Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_F_F01
(817 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex... 246 4e-66
SPAC23D3.02 |rfc2||DNA replication factor C complex subunit Rfc2... 204 2e-53
SPAC1687.03c |rfc4||DNA replication factor C complex subunit Rfc... 166 4e-42
SPBC83.14c |rfc5||DNA replication factor C complex subunit Rfc5 ... 64 2e-11
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc... 41 2e-04
SPAC14C4.13 |rad17||RFC related checkpoint protein Rad17|Schizos... 41 2e-04
SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces pombe... 40 6e-04
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni... 38 0.002
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 37 0.004
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 36 0.009
SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1 |Schiz... 33 0.037
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 33 0.037
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 32 0.085
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 32 0.085
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 32 0.11
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 31 0.15
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p... 31 0.20
SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces po... 31 0.26
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 31 0.26
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 31 0.26
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S... 30 0.34
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 30 0.45
SPAC1834.11c |sec18||secretory pathway protein Sec18 |Schizosacc... 30 0.45
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 30 0.45
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 29 0.60
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 29 0.60
SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr 3... 29 0.79
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 29 1.0
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 29 1.0
SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78 |Schizosacch... 29 1.0
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 28 1.4
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 28 1.8
SPAC23C11.13c |hpt1||xanthine phosphoribosyltransferase |Schizos... 27 2.4
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po... 27 2.4
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha... 27 2.4
SPAC227.14 |||nicotinamide riboside kinase|Schizosaccharomyces p... 27 3.2
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ... 27 3.2
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 27 4.2
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 27 4.2
SPAC56E4.03 |||aromatic aminotransferase |Schizosaccharomyces po... 27 4.2
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 27 4.2
SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|c... 26 7.4
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 25 9.7
>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 246 bits (601), Expect = 4e-66
Identities = 117/193 (60%), Positives = 146/193 (75%)
Frame = +1
Query: 235 VEKYRPKRLDDLVSHDDIIKTINQFMKENQLPHLLFYGPPGTGKTSTILACAKQMYTPQQ 414
VEKYRP L+D+VSH DII T+ +F+ N++PH+LFYGPPGTGKTSTILACA+++Y P
Sbjct: 26 VEKYRPANLEDVVSHKDIISTLEKFISSNRVPHMLFYGPPGTGKTSTILACARKIYGPN- 84
Query: 415 FSSMVLELNASDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRII 594
+ + ++ELNASDDRGI VR QI +FASTR IF + K+IILDEADAMT AQNALRR+I
Sbjct: 85 YRNQLMELNASDDRGIDAVREQIKNFASTRQIFASTFKMIILDEADAMTLAAQNALRRVI 144
Query: 595 EKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGM 774
EKYT+NVRFCIICNY+ KI PA+QSRCTRFRF PL +I + ++ +E +
Sbjct: 145 EKYTKNVRFCIICNYINKISPAIQSRCTRFRFQPLPPKEIEKTVDHVIQSEHCNIDPDAK 204
Query: 775 KALLTWSGGDMXK 813
A+L S GDM K
Sbjct: 205 MAVLRLSKGDMRK 217
>SPAC23D3.02 |rfc2||DNA replication factor C complex subunit
Rfc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 340
Score = 204 bits (497), Expect = 2e-53
Identities = 100/199 (50%), Positives = 132/199 (66%), Gaps = 6/199 (3%)
Frame = +1
Query: 235 VEKYRPKRLDDLVSHDDIIKTINQFMKENQLPHLLFYGPPGTGKTSTILACAKQMYTPQQ 414
VE YRPK LD + S + ++ + + + N LPH+LFYG PGTGKTSTILA +++++ PQ
Sbjct: 22 VELYRPKTLDQVSSQESTVQVLKKTLLSNNLPHMLFYGSPGTGKTSTILALSRELFGPQL 81
Query: 415 FSSMVLELNASDDRGIGIVRGQILSFASTRTIFKAGP------KLIILDEADAMTNDAQN 576
S VLELNASD+RGI I+R ++ SFA T K K+IILDEAD+MT DAQ
Sbjct: 82 MKSRVLELNASDERGISIIREKVKSFAKTTVTNKVDGYPCPPFKIIILDEADSMTQDAQA 141
Query: 577 ALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVK 756
ALRR +E Y RFC+ICNY+ +II L SRC+++RF PL + +V RL+ I + V
Sbjct: 142 ALRRTMESYARITRFCLICNYMTRIIDPLSSRCSKYRFKPLDNENMVKRLEFIAADQAVS 201
Query: 757 MSEGGMKALLTWSGGDMXK 813
M G + AL+ SGGDM K
Sbjct: 202 MEPGVVNALVECSGGDMRK 220
>SPAC1687.03c |rfc4||DNA replication factor C complex subunit
Rfc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 166 bits (403), Expect = 4e-42
Identities = 87/192 (45%), Positives = 118/192 (61%), Gaps = 1/192 (0%)
Frame = +1
Query: 235 VEKYRPKRLDDLVSHDDIIKTINQFMKENQLPHLLFYGPPGTGKTSTILACAKQMYTPQQ 414
VEKYRP LDD+V +++ I + KE +PHL+ G PG GKT++IL A + P
Sbjct: 24 VEKYRPIVLDDIVGNEETIDRLKVIAKEGNMPHLVISGMPGIGKTTSILCLAHALLGPA- 82
Query: 415 FSSMVLELNASDDRGIGIVRGQILSFASTRTIFKAGP-KLIILDEADAMTNDAQNALRRI 591
+ VLELNASD+RGI +VR +I +FA + I G K+IILDEAD+MT AQ ALRR
Sbjct: 83 YKEGVLELNASDERGIDVVRNRIKAFAQKKVILPPGRHKIIILDEADSMTAGAQQALRRT 142
Query: 592 IEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGG 771
+E Y+ RF + CN KII +QSRC R++ L Q++ RL I E V ++ G
Sbjct: 143 MEIYSNTTRFALACNQSNKIIEPIQSRCAILRYSRLTDQQVLQRLLNICKAEKVNYTDDG 202
Query: 772 MKALLTWSGGDM 807
+ AL+ + GDM
Sbjct: 203 LAALIMTAEGDM 214
>SPBC83.14c |rfc5||DNA replication factor C complex subunit Rfc5
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 358
Score = 64.1 bits (149), Expect = 2e-11
Identities = 29/77 (37%), Positives = 50/77 (64%)
Frame = +1
Query: 526 KLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQ 705
K+++++ AD +T DAQ ALRR +EKY+ N+R +I N KII ++SR R A
Sbjct: 129 KVVVINVADELTRDAQAALRRTMEKYSNNIRLILIANSTSKIIEPIRSRTLMVRVAAPTP 188
Query: 706 DQIVPRLQEIVTTEGVK 756
++I+ + +I+T +G++
Sbjct: 189 EEIILVMSKILTAQGLE 205
Score = 52.8 bits (121), Expect = 6e-08
Identities = 21/58 (36%), Positives = 34/58 (58%)
Frame = +1
Query: 235 VEKYRPKRLDDLVSHDDIIKTINQFMKENQLPHLLFYGPPGTGKTSTILACAKQMYTP 408
+++YRPK L L H + + + N+ PHLL YGP G GK + ++A +++Y P
Sbjct: 4 LDQYRPKTLASLDYHKQLSERLISLSSTNEFPHLLVYGPSGAGKKTRVVAILRELYGP 61
>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 934
Score = 41.1 bits (92), Expect = 2e-04
Identities = 50/179 (27%), Positives = 79/179 (44%), Gaps = 18/179 (10%)
Frame = +1
Query: 334 LLFYGPPGTGKTSTILACAK-QMYTPQQFSSMVLELNASDDRGIGIVRGQILSFASTRTI 510
+L GPPG GKT+ AK + Y VLELNASD R ++ Q+ ++++
Sbjct: 412 VLLSGPPGIGKTTAAHLVAKLEGYD-------VLELNASDTRSKRLLDEQLFGVTDSQSL 464
Query: 511 -----FKAGP-------KLIILDEADAMTNDAQNA---LRRIIEKYTENVRFCIICNYLG 645
KA P ++I+DE D M++ + L II+K + ICN
Sbjct: 465 AGYFGTKANPVDMAKSRLVLIMDEIDGMSSGDRGGVGQLNMIIKK--SMIPIICICNDRA 522
Query: 646 --KIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKALLTWSGGDMXKV 816
K+ P L RF + + R+ I EG+K+S + L+ + DM ++
Sbjct: 523 HPKLRP-LDRTTFDLRFRRPDANSMRSRIMSIAYREGLKLSPQAVDQLVQGTQSDMRQI 580
>SPAC14C4.13 |rad17||RFC related checkpoint protein
Rad17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 606
Score = 40.7 bits (91), Expect = 2e-04
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Frame = +1
Query: 193 IYFNTTIKTLFLRRVEKYRPKRLDDLVSHDDIIKTINQFMKENQLPH--LLFYGPPGTGK 366
++ N + F EKY P++ DL H I I Q+M + L LL GP G GK
Sbjct: 59 VHLNNLKEDRFQLWFEKYIPQKAADLAVHKSKISAIKQWMLTDSLESRLLLICGPSGCGK 118
Query: 367 TSTILACAKQM 399
++ + AK++
Sbjct: 119 STAVQVLAKEL 129
>SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 504
Score = 39.5 bits (88), Expect = 6e-04
Identities = 42/178 (23%), Positives = 73/178 (41%), Gaps = 4/178 (2%)
Frame = +1
Query: 238 EKYRPKRLDDLVSHDDII---KTINQFMKENQLPHLLFYGPPGTGKTSTILACAKQMYTP 408
E+ RPK LD+ V ++++ I +++++ ++ +G GTGKT+ LA + T
Sbjct: 88 ERARPKSLDEYVGQEELVGERGIIRNLIEQDRCNSMILWGSAGTGKTT--LARLIAVTTK 145
Query: 409 QQFSSM-VLELNASDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALR 585
+F + +D R I L+ +TI I LDE Q+
Sbjct: 146 SRFIEISATSTTVADCRKIFEDSQNYLTLTGRKTI-------IFLDEVHRFNRAQQDIFL 198
Query: 586 RIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKM 759
++EK + N ++ AL SRC F L +D + L E ++
Sbjct: 199 PMVEKGLVTLIGATTENPSFRLNSALISRCPVFVLKKLTRDNVKKILNHACLLESERL 256
>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 960
Score = 37.5 bits (83), Expect = 0.002
Identities = 27/88 (30%), Positives = 39/88 (44%)
Frame = +1
Query: 334 LLFYGPPGTGKTSTILACAKQMYTPQQFSSMVLELNASDDRGIGIVRGQILSFASTRTIF 513
++ G G GKT+ A Q VLE+NASDDR V ++ S S +
Sbjct: 419 MMLTGLAGAGKTTLAHVIAHQA------GYKVLEINASDDRTAHTVHEKVSSAISNHSAL 472
Query: 514 KAGPKLIILDEADAMTNDAQNALRRIIE 597
+ P +I+DE D AL ++E
Sbjct: 473 SSQPTCVIVDEIDGGDPAFVRALLSLLE 500
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 36.7 bits (81), Expect = 0.004
Identities = 38/138 (27%), Positives = 61/138 (44%), Gaps = 10/138 (7%)
Frame = +1
Query: 175 TKNHNSIYFNTTIKTLFLRRVEKYRPKRLDDLVSHDDIIKTINQFMKE--------NQLP 330
T N+I NTT + R R + + + ++ I F+++ +LP
Sbjct: 241 TSGLNNIMTNTTEQEPMEERAINVRFSDVQGVDEAKEELEEIVDFLRDPTHFTRLGGKLP 300
Query: 331 H-LLFYGPPGTGKTSTILACAKQMYTPQQFSSMVLELNASDDRGIGIVRGQILS-FASTR 504
+L GPPGTGKT A A + P F S + D+ +G+ ++ FA+ R
Sbjct: 301 RGVLLTGPPGTGKTMLARAVAGEANVPFFFMSG----SQFDEMYVGVGAKRVRELFAAAR 356
Query: 505 TIFKAGPKLIILDEADAM 558
K P +I +DE DA+
Sbjct: 357 ---KQAPSIIFIDELDAI 371
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 35.5 bits (78), Expect = 0.009
Identities = 27/78 (34%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Frame = +1
Query: 334 LLFYGPPGTGKTSTILACAKQMYTPQQFSSMVLELNASD--DRGIGIVRGQI-LSFASTR 504
+LF+GPPGTGKT A T Q S L SD + +G Q+ L F R
Sbjct: 409 VLFHGPPGTGKTLMARVLAANCSTKNQKISFFLR-KGSDCLSKWVGEAERQLRLLFEEAR 467
Query: 505 TIFKAGPKLIILDEADAM 558
+ P +I DE D +
Sbjct: 468 ---RVQPSIIFFDEIDGL 482
>SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 355
Score = 33.5 bits (73), Expect = 0.037
Identities = 26/80 (32%), Positives = 33/80 (41%)
Frame = +1
Query: 334 LLFYGPPGTGKTSTILACAKQMYTPQQFSSMVLELNASDDRGIGIVRGQILSFASTRTIF 513
LL YGPPG GKT A AKQ Q + + + + D+ G L A
Sbjct: 128 LLLYGPPGCGKTMLAKALAKQ----SQATFINVSVGLLTDKWFG--ESNKLVDALFTLAR 181
Query: 514 KAGPKLIILDEADAMTNDAQ 573
K P +I +DE D Q
Sbjct: 182 KLEPTIIFIDEIDTFLRQRQ 201
>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 33.5 bits (73), Expect = 0.037
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Frame = +1
Query: 337 LFYGPPGTGKTSTILACAKQMYTP--QQFSSMVLELNASDDRGIGIVRGQILSFASTRTI 510
L +GPPGTGKT ACA Q + + ++++ D G +VR +FA +
Sbjct: 223 LMFGPPGTGKTLLARACAAQSNATFLKLAAPQLVQMFIGD--GAKLVRD---AFALAK-- 275
Query: 511 FKAGPKLIILDEADAM 558
+ P +I +DE DA+
Sbjct: 276 -EKSPAIIFIDELDAI 290
>SPCC576.10c |rpt3||19S proteasome regulatory subunit
Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 389
Score = 32.3 bits (70), Expect = 0.085
Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 3/92 (3%)
Frame = +1
Query: 334 LLFYGPPGTGKTSTILACAKQMYTPQQFSSMVLELNASDDRGIGIVRGQILSFASTRTIF 513
+L YGPPGTGKT + A A T F +V S+ + G + R
Sbjct: 171 VLLYGPPGTGKTMLVKAVANS--TAANFIRVV----GSEFVQKYLGEGPRMVRDVFRMAR 224
Query: 514 KAGPKLIILDEADAMTN---DAQNALRRIIEK 600
+ P +I +DE DA+ DAQ R +++
Sbjct: 225 ENAPAIIFIDEIDAIATKRFDAQTGADREVQR 256
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 32.3 bits (70), Expect = 0.085
Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 4/88 (4%)
Frame = +1
Query: 307 FMKENQLPH--LLFYGPPGTGKTSTILACAKQMYTPQQFSSMVLELNASD-DRGIGIVRG 477
F + N P +LF+GPPGTGKT A A + + S + A + +G
Sbjct: 292 FQRFNMQPPRGVLFHGPPGTGKTLMARALAAACSSENKKVSFYMRKGADCLSKWVGEAER 351
Query: 478 QI-LSFASTRTIFKAGPKLIILDEADAM 558
Q+ L F ++ P +I DE D +
Sbjct: 352 QLRLLFEEAKS---TQPSIIFFDEIDGL 376
>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 779
Score = 31.9 bits (69), Expect = 0.11
Identities = 26/98 (26%), Positives = 45/98 (45%)
Frame = +1
Query: 334 LLFYGPPGTGKTSTILACAKQMYTPQQFSSMVLELNASDDRGIGIVRGQILSFASTRTIF 513
+L +GPPG GKT A A ++ P F S+ S G + + + