;
n=27; Bacteria|Rep: DNA polymerase III subunits gamma
and tau - Silicibacter sp. (strain TM1040)
Length = 608
Score = 63.7 bits (148), Expect = 5e-09
Identities = 55/207 (26%), Positives = 99/207 (47%), Gaps = 24/207 (11%)
Frame = +1
Query: 241 KYRPKRLDDLVSHDDIIKTI-NQFMKENQLPHLLFYGPPGTGKTST--ILA--------- 384
KYRP+ DLV D +++T+ N F + + G GTGKT+T I+A
Sbjct: 23 KYRPETFADLVGQDAMVRTLKNAFAADRIAQAFIMTGIRGTGKTTTARIIAKGMNCIGED 82
Query: 385 ---------CAKQMYTPQQFSSM---VLELNASDDRGIGIVRGQILSFASTRTIFKAGPK 528
C K + V+E++A+ G+G +R +I+ + R A K
Sbjct: 83 GQGGPTTEPCGKCEHCTAIMEGRHVDVMEMDAASRTGVGDIR-EIIDSVAYRAA-SARYK 140
Query: 529 LIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQD 708
+ I+DE ++ A NAL + +E+ +V+F + K+ + SRC RF ++ +
Sbjct: 141 IYIIDEVHMLSTSAFNALLKTLEEPPAHVKFIFATTEIRKVPVTVLSRCQRFDLRRIEPE 200
Query: 709 QIVPRLQEIVTTEGVKMSEGGMKALLT 789
++ L+ I T+E ++++ + AL+T
Sbjct: 201 VMIDLLRRIATSEQAEIADDAL-ALIT 226
>UniRef50_A6W567 Cluster: DNA polymerase III, subunits gamma and
tau; n=1; Kineococcus radiotolerans SRS30216|Rep: DNA
polymerase III, subunits gamma and tau - Kineococcus
radiotolerans SRS30216
Length = 712
Score = 63.7 bits (148), Expect = 5e-09
Identities = 56/213 (26%), Positives = 100/213 (46%), Gaps = 24/213 (11%)
Frame = +1
Query: 241 KYRPKRLDDLVSHDDIIKTINQFMKENQLPHL-LFYGPPGTGKTST--ILA----CAKQM 399
+YRP+ + ++ + + + Q + + ++ H LF GP G GKT++ ILA CA Q
Sbjct: 8 RYRPETFEQVIGQEHVTAPLMQALSKGRVTHAYLFSGPRGCGKTTSARILARCLNCA-QG 66
Query: 400 YTPQQFSSM---------------VLELNASDDRGIGIVRG--QILSFASTRTIFKAGPK 528
TP V+E++A+ G+ R + +SFA R FK
Sbjct: 67 PTPTPCGECDSCVDLANGGPGSIDVVEIDAASHNGVDDARDLRERVSFAPARDRFK---- 122
Query: 529 LIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQD 708
+ ILDEA ++ NAL + +E+ +V+F K++ ++SR + F +
Sbjct: 123 VYILDEAHMVSPQGFNALLKTVEEPPPHVKFVFATTEPDKVLTTIRSRTHHYPFRLVPPG 182
Query: 709 QIVPRLQEIVTTEGVKMSEGGMKALLTWSGGDM 807
Q+ L E+ EGV++ +G + ++ GG +
Sbjct: 183 QLTAYLAELAEREGVRIGKGVLPLVVRAGGGSV 215
>UniRef50_A3JQW8 Cluster: DNA polymerase III subunits gamma and tau;
n=1; Rhodobacterales bacterium HTCC2150|Rep: DNA
polymerase III subunits gamma and tau - Rhodobacterales
bacterium HTCC2150
Length = 596
Score = 63.7 bits (148), Expect = 5e-09
Identities = 55/207 (26%), Positives = 97/207 (46%), Gaps = 24/207 (11%)
Frame = +1
Query: 241 KYRPKRLDDLVSHDDIIKTI-NQFMKENQLPHLLFYGPPGTGKTST--ILA--------- 384
KYRP+ DLV D +++T+ N F + + G GTGKTST I+A
Sbjct: 15 KYRPETFADLVGQDAMVRTLKNAFAADRIAQAFVLTGIRGTGKTSTARIIAKGLNCIGPD 74
Query: 385 ------------CAKQMYTPQQFSSMVLELNASDDRGIGIVRGQILSFASTRTIFKAGPK 528
C + + ++E++A+ G+G +R +I+ R A K
Sbjct: 75 GNGGPTTEPCGQCEHCVAISEGRHVDIMEMDAASRTGVGDIR-EIIESVHYRAA-SARYK 132
Query: 529 LIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQD 708
+ I+DE ++N A NAL + +E+ E+V+F + K+ + SRC RF ++ +
Sbjct: 133 IYIIDEVHMLSNSAFNALLKTLEEPPEHVKFVFATTEIRKVPVTVLSRCQRFDLRRIEPE 192
Query: 709 QIVPRLQEIVTTEGVKMSEGGMKALLT 789
++ LQ +E +++ + AL+T
Sbjct: 193 VMIKMLQGNAASENANITDDAL-ALIT 218
>UniRef50_A0GXK7 Cluster: DNA polymerase III, subunits gamma and
tau; n=2; Chloroflexus|Rep: DNA polymerase III, subunits
gamma and tau - Chloroflexus aggregans DSM 9485
Length = 613
Score = 63.7 bits (148), Expect = 5e-09
Identities = 51/207 (24%), Positives = 93/207 (44%), Gaps = 18/207 (8%)
Frame = +1
Query: 241 KYRPKRLDDLVSHDDIIKTINQFMKENQLPHL-LFYGPPGTGKTSTILACAKQMYT---- 405
K+R + +LV + +++T+ + E+++ H LF GP G GKT+ AK +
Sbjct: 9 KWRSQTFAELVGQEHVVQTLRNAIAEDRVGHAYLFTGPRGVGKTTMARLLAKAVNCLHPD 68
Query: 406 PQQFSSMVLELNAS--DDRGIGIVRGQILSFAST--------RTIFK---AGPKLIILDE 546
P E+ + + R + ++ S S R F+ A K+ I+DE
Sbjct: 69 PSARPCGTCEMCTAIAEGRAVDVIEMDAASHTSVEDAREIIERVQFRPSVARMKVYIIDE 128
Query: 547 ADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRL 726
A ++ A NAL + +E+ ++ F + + K+ + SRC RF F + +
Sbjct: 129 AHMLSTAAFNALLKTLEEPPDHALFILATTEVHKVPATILSRCQRFTFVRHSVTSMAAHV 188
Query: 727 QEIVTTEGVKMSEGGMKALLTWSGGDM 807
+ I EG+ + EG +A+ + G M
Sbjct: 189 RRIAAAEGIVLVEGAPEAIARAATGSM 215
>UniRef50_UPI000049936A Cluster: Activator 1 140 kDa subunit; n=1;
Entamoeba histolytica HM-1:IMSS|Rep: Activator 1 140 kDa
subunit - Entamoeba histolytica HM-1:IMSS
Length = 718
Score = 63.3 bits (147), Expect = 7e-09
Identities = 54/202 (26%), Positives = 91/202 (45%), Gaps = 12/202 (5%)
Frame = +1
Query: 238 EKYRPKRLDDLVSHDDIIKTINQFMK--ENQLPH---LLFYGPPGTGKTSTILACAKQM- 399
EKYRP+ DL+ + + I ++ E +P +L G PG GKT+ K +
Sbjct: 248 EKYRPQTKSDLIGNKNQIAKFYTWINKWEKVIPDRRAVLLAGAPGVGKTTVSKIVGKTLG 307
Query: 400 YTPQQFSSMVLELNASDDRGIGIVRGQILSFASTRTIFKAGPK----LIILDEADAMTND 567
+ P +E NASD R + I I G K LII+DE D M++
Sbjct: 308 FNP-------IEFNASDTRNKSSIELAIKRIFLNGQISIDGSKNKKPLIIMDEVDGMSSG 360
Query: 568 AQNALRRIIE--KYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVT 741
+ + +++ K TE CI + + K + L + C F+ + ++ RL+ I
Sbjct: 361 DRGGITELVKYIKETEQPIVCICNDIMDKKMQPLINVCETINFSKISVSELTERLKYICD 420
Query: 742 TEGVKMSEGGMKALLTWSGGDM 807
EGV +S+ + + + + GD+
Sbjct: 421 KEGVHVSDENLNQIASKAHGDV 442
>UniRef50_Q6MDZ7 Cluster: Probable DNA-directed DNA polymerase III
subunits gamma/tau dnaX; n=1; Candidatus Protochlamydia
amoebophila UWE25|Rep: Probable DNA-directed DNA
polymerase III subunits gamma/tau dnaX - Protochlamydia
amoebophila (strain UWE25)
Length = 522
Score = 63.3 bits (147), Expect = 7e-09
Identities = 53/203 (26%), Positives = 97/203 (47%), Gaps = 22/203 (10%)
Frame = +1
Query: 241 KYRPKRLDDLVSHDDIIKTINQFMKENQLPHL-LFYGPPGTGKTSTILACAKQMY---TP 408
K+RP+ ++ + ++ T+ +K +L LF G GTGKT+ AK + +
Sbjct: 10 KFRPQTFKEVFGQEAVVTTLKNAIKFKRLAQAYLFCGSRGTGKTTLARIFAKAINCQNST 69
Query: 409 QQF---------------SSM-VLELNASDDRGIGIVR--GQILSFASTRTIFKAGPKLI 534
+ F SS+ VLE++ + RGI +R + + +A+T +K +
Sbjct: 70 EDFEPCNQCTSCREITSGSSLDVLEIDGASHRGIEDIRQINETVGYAATSGQYK----VY 125
Query: 535 ILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQI 714
I+DE +T +A NAL + +E+ V+F K++P + SRC RF + + QI
Sbjct: 126 IIDEVHMLTKEAFNALLKTLEEPPPKVKFIFATTEAHKVLPTILSRCQRFNLSRIPLSQI 185
Query: 715 VPRLQEIVTTEGVKMSEGGMKAL 783
+ +L+ I + + E ++ L
Sbjct: 186 MIKLKLIADQLEIDVEEEALQLL 208
>UniRef50_Q117S8 Cluster: DNA polymerase III, subunits gamma and
tau; n=1; Trichodesmium erythraeum IMS101|Rep: DNA
polymerase III, subunits gamma and tau - Trichodesmium
erythraeum (strain IMS101)
Length = 695
Score = 63.3 bits (147), Expect = 7e-09
Identities = 55/211 (26%), Positives = 101/211 (47%), Gaps = 32/211 (15%)
Frame = +1
Query: 241 KYRPKRLDDLVSHDDIIKTINQFMKENQL-PHLLFYGPPGTGKTSTILACAKQMY----- 402
KYRP+ DLV D I +T+ + ++ P LF GP GTGKTS+ AK +
Sbjct: 9 KYRPQTFADLVGQDVIAQTLTNAIHTKRIAPAYLFTGPRGTGKTSSARVLAKSLNCLSYD 68
Query: 403 --TPQQFSSM-------------VLELNASDDRGIGIVRGQILSFASTRTIFKAGPKLII 537
TP + V+E++A+ + G+ +R +++ + + + K+ +
Sbjct: 69 HPTPSPCGTCNVCVGITKGSTLDVIEIDAASNTGVDNIR-ELIERSQFAPV-QCRYKVYV 126
Query: 538 LDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIV 717
+DE ++ A NAL + +E+ + V F + +++ + SRC RF F + + +V
Sbjct: 127 IDEVHMLSVSAFNALLKTLEEPPKGVVFILATTDPQRVLATIISRCQRFDFRRIPLEAMV 186
Query: 718 PRLQEI-------VTTEGVKM----SEGGMK 777
L I +TTE ++M ++GG++
Sbjct: 187 KHLHHIAIEEKIDITTEAIQMIAQIAQGGLR 217
>UniRef50_A5UTH5 Cluster: DNA polymerase III, subunits gamma and
tau; n=2; Roseiflexus|Rep: DNA polymerase III, subunits
gamma and tau - Roseiflexus sp. RS-1
Length = 599
Score = 63.3 bits (147), Expect = 7e-09
Identities = 52/206 (25%), Positives = 90/206 (43%), Gaps = 17/206 (8%)
Frame = +1
Query: 241 KYRPKRLDDLVSHDDIIKTINQFMKENQLPHL-LFYGPPGTGKTSTILACAKQMYT---P 408
+YR + D+L+ + +++T+ + E ++ H LF GP G GKT+ AK + P
Sbjct: 9 RYRSQTFDELIGQEHVVRTLRNAIAEGRVAHAYLFTGPRGVGKTTVARLLAKAVNCTAPP 68
Query: 409 QQFSSMVLEL--NASDDRGIGIVRGQILSFAST--------RTIFK---AGPKLIILDEA 549
+ V E ++ + ++ S S R F+ A K+ I+DE
Sbjct: 69 AERPCGVCESCRAIAEGHAVDVIEMDAASHTSVEDAREIIERVQFRPAVARTKVYIIDEV 128
Query: 550 DAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQ 729
++ A NAL + +E+ + F + + K+ + SRC RF F I L+
Sbjct: 129 HMLSTAAFNALLKTLEEPPPHALFILATTEVHKVPATILSRCQRFVFNRHTVASIAAHLR 188
Query: 730 EIVTTEGVKMSEGGMKALLTWSGGDM 807
I EGV + G +A+ + G M
Sbjct: 189 SIAAQEGVTLEAGVAEAIARAATGSM 214
>UniRef50_Q7WMF3 Cluster: DNA polymerase III subunit Tau; n=4;
Bordetella|Rep: DNA polymerase III subunit Tau -
Bordetella bronchiseptica (Alcaligenes bronchisepticus)
Length = 743
Score = 62.9 bits (146), Expect = 9e-09
Identities = 57/225 (25%), Positives = 100/225 (44%), Gaps = 22/225 (9%)
Frame = +1
Query: 199 FNTTIKTLFLRRVEKYRPKRLDDLVSHDDIIKTINQFMKENQLPHL-LFYGPPGTGKTST 375
+N + L L R K+RP+ D L+ D +++ + + +L H LF G G GKT+
Sbjct: 42 YNPPMTYLVLAR--KWRPRSFDTLIGQDHVVRALTHALDTQRLHHAWLFTGTRGVGKTTL 99
Query: 376 ILACAKQMYTPQQFSSM------------------VLELNASDDRGIGIVRGQILSFAST 501
AK + +S LEL+A+ +RG+ + Q+L A
Sbjct: 100 SRILAKSLNCENGITSKPCGQCRACTEIDAGRFVDYLELDAASNRGVEEMT-QLLEQA-- 156
Query: 502 RTIFKAGP---KLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSR 672
++ G K+ ++DE +T A NA+ + +E+ +V+F + KI + SR
Sbjct: 157 --VYAPGAGRFKVYMIDEVHMLTGHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSR 214
Query: 673 CTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKALLTWSGGDM 807
C +F + D IV LQ ++ E + ++ + +GG M
Sbjct: 215 CLQFNLKQMPPDAIVGHLQAVLGEEQIGFEVPALRLIGQAAGGSM 259
>UniRef50_Q6ABA1 Cluster: DNA polymerase III subunit gamma; n=2;
cellular organisms|Rep: DNA polymerase III subunit gamma
- Propionibacterium acnes
Length = 957
Score = 62.9 bits (146), Expect = 9e-09
Identities = 55/212 (25%), Positives = 100/212 (47%), Gaps = 23/212 (10%)
Frame = +1
Query: 241 KYRPKRLDDLVSHDDIIKTINQFMKENQLPHL-LFYGPPGTGKTST--ILACA---KQMY 402
+YRP+ D+++ D +I+ + + + N++ H LF GP G GKT+T ILA A +Q
Sbjct: 113 RYRPETFDEVIGEDHVIEPLKRAILNNRVNHAYLFSGPRGCGKTTTARILARALNCEQGP 172
Query: 403 TPQQFSSM---------------VLELNASDDRGIGIVRG--QILSFASTRTIFKAGPKL 531
TP + V+E++A+ G+ R + FA + +K +
Sbjct: 173 TPTPCGTCQSCRDLACGGPGSIDVIEIDAASHGGVDDARDLRERAFFAPVHSRYK----I 228
Query: 532 IILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQ 711
I+DEA +T NAL +++E+ +V+F K+I ++SR + F +
Sbjct: 229 YIIDEAHMVTPQGFNALLKLVEEPPPHVKFIFATTEPEKVIGTIRSRTHHYPFRLVPPKV 288
Query: 712 IVPRLQEIVTTEGVKMSEGGMKALLTWSGGDM 807
+V L E+ EG+ + + ++ GG +
Sbjct: 289 LVEYLAELCGKEGIDVDHAVLPLVVRAGGGSV 320
>UniRef50_Q9AIX4 Cluster: DNA polymerase III-like protein; n=2;
Western X phytoplasma|Rep: DNA polymerase III-like
protein - Western X phytoplasma
Length = 202
Score = 62.9 bits (146), Expect = 9e-09
Identities = 55/200 (27%), Positives = 96/200 (48%), Gaps = 19/200 (9%)
Frame = +1
Query: 223 FLRRVEKYRPKRLDDLVSHDDIIKTINQFMKENQLPHL-LFYGPPGTGKTST--ILACAK 393
+L K+RPK D +V + +IKT+ +K ++ H L G G GKT+ ILA A
Sbjct: 3 YLVLYRKHRPKNFDGMVGQEVVIKTLKNAIKLQKIHHCYLLSGNKGVGKTTLAKILAKAI 62
Query: 394 QMYTPQ---------------QFSSM-VLELNASDDRGIGIVRGQILSFASTRTIFKAGP 525
PQ Q +++ V+E++ + G+ +R + + K
Sbjct: 63 NCQNPQGQDCCNECEFCLVVHQKANLDVIEIDGASYNGVDEIRELKDTVQYKPHLLKY-- 120
Query: 526 KLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQ 705
K+ I+DE ++++A NAL +++E+ NV F +I + L KI + SR F L
Sbjct: 121 KVYIIDEVHVLSSNAFNALLKLLEEPPLNVVFILITSELAKIPKTILSRTQHFHLPNLTD 180
Query: 706 DQIVPRLQEIVTTEGVKMSE 765
++I +L IV E + +++
Sbjct: 181 EEIKTKLNPIVEEEKILITD 200
>UniRef50_Q18C99 Cluster: DNA polymerase III subunit gamma/tau; n=2;
Clostridium difficile|Rep: DNA polymerase III subunit
gamma/tau - Clostridium difficile (strain 630)
Length = 545
Score = 62.9 bits (146), Expect = 9e-09
Identities = 55/203 (27%), Positives = 88/203 (43%), Gaps = 17/203 (8%)
Frame = +1
Query: 244 YRPKRLDDLVSHDDIIKTI-NQFMKENQLPHLLFYGPPGTGKTST------ILACAKQMY 402
YRP++ +D++ D IIKT+ NQ +N LF G GTGKTST + C ++
Sbjct: 9 YRPQKFEDVIGQDHIIKTLKNQIYSDNIGHAYLFCGTRGTGKTSTAKIFSRAVNCLNKIN 68
Query: 403 TPQ----QFSSMVLELNASDDRGIGIV-RGQILSFASTRTIFKAGP-----KLIILDEAD 552
+ VL+ N D I + R K P K+ I+DE
Sbjct: 69 EEPCNECEICESVLKDNTMDVVEIDAASNNSVDDIRELRESVKYSPANAKYKVYIIDEVH 128
Query: 553 AMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQE 732
++ A NAL + +E+ V F + KI + SRC R+ F + + R+++
Sbjct: 129 MLSQGAFNALLKTLEEPPSYVIFILATTEPHKIPATILSRCQRYDFKRVTVKDMTLRMKK 188
Query: 733 IVTTEGVKMSEGGMKALLTWSGG 801
I EG+ + + + + S G
Sbjct: 189 ICEDEGIDIDDKALNLIARNSQG 211
>UniRef50_Q4MZF5 Cluster: Replication factor C large subunit,
putative; n=1; Theileria parva|Rep: Replication factor C
large subunit, putative - Theileria parva
Length = 1084
Score = 62.9 bits (146), Expect = 9e-09
Identities = 63/224 (28%), Positives = 99/224 (44%), Gaps = 34/224 (15%)
Frame = +1
Query: 238 EKYRPKRLDDLVSHDDIIKTINQFMK-------ENQLPHLLFYGPPGTGKTSTILACAKQ 396
EKYRPKR +L+ + I+ + +++ +++ L GPPG GKT+ CAK
Sbjct: 504 EKYRPKRFSELIGNPRSIQRLKDWLQHFPKDKGKDEFKAALLSGPPGIGKTT----CAK- 558
Query: 397 MYTPQQFSSMVLELNASDDRG-------IGIVRGQI-------LSFASTRTIFK------ 516
Q F+ V+ELNASD R +V G + S + T FK
Sbjct: 559 -LVGQFFNYHVIELNASDQRSKNSIENIFPLVTGTLTLNTIYSASSITNNTSFKNKNNNS 617
Query: 517 -----AGPKLIILDEADAMTNDAQNALRRIIEKY-TENVRFCIICN-YLGKIIPALQSRC 675
L+ILDE D M++ + ++ I E +ICN + + L ++C
Sbjct: 618 NVNGLNAKTLLILDEVDGMSSGDKGGIQAISELIDITKCPIILICNDRFSQKMSTLSNKC 677
Query: 676 TRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKALLTWSGGDM 807
RF P D + R+ +I E +K++E + L S GD+
Sbjct: 678 LDLRFNPPPIDLYINRINKICKLENIKVTENLLLELYHKSSGDL 721
>UniRef50_Q5FTB4 Cluster: DNA polymerase III subunit gamma/tau; n=6;
Rhodospirillales|Rep: DNA polymerase III subunit
gamma/tau - Gluconobacter oxydans (Gluconobacter
suboxydans)
Length = 652
Score = 62.5 bits (145), Expect = 1e-08
Identities = 54/213 (25%), Positives = 92/213 (43%), Gaps = 24/213 (11%)
Frame = +1
Query: 241 KYRPKRLDDLVSHDDIIKTINQFMKENQLPH-LLFYGPPGTGKTST--ILACAKQMYTPQ 411
KYRP+ DDL+ D +++ + + + ++ H + G G GKT+T I+A A P
Sbjct: 44 KYRPQTFDDLIGQDSLVRILRRAFELKRVAHAFMLTGVRGVGKTTTARIIARALNCVGPD 103
Query: 412 QFSSM---------------------VLELNASDDRGIGIVRGQILSFASTRTIFKAGPK 528
VLE++A+ G+ VR +I+ R + +A K
Sbjct: 104 GKGGPTADPCGVCPNCTAILADRHPDVLEMDAASRTGVDDVR-EIIEATRFRPM-QARMK 161
Query: 529 LIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQD 708
+ I+DE ++ +A NAL + +E+ V F L K+ + SRC RF + Q
Sbjct: 162 VFIIDEVHMLSRNAFNALLKTLEEPPPQVTFIFATTELRKVPVTVLSRCQRFDLRRVPQS 221
Query: 709 QIVPRLQEIVTTEGVKMSEGGMKALLTWSGGDM 807
+ I EG +SE + + + G +
Sbjct: 222 LLAGHFHNIAVKEGATLSEDALALIARAADGSV 254
>UniRef50_O84338 Cluster: DNA Pol III Gamma and Tau; n=8;
Chlamydiaceae|Rep: DNA Pol III Gamma and Tau - Chlamydia
trachomatis
Length = 466
Score = 62.5 bits (145), Expect = 1e-08
Identities = 49/211 (23%), Positives = 98/211 (46%), Gaps = 22/211 (10%)
Frame = +1
Query: 241 KYRPKRLDDLVSHDDIIKTINQFMKENQLPHL-LFYGPPGTGKTSTILACAKQM--YTPQ 411
+YRP +++ D ++ + ++ N+ H +F G GTGKT+ AK + P
Sbjct: 10 RYRPNNFSEILGQDIVVSILKNSLRLNRAAHAYIFSGIRGTGKTTLARVFAKALNCQNPT 69
Query: 412 QF----------------SSM-VLELNASDDRGIGIVR--GQILSFASTRTIFKAGPKLI 534
Q +SM V+E++ + RGI +R + + F +++ +K +
Sbjct: 70 QDQEPCNQCAICKEISLGTSMDVIEIDGASHRGIEDIRQINETVLFVPSKSRYK----IY 125
Query: 535 ILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQI 714
I+DE +T +A N+L + +E+ +V+F + + KI + SRC + + ++ I
Sbjct: 126 IIDEVHMLTKEAFNSLLKTLEEPPVHVKFFLATTEIAKIPNTISSRCQKMLLKRISEETI 185
Query: 715 VPRLQEIVTTEGVKMSEGGMKALLTWSGGDM 807
+ +L I EG + S + + + G +
Sbjct: 186 IDKLATIAKQEGTETSREALLPIAKAAQGSL 216
>UniRef50_Q83FL2 Cluster: DNA polymerase III gamma and tau subunit;
n=2; Tropheryma whipplei|Rep: DNA polymerase III gamma
and tau subunit - Tropheryma whipplei (strain Twist)
(Whipple's bacillus)
Length = 522
Score = 62.1 bits (144), Expect = 2e-08
Identities = 48/208 (23%), Positives = 93/208 (44%), Gaps = 19/208 (9%)
Frame = +1
Query: 241 KYRPKRLDDLVSHDDIIKTINQFMKENQLPHL-LFYGPPGTGKTSTILACAKQMY----- 402
+YRP+ ++V D + ++ + N+L H LF GP G GKT++ A+ +
Sbjct: 11 RYRPEVFSEMVGQDGVTGLLSSALDNNRLGHAYLFSGPRGCGKTTSARVFARCLNCVNGP 70
Query: 403 --TPQQFSSMVLELNASDDRGIGIVRGQILSFAST--------RTIFKAGP---KLIILD 543
+P ++L S + + ++ S R IF ++ ILD
Sbjct: 71 TSSPCGKCQSCIDLGRSGNGSLDVIEIDAASHNGVDDARALRERAIFAPAQSRFRIFILD 130
Query: 544 EADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPR 723
EA +T NAL +I+E+ +V+F K++ ++SR + FA + + P
Sbjct: 131 EAHMVTTQGFNALLKIVEEPPAHVKFIFATTEPEKVLGTIRSRTFSYPFALVSASVMQPY 190
Query: 724 LQEIVTTEGVKMSEGGMKALLTWSGGDM 807
+ +I E +++ +G + ++ GG +
Sbjct: 191 IADICNKEKIRVEDGVLPLVVRAGGGSV 218
>UniRef50_Q4L3D4 Cluster: DNA polymerase III gamma and tau subunits;
n=17; Bacilli|Rep: DNA polymerase III gamma and tau
subunits - Staphylococcus haemolyticus (strain JCSC1435)
Length = 571
Score = 62.1 bits (144), Expect = 2e-08
Identities = 52/209 (24%), Positives = 94/209 (44%), Gaps = 21/209 (10%)
Frame = +1
Query: 244 YRPKRLDDLVSHDDIIKTINQFMKENQLPHL-LFYGPPGTGKTSTILACAKQM--YTPQQ 414
+RP+ D+V + + KT+ + + + H +F GP GTGKTS AK + PQ
Sbjct: 10 FRPQSFQDVVGQEHVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNPQD 69
Query: 415 ----------------FSSMVLELNASDDRGIGIVRG--QILSFASTRTIFKAGPKLIIL 540
+ V+E++A+ + G+ +R + +A + + +K + I+
Sbjct: 70 GEPCNECAICKGITQGTNGDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYK----VYII 125
Query: 541 DEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVP 720
DE +T A NAL + +E+ + F + KI P + SR RF F + +QI
Sbjct: 126 DEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAIGTEQITD 185
Query: 721 RLQEIVTTEGVKMSEGGMKALLTWSGGDM 807
RL+ + + + ++ + S G M
Sbjct: 186 RLRFVAEEQQLDYDNEALEFIAKASEGGM 214
>UniRef50_Q9M9R7 Cluster: F14L17.24 protein; n=2; Arabidopsis
thaliana|Rep: F14L17.24 protein - Arabidopsis thaliana
(Mouse-ear cress)
Length = 1071
Score = 62.1 bits (144), Expect = 2e-08
Identities = 51/210 (24%), Positives = 97/210 (46%), Gaps = 20/210 (9%)
Frame = +1
Query: 238 EKYRPKRLDDLVSHDDIIKTINQFMKENQLPHL-LFYGPPGTGKTST--ILACA------ 390
+KY+P D+L+ +++++ +K+ ++ H+ LF GP GTGKTST IL+ A
Sbjct: 426 QKYKPMFFDELIGQSIVVQSLMNAVKKGRVAHVYLFQGPRGTGKTSTARILSAALNCDVV 485
Query: 391 -KQM----YTPQQFSSM------VLELNASDDRGIGIVRGQILSFASTRTIFKAGPKLII 537
++M Y + M +LEL+A G VR + + K+ +
Sbjct: 486 TEEMKPCGYCKECSDYMLGKSRDLLELDAGKKNGAEKVRYLLKKLLTLAPQSSQRYKVFV 545
Query: 538 LDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIV 717
+DE + + +L + +E + F I L + +QSRC ++ F ++ IV
Sbjct: 546 IDECHLLPSRTWLSLLKFLENPLQKFVFVCITTDLDNVPRTIQSRCQKYIFNKVRDGDIV 605
Query: 718 PRLQEIVTTEGVKMSEGGMKALLTWSGGDM 807
RL++I + E + + + + + G +
Sbjct: 606 VRLRKIASDENLDVESQALDLIALNADGSL 635
>UniRef50_UPI00006CAE51 Cluster: ATPase, AAA family protein; n=1;
Tetrahymena thermophila SB210|Rep: ATPase, AAA family
protein - Tetrahymena thermophila SB210
Length = 1242
Score = 61.7 bits (143), Expect = 2e-08
Identities = 59/198 (29%), Positives = 91/198 (45%), Gaps = 26/198 (13%)
Frame = +1
Query: 241 KYRPKRLDDLVSHDDIIKTINQFMK--ENQLPH----------------LLFYGPPGTGK 366
KY P+ L+D V ++ IK + ++ EN + H L GPPG GK
Sbjct: 645 KYAPQELNDCVGNEAQIKKLENWLVNWENVVVHKQKVQGNWKENPGSRACLISGPPGIGK 704
Query: 367 TSTILACAKQMYTPQQFSSMVLELNASDDRGIGIVRGQILSFASTRTI-FK----AGPKL 531
TST+ A Q+++ ++E NASD R + I + FK + +
Sbjct: 705 TSTVRLLA------QKYNMNIIEWNASDVRNKNAIETIINPLKDNTVLNFKHEVSSQRSI 758
Query: 532 IILDEADAMTND---AQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLK 702
I++DE D M++ AL +II K T+N FC+ + + + +L S C RF
Sbjct: 759 ILMDEVDGMSSGDIGGNQALMKII-KETKNPIFCVCNDRYSQKLRSLASICFDVRFYKPN 817
Query: 703 QDQIVPRLQEIVTTEGVK 756
+ QI RL E+ EG+K
Sbjct: 818 KGQIAKRLLEVCRKEGLK 835
>UniRef50_Q7NXL6 Cluster: DNA polymerase subunits gamma and tau;
n=1; Chromobacterium violaceum|Rep: DNA polymerase
subunits gamma and tau - Chromobacterium violaceum
Length = 639
Score = 61.7 bits (143), Expect = 2e-08
Identities = 51/208 (24%), Positives = 94/208 (45%), Gaps = 19/208 (9%)
Frame = +1
Query: 241 KYRPKRLDDLVSHDDIIKTINQFMKENQLPHL-LFYGPPGTGKTSTILACAKQMYTP--- 408
K+RPKR DLV + +++ ++ +KE +L H L G G GKT+ AK +
Sbjct: 9 KWRPKRFADLVGQEHVVRALSNALKEQRLHHAYLLTGTRGVGKTTIARILAKSLNCETGT 68
Query: 409 -----------QQFSSM----VLELNASDDRGIGIVRGQILSFASTRTIFKAGPKLIILD 543
+Q S +LE++A+ + GI +R + + T+ + K+ I+D
Sbjct: 69 TAEPCGECQACRQIDSGRFVDLLEIDAASNTGIDNIREVLENAQYAPTMGRF--KVYIID 126
Query: 544 EADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPR 723
E ++ A NA+ + +E+ +V+F + K+ + SRC +F + Q+
Sbjct: 127 EVHMLSKSAFNAMLKTLEEPPGHVKFILATTDPQKVPVTVLSRCLQFSLRNMTPQQVSSH 186
Query: 724 LQEIVTTEGVKMSEGGMKALLTWSGGDM 807
L ++ EG+ + L + G M
Sbjct: 187 LAHMLDIEGIHYEAPALALLGRAASGSM 214
>UniRef50_A3ISF6 Cluster: DNA-directed DNA polymerase; n=3;
Cyanobacteria|Rep: DNA-directed DNA polymerase -
Cyanothece sp. CCY 0110
Length = 692
Score = 61.7 bits (143), Expect = 2e-08
Identities = 51/194 (26%), Positives = 95/194 (48%), Gaps = 21/194 (10%)
Frame = +1
Query: 241 KYRPKRLDDLVSHDDIIKTINQFMKENQL-PHLLFYGPPGTGKTSTILACAKQMY----- 402
KYRP+ DLV + I T++ + ++ P LF GP GTGKTS+ AK +
Sbjct: 16 KYRPQTFADLVGQEAIATTLSNAIASQRIAPAYLFTGPRGTGKTSSARILAKSLNCLAVE 75
Query: 403 ----TP----------QQFSSM-VLELNASDDRGIGIVRGQILSFASTRTIFKAGPKLII 537
P + S++ V+E++A+ + G+ +R +I+ + + + K+ +
Sbjct: 76 VPTAAPCGQCEVCRAITRGSALDVIEIDAASNTGVDNIR-EIIERSQFAPV-QCRYKVYV 133
Query: 538 LDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIV 717
+DE ++ A NAL + +E+ E V F + +++P + SRC RF + + + +V
Sbjct: 134 IDECHMLSVAAFNALLKTLEEPPERVIFVLATTDPQRVLPTILSRCQRFDYRRIPLEAMV 193
Query: 718 PRLQEIVTTEGVKM 759
L I E +++
Sbjct: 194 NHLTIIAQKENIEI 207
>UniRef50_A1K419 Cluster: DNA polymerase III subunit Tau; n=2;
Azoarcus|Rep: DNA polymerase III subunit Tau - Azoarcus
sp. (strain BH72)
Length = 662
Score = 61.7 bits (143), Expect = 2e-08
Identities = 55/209 (26%), Positives = 94/209 (44%), Gaps = 20/209 (9%)
Frame = +1
Query: 241 KYRPKRLDDLVSHDDIIKTINQFMKENQLPHL-LFYGPPGTGKT--STILACAKQMYT-- 405
K+RPK LV + +++ ++ + +L H LF G G GKT S ILA A T
Sbjct: 9 KWRPKSFGTLVGQEHVVRALSHALATGRLHHAYLFTGTRGVGKTTISRILAKALNCETGV 68
Query: 406 ---------------PQQFSSMVLELNASDDRGIGIVRGQILSFASTRTIFKAGPKLIIL 540
+F V E++A+ +RG+ + +L A + + K+ ++
Sbjct: 69 TAEPCGQCEACRAIDADRFPDYV-EMDAASNRGVEDMAA-LLDKAVYAPV-QGRYKVYMI 125
Query: 541 DEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVP 720
DE +T A NA+ + +E+ E+V+F + KI + SRC +F + Q IV
Sbjct: 126 DEVHMLTGHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPQGHIVE 185
Query: 721 RLQEIVTTEGVKMSEGGMKALLTWSGGDM 807
L ++T E V ++ + + G M
Sbjct: 186 HLDRVLTAEAVPFEPPALRHIAKAANGSM 214
>UniRef50_A1GG63 Cluster: DNA polymerase III, subunits gamma and
tau; n=2; Salinispora|Rep: DNA polymerase III, subunits
gamma and tau - Salinispora arenicola CNS205
Length = 888
Score = 61.7 bits (143), Expect = 2e-08
Identities = 51/210 (24%), Positives = 102/210 (48%), Gaps = 23/210 (10%)
Frame = +1
Query: 241 KYRPKRLDDLVSHDDIIKTINQFMKENQLPHL-LFYGPPGTGKTSTILACAKQMY----- 402
KYRP+ +++ + + + ++Q ++ +L H LF GP G GKTS+ A+ +
Sbjct: 62 KYRPRTFAEIIGQEHVTEPLSQALRSGRLNHAYLFSGPRGCGKTSSARILARSLNCEHGP 121
Query: 403 TPQQFSSM---------------VLELNASDDRGIGIVRG--QILSFASTRTIFKAGPKL 531
TP+ + V+E++A+ G+ R + FA ++ FK +
Sbjct: 122 TPEPCGTCGSCRALATDGAGSIDVIEIDAASHGGVDDARELREKAFFAPAQSRFK----I 177
Query: 532 IILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQ 711
++DEA +++ NAL +++E+ E V+F K++ ++SR + F +
Sbjct: 178 YVIDEAHMVSSAGFNALLKLVEEPPEYVKFIFATTEPEKVLGTIKSRTHHYPFRLIPPKV 237
Query: 712 IVPRLQEIVTTEGVKMSEGGMKALLTWSGG 801
+ P L+++ EGV++ E + L+ +GG
Sbjct: 238 LRPYLEQLCQAEGVQV-EPAVFPLVVRAGG 266
>UniRef50_A0JSD4 Cluster: DNA polymerase III, subunits gamma and
tau; n=3; Micrococcineae|Rep: DNA polymerase III,
subunits gamma and tau - Arthrobacter sp. (strain FB24)
Length = 1078
Score = 61.7 bits (143), Expect = 2e-08
Identities = 51/210 (24%), Positives = 100/210 (47%), Gaps = 21/210 (10%)
Frame = +1
Query: 241 KYRPKRLDDLVSHDDIIKTINQFMKENQLPHL-LFYGPPGTGKTST--ILA--------- 384
+YRP D++ + + + + +++N++ H LF GP G GKT++ ILA
Sbjct: 10 RYRPDSFADVIGQEHVTEPLMTALRKNRVNHAYLFSGPRGCGKTTSARILARCLNCAEGP 69
Query: 385 ----CAK-----QMYTPQQFSSMVLELNASDDRGIGIVRGQILSFASTRTIFKAGPKLII 537
C K ++ S V+E++A+ G+ R L +T + K+ I
Sbjct: 70 TDTPCGKCPSCIELARGGSGSLDVIEIDAASHGGVDDARD--LRERATYAPVRDRYKIFI 127
Query: 538 LDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIV 717
+DEA +T+ NAL +I+E+ E+++F K+I ++SR + F + + ++
Sbjct: 128 IDEAHMVTSAGFNALLKIVEEPPEHIKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEPLM 187
Query: 718 PRLQEIVTTEGVKMSEGGMKALLTWSGGDM 807
L+ + E V ++ G + ++ GG +
Sbjct: 188 AYLELLCNQENVPVAPGVLSLVIRAGGGSV 217
>UniRef50_Q0W3P4 Cluster: Replication factor C large subunit; n=1;
uncultured methanogenic archaeon RC-I|Rep: Replication
factor C large subunit - Uncultured methanogenic
archaeon RC-I
Length = 553
Score = 61.7 bits (143), Expect = 2e-08
Identities = 52/181 (28%), Positives = 86/181 (47%), Gaps = 8/181 (4%)
Frame = +1
Query: 238 EKYRPKRLDDLVSHDDIIKTINQFMKE--NQLPHLLFYGPPGTGKTSTILACAKQMYTPQ 411
EKYRP L D+V +D +K + Q+ + ++ YG PG GKTS LA A M
Sbjct: 12 EKYRPVSLADIVGNDAAVKALRQWAETFGTGKKAVILYGGPGVGKTSAALALAHDM---- 67
Query: 412 QFSSMVLELNASDDRGIGIVRGQILSFASTRTIFK--AGPKLIILDEADAMTND----AQ 573
+ELNASD R + +I A+ F+ G +L+ILDEAD + + +
Sbjct: 68 --GWDYIELNASDVRTKDAI-NRIAGPAAMAGTFEGTGGRRLVILDEADNLHGNYDRGGE 124
Query: 574 NALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGV 753
A+ +I ++ V +I N + + L+ + +F + + L+++ EG+
Sbjct: 125 AAIINVIRNASQPV--ILIANDMYAMSKPLRESALQIQFRAILSTSVAKVLRKVCANEGL 182
Query: 754 K 756
K
Sbjct: 183 K 183
>UniRef50_Q927D7 Cluster: DnaX protein; n=17; Bacillales|Rep: DnaX
protein - Listeria innocua
Length = 579
Score = 61.3 bits (142), Expect = 3e-08
Identities = 54/207 (26%), Positives = 91/207 (43%), Gaps = 19/207 (9%)
Frame = +1
Query: 244 YRPKRLDDLVSHDDIIKTINQFMKENQLPHL-LFYGPPGTGKTSTILACAKQMY------ 402
+RP+ D+V + + KT+ + +N+ H LF GP GTGKTS AK +
Sbjct: 10 FRPQSFQDVVGQEHVTKTLKNAIVQNKTSHAYLFSGPRGTGKTSAAKIFAKAINCEHGHD 69
Query: 403 ------------TPQQFSSMVLELNASDDRGIGIVRGQILSFASTRTIFKAGPKLIILDE 546
T VLE++A+ + G+ +R T+ K K+ I+DE
Sbjct: 70 GEPCNECEICKGTTDGSIPDVLEIDAASNNGVEEIRDIREKVKYAPTVAKY--KVYIIDE 127
Query: 547 ADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRL 726
++ A NAL + +E+ ++V F + K+ + SR RF F + I+ RL
Sbjct: 128 VHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRVQRFDFKRITTQDIIGRL 187
Query: 727 QEIVTTEGVKMSEGGMKALLTWSGGDM 807
+ I+ E + E + + + G M
Sbjct: 188 KFILEEEKIPYDEKALMIVARAAEGGM 214
>UniRef50_Q73G99 Cluster: DNA polymerase III, gamma and tau
subunits; n=14; Wolbachia|Rep: DNA polymerase III, gamma
and tau subunits - Wolbachia pipientis wMel
Length = 533
Score = 61.3 bits (142), Expect = 3e-08
Identities = 52/206 (25%), Positives = 90/206 (43%), Gaps = 17/206 (8%)
Frame = +1
Query: 241 KYRPKRLDDLVSHDDIIKTINQFMKENQLPH-LLFYGPPGTGKTST---ILACAK----Q 396
K+RP DLV D +++ + N++P +L G G GKT+T I C
Sbjct: 6 KHRPSSFKDLVGQDILVRVLENAFILNKIPQSILLSGSSGVGKTTTARIIALCLNCSLGP 65
Query: 397 MYTPQQFSSMVLEL-NASDDRGIGIVRGQILSFASTRTIF--------KAGPKLIILDEA 549
++ P L + N+S I I S + I + K+ I+DE
Sbjct: 66 IFEPCGSCENCLAIKNSSHPDVIEIDAASHTSIDDIKVILGDICYSPISSKFKVYIIDEV 125
Query: 550 DAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQ 729
+++ A NAL + +E+ +V+F + + KI + +RC RF + +IV RL
Sbjct: 126 HMLSSSAFNALLKTLEEPPSSVKFILATTEIKKIPITIIARCQRFDLHNIPVAKIVERLN 185
Query: 730 EIVTTEGVKMSEGGMKALLTWSGGDM 807
++ E + +G ++ + SG M
Sbjct: 186 DVAQKESYSIEKGALELIARHSGNSM 211
>UniRef50_Q0ASK9 Cluster: DNA polymerase III, subunits gamma and
tau; n=1; Maricaulis maris MCS10|Rep: DNA polymerase
III, subunits gamma and tau - Maricaulis maris (strain
MCS10)
Length = 606
Score = 61.3 bits (142), Expect = 3e-08
Identities = 52/212 (24%), Positives = 93/212 (43%), Gaps = 23/212 (10%)
Frame = +1
Query: 241 KYRPKRLDDLVSHDDIIKTINQFMKENQLPHL-LFYGPPGTGKTST--ILACAKQMYTPQ 411
KYRP +DL+ D +++T+ ++ H + G G GKT+T ++A A T
Sbjct: 38 KYRPDTFEDLIGQDAMVRTLTNAFAAGRIAHAYMLTGVRGVGKTTTARLIARALNFQTDG 97
Query: 412 -QFSSM-------------------VLELNASDDRGIGIVRGQILSFASTRTIFKAGPKL 531
SM V+E++A+ G+G +R +IL + A K+
Sbjct: 98 IDAPSMALGEKGRHCDAIGRSAHVDVMEMDAASRTGVGDIR-EILEGVRYAPV-SARYKV 155
Query: 532 IILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQ 711
I+DE ++ A NAL + +E+ E+ +F + K+ + SRC RF + ++
Sbjct: 156 YIIDEVHMLSTSAFNALLKTLEEPPEHAKFIFATTEIRKVPVTVLSRCQRFDLKRIDREV 215
Query: 712 IVPRLQEIVTTEGVKMSEGGMKALLTWSGGDM 807
+ L I EG + G+ + + G +
Sbjct: 216 LTDHLDRICGLEGASVERDGLSLIARAAEGSV 247
>UniRef50_A2Y6S3 Cluster: Putative uncharacterized protein; n=6;
Oryza sativa|Rep: Putative uncharacterized protein -
Oryza sativa subsp. indica (Rice)
Length = 1066
Score = 61.3 bits (142), Expect = 3e-08
Identities = 53/207 (25%), Positives = 96/207 (46%), Gaps = 17/207 (8%)
Frame = +1
Query: 238 EKYRPKRLDDLVSHDDIIKTINQFMKENQLPHL-LFYGPPGTGKTSTILACAKQM--YTP 408
+KY PK D++ +++ ++ + + ++ + +FYGP GTGKTS AK + ++P
Sbjct: 358 QKYSPKTFKDMIGQSLVVQALSNAILKRKIGLVYVFYGPHGTGKTSCARVFAKALNCHSP 417
Query: 409 QQ-----FSSMVLELNASDDRG---IGIVRGQIL-SFASTRTIFKAGP-----KLIILDE 546
+ + + N R IG V L S P ++ I+D+
Sbjct: 418 EHPRPCDSCASCIAHNLGKSRSLVEIGPVGNIDLDSIVDILDNVMLSPVPTQHRVFIVDD 477
Query: 547 ADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRL 726
+ + D + + ++IE+ V F +I L + + SRC +F F LK+ IV L
Sbjct: 478 CNTLPPDTWSVISKVIERAPRRVVFILISPNLD-LPHIIVSRCQKFFFPKLKECDIVNTL 536
Query: 727 QEIVTTEGVKMSEGGMKALLTWSGGDM 807
Q I T+EG+ + +K + + S G +
Sbjct: 537 QWISTSEGLDVDRDALKLIASRSDGSL 563
>UniRef50_UPI000050FCE9 Cluster: COG2812: DNA polymerase III,
gamma/tau subunits; n=1; Brevibacterium linens BL2|Rep:
COG2812: DNA polymerase III, gamma/tau subunits -
Brevibacterium linens BL2
Length = 1148
Score = 60.9 bits (141), Expect = 4e-08
Identities = 51/212 (24%), Positives = 102/212 (48%), Gaps = 23/212 (10%)
Frame = +1
Query: 241 KYRPKRLDDLVSHDDIIKTINQFMKENQLPHL-LFYGPPGTGKTST--ILA----CAK-- 393
+YRP+ D+++ + + + ++ ++ H LF GP G GKT++ ILA CAK
Sbjct: 8 RYRPETFDEVIGQEHVTDPLKAAIERGRINHAYLFSGPRGCGKTTSARILARCLNCAKGP 67
Query: 394 ------------QMYTPQQFSSMVLELNASDDRGIGIVRG--QILSFASTRTIFKAGPKL 531
+ S V+E++A+ G+ R + +A R +K +
Sbjct: 68 TPVPCGECPSCEDLANGGPGSLDVVEIDAASHNGVDDARDLRERAIYAPARDRYK----V 123
Query: 532 IILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQ 711
ILDEA +T+ NAL +I+E+ +++F K+I ++SR + F + +
Sbjct: 124 FILDEAHMVTSQGFNALLKIVEEPPPHIKFIFATTEPEKVIGTIRSRTHHYPFRLVPPEA 183
Query: 712 IVPRLQEIVTTEGVKMSEGGMKALLTWSGGDM 807
+ ++++ EGV++++G + ++ GG +
Sbjct: 184 LGNYMEDLCNREGVQVAKGVLPLVVRAGGGSV 215
>UniRef50_A6EHG2 Cluster: DNA polymerase III, tau and gamma
subunits; n=1; Pedobacter sp. BAL39|Rep: DNA polymerase
III, tau and gamma subunits - Pedobacter sp. BAL39
Length = 624
Score = 60.9 bits (141), Expect = 4e-08
Identities = 56/216 (25%), Positives = 90/216 (41%), Gaps = 21/216 (9%)
Frame = +1
Query: 223 FLRRVEKYRPKRLDDLVSHDDIIKTINQFMKENQLPH-LLFYGPPGTGKTSTILACAKQM 399
F+ KYRP + +V I T+ ++ NQL LF GP G GKT+ AK +
Sbjct: 4 FIVSARKYRPATFETVVGQQHITGTLKNAIRNNQLAQAFLFCGPRGVGKTTCARILAKTI 63
Query: 400 ----YTPQQ---------------FSSMVLELNASDDRGIGIVRGQILSFASTRTIFKAG 522
T +Q S EL+A+ + + +R I R +AG
Sbjct: 64 NCTNLTAEQEACGTCESCISFQTGHSFNFHELDAASNNSVDDIRSLI---DQVRIPPQAG 120
Query: 523 P-KLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPL 699
K+ I+DE ++ +A NA + +E+ F + KI+P + SRC F F +
Sbjct: 121 KYKIYIIDEVHMLSANAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSRCQIFDFNRI 180
Query: 700 KQDQIVPRLQEIVTTEGVKMSEGGMKALLTWSGGDM 807
+ D I L I E + + G+ + + G +
Sbjct: 181 QVDDISSHLNRIAIRENISVEADGLHIIAQKADGGL 216
>UniRef50_A2G4Z2 Cluster: Differentiation specific element binding
protein, putative; n=1; Trichomonas vaginalis G3|Rep:
Differentiation specific element binding protein,
putative - Trichomonas vaginalis G3
Length = 876
Score = 60.9 bits (141), Expect = 4e-08
Identities = 57/200 (28%), Positives = 90/200 (45%), Gaps = 11/200 (5%)
Frame = +1
Query: 238 EKYRPKRLDDLVSHDDIIKTINQFMKEN---QLPHL-LFYGPPGTGK-TSTILACAKQMY 402
EKYRP++L D+VS+ +K + F + + P + GPPG GK T+ L Y
Sbjct: 159 EKYRPRQLSDIVSNYGALKHLVDFFEAYDPYEKPKCAILCGPPGIGKSTAATLVALYCDY 218
Query: 403 TPQQFSSMVLELNASDDRGIGIVRGQILSFASTRTI-FKAGPKLI--ILDEADAMTNDAQ 573
P +ELNASD R + + I K+G I I DE D M+ +
Sbjct: 219 HP-------IELNASDTRSKKSLNETFPDIFDNKAIDAKSGQDQICLIFDEVDGMSAGDR 271
Query: 574 NALRRIIEKYTE---NVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTT 744
L+ + K+ + N CI + + + L R +FA + ++ RL+ I
Sbjct: 272 GGLQELT-KFVDRAINPVICICNDRENRKLETLAKRSVDIKFATPTEQEVASRLRFICEQ 330
Query: 745 EGVKMSEGGMKALLTWSGGD 804
EG+K+S+ + + S GD
Sbjct: 331 EGMKVSDESLLRIAQSSNGD 350
>UniRef50_Q7VRB7 Cluster: DNA polymerase III subunit gamma; n=2;
Candidatus Blochmannia|Rep: DNA polymerase III subunit
gamma - Blochmannia floridanus
Length = 541
Score = 60.5 bits (140), Expect = 5e-08
Identities = 52/190 (27%), Positives = 90/190 (47%), Gaps = 17/190 (8%)
Frame = +1
Query: 241 KYRPKRLDDLVSHDDIIKTINQFMKENQLPHL-LFYGPPGTGKTSTILACAKQMYTPQQF 417
K+RPK+ ++V ++K I + N++ H +F G G+GKT+ AK + Q
Sbjct: 9 KWRPKKFCEVVGQLHVVKAIIHSLNLNRMHHAYIFTGTRGSGKTTIARLFAKGLNCETQI 68
Query: 418 SSMVLEL--NASD-DRG-----IGIVRGQILSFASTRTIF---KAGP-----KLIILDEA 549
+S V N SD + G I I TR+ + P K+ ++DE
Sbjct: 69 TSDVCGSCKNCSDIESGCFIDLIEIDAASKSKVEDTRSFLDNVQYSPSQGKFKVYLIDEV 128
Query: 550 DAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQ 729
++ + NAL + +E+ ++V+F ++ K+ + SRC +F F PL QIV +L+
Sbjct: 129 HMLSRHSFNALLKTLEEPPKHVKFILVTTEYQKLPETILSRCLQFYFKPLNIIQIVTQLK 188
Query: 730 EIVTTEGVKM 759
I E + +
Sbjct: 189 YICNQENINI 198
>UniRef50_Q1GV06 Cluster: DNA polymerase III, subunits gamma and
tau; n=6; Sphingomonadales|Rep: DNA polymerase III,
subunits gamma and tau - Sphingopyxis alaskensis
(Sphingomonas alaskensis)
Length = 565
Score = 60.5 bits (140), Expect = 5e-08
Identities = 51/196 (26%), Positives = 88/196 (44%), Gaps = 24/196 (12%)
Frame = +1
Query: 241 KYRPKRLDDLVSHDDIIKTINQFMKENQLPH-LLFYGPPGTGKTST--ILACAKQMYTPQ 411
KYRP+ +L+ D ++KT+ + ++L H L G G GKTST ++A A P
Sbjct: 35 KYRPQTFAELIGQDAMVKTLGNAIARDRLAHAFLMTGVRGVGKTSTARLIAKALNCIGPD 94
Query: 412 QFSSM---------------------VLELNASDDRGIGIVRGQILSFASTRTIFKAGPK 528
V+E++A+ + G+ VR +I+ + A K
Sbjct: 95 GQGGPTIDPCGVCEPCRAITEGRHIDVIEMDAASNTGVDDVR-EIIEAVRYAAV-SARYK 152
Query: 529 LIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQD 708
+ I+DE ++ +A NAL + +E+ +V+F + K+ + SRC RF + D
Sbjct: 153 IYIIDEVHMLSRNAFNALLKTLEEPPPHVKFLFATTEVNKVPVTVLSRCQRFDLRRITPD 212
Query: 709 QIVPRLQEIVTTEGVK 756
+ I+ EGV+
Sbjct: 213 MLFAHFSAILQKEGVE 228
>UniRef50_A5P451 Cluster: DNA-directed DNA polymerase; n=1;
Methylobacterium sp. 4-46|Rep: DNA-directed DNA
polymerase - Methylobacterium sp. 4-46
Length = 699
Score = 60.5 bits (140), Expect = 5e-08
Identities = 53/204 (25%), Positives = 87/204 (42%), Gaps = 16/204 (7%)
Frame = +1
Query: 238 EKYRPKRLDDLVSHDDIIKTINQFMKENQLPHLLFYGPPGTGKT--STILACAKQMYTPQ 411
EKYRP+ DLV D + + ++E Q+ LL +GP G GKT + +L A P
Sbjct: 12 EKYRPRVFGDLVGQDGAVAWCKERVRERQVKTLLLHGPSGCGKTTIARVLGNALNCRAPV 71
Query: 412 QFS-----SMVLELNASDDRGI---------GIVRGQILSFASTRTIFKAGPKLIILDEA 549
S + E +D G+ ++L AS+ + + K+ LDEA
Sbjct: 72 DGSPCLSCDICREFKPKNDTYYREHLCASQGGLEDARMLVRASSASGSRKYRKIFALDEA 131
Query: 550 DAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQ 729
MT A +AL +E+ F ++ L I A+ +R R P+ + + L
Sbjct: 132 HRMTGAAFDALLSRLEEPNSTTVFMLLTTDLEAIPEAVLTRSLRIEIRPISDEDALTYLN 191
Query: 730 EIVTTEGVKMSEGGMKALLTWSGG 801
+I EG++ ++ L+ G
Sbjct: 192 KICRHEGLEPEAAALQLLVETGRG 215
>UniRef50_A4BJR3 Cluster: DNA polymerase III subunits gamma and tau;
n=1; Reinekea sp. MED297|Rep: DNA polymerase III
subunits gamma and tau - Reinekea sp. MED297
Length = 677
Score = 60.5 bits (140), Expect = 5e-08
Identities = 52/206 (25%), Positives = 91/206 (44%), Gaps = 17/206 (8%)
Frame = +1
Query: 241 KYRPKRLDDLVSHDDIIKTINQFMKENQLPHL-LFYGPPGTGKTSTILACAKQMYTPQQF 417
K+RP D++V ++K + + + +L H LF G G GKT+ AK + Q
Sbjct: 9 KWRPGTFDEMVGQVHVLKALVNALDQERLHHAYLFTGTRGVGKTTIARLLAKSLNCEQGV 68
Query: 418 SSMVLELNAS-----DDRGIGIVRGQILS---FASTRTIFKA---GP-----KLIILDEA 549
SS AS + R + ++ S TR + + P K+ ++DE
Sbjct: 69 SSKPCGQCASCREIAEGRFVDLIEVDAASRTKVEDTRELLENVQYAPTRGRFKVYLIDEV 128
Query: 550 DAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQ 729
++ + NAL + +E+ +V+F + K+ + SRC +F + ++ IV L
Sbjct: 129 HMLSTSSFNALLKTLEEPPPHVKFLLATTDPQKLPVTVLSRCLQFNLKNMSREHIVQHLN 188
Query: 730 EIVTTEGVKMSEGGMKALLTWSGGDM 807
I+T E V E + A+ + G M
Sbjct: 189 HILTVEQVPFDEPSLWAIAEGAQGSM 214
>UniRef50_Q9SB72 Cluster: DNA polymerase III like protein; n=2;
Eukaryota|Rep: DNA polymerase III like protein -
Arabidopsis thaliana (Mouse-ear cress)
Length = 815
Score = 60.5 bits (140), Expect = 5e-08
Identities = 48/208 (23%), Positives = 98/208 (47%), Gaps = 18/208 (8%)
Frame = +1
Query: 238 EKYRPKRLDDLVSHDDIIKTINQFMKENQLPHL-LFYGPPGTGKTST--ILACAKQMYTP 408
+K+RPK D+LV + ++K + + ++ + LF+GP GTGKTST I A A +
Sbjct: 243 QKFRPKSFDELVGQEVVVKCLLSTILRGRITSVYLFHGPRGTGKTSTSKIFAAALNCLSQ 302
Query: 409 QQFS---SMVLELNA-SDDRGIGIVR---GQILSFASTRTIFKAGP--------KLIILD 543
S + E + RG ++ G++ + R++ K+ K+ I+D
Sbjct: 303 AAHSRPCGLCSECKSYFSGRGRDVMETDSGKLNRPSYLRSLIKSASLPPVSSRFKVFIID 362
Query: 544 EADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPR 723
E + + L ++ ++++ F ++ + L K+ + SR ++ F+ + I +
Sbjct: 363 ECQLLCQETWGTLLNSLDNFSQHSVFILVTSELEKLPRNVLSRSQKYHFSKVCDADISTK 422
Query: 724 LQEIVTTEGVKMSEGGMKALLTWSGGDM 807
L +I EG+ +G + + + S G +
Sbjct: 423 LAKICIEEGIDFDQGAVDFIASKSDGSL 450
>UniRef50_Q8TZC5 Cluster: Replication factor C large subunit; n=1;
Methanopyrus kandleri|Rep: Replication factor C large
subunit - Methanopyrus kandleri
Length = 510
Score = 60.5 bits (140), Expect = 5e-08
Identities = 55/214 (25%), Positives = 95/214 (44%), Gaps = 23/214 (10%)
Frame = +1
Query: 235 VEKYRPKRLDDLVSHDDIIKTINQFMKE---NQLPH---LLFYGPPGTGKTSTILACAKQ 396
VEKYRP+ L +LV+ D+ K + + E +P +L +GPPGTGKTS A A
Sbjct: 5 VEKYRPRSLKELVNQDEAKKELAAWANEWARGSIPEPRAVLLHGPPGTGKTSAAYALA-- 62
Query: 397 MYTPQQFSSMVLELNASDDRGIGIVRGQILSFASTRTIFK----AGPK-----------L 531
F V+ELNASD R ++ + +++R++ + AG L
Sbjct: 63 ----HDFGWDVIELNASDKRTRNVIEKIVGGASTSRSLLRMTREAGGDYEHVEGHSDRVL 118
Query: 532 IILDEADAMTNDAQNALRRIIEKYTENVR--FCIICNYLGKIIPALQSRCTRFRFAPLKQ 705
+++DE D + + + R ++ N + +L+ F L+
Sbjct: 119 VLVDEVDGIDPREDRGGVTALTRAVRQARNPMVLVANDPWVLPKSLRDAVRMIEFRRLRV 178
Query: 706 DQIVPRLQEIVTTEGVKMSEGGMKALLTWSGGDM 807
+ IV L+ I EG++ E ++ + + GD+
Sbjct: 179 NDIVEALRRICEREGIEYEEVALRRIAKRARGDL 212
>UniRef50_Q97M98 Cluster: DNA-polymerase III, gamma subunit; n=1;
Clostridium acetobutylicum|Rep: DNA-polymerase III,
gamma subunit - Clostridium acetobutylicum
Length = 314
Score = 60.1 bits (139), Expect = 7e-08
Identities = 38/191 (19%), Positives = 92/191 (48%), Gaps = 4/191 (2%)
Frame = +1
Query: 256 RLDDLVSHDDIIKTINQFMKENQLPH-LLFYGPPGTGKTSTILACAKQMYTP---QQFSS 423
+ +++ H+ + K ++ +K + PH ++ G G GK+ A ++ ++++
Sbjct: 2 KFENIFGHEAVRKQFDELVKNKRFPHAIMLCGEDGIGKSIVAKEIAAKLLNKTEIKEYAD 61
Query: 424 MVLELNASDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEKY 603
++ +D + I + + + + + ++ KLI++ + D MT QNA + IE+
Sbjct: 62 LIEWKILNDKKSISVDQVRKIIEEVNKKPYEGNNKLIVVHDMDYMTIQGQNAFLKTIEEP 121
Query: 604 TENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKAL 783
V ++C G+++ ++SRC ++ L + + +++ ++ +E M+ L
Sbjct: 122 PLGVYIILLCQSQGRVLDTVRSRCQIYKLNRLDEHE----MRKFISGTYNVTNEDEMRTL 177
Query: 784 LTWSGGDMXKV 816
L +S G KV
Sbjct: 178 LAFSDGIPGKV 188
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 755,679,854
Number of Sequences: 1657284
Number of extensions: 14165511
Number of successful extensions: 43703
Number of sequences better than 10.0: 500
Number of HSP's better than 10.0 without gapping: 41026
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43348
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 70789333940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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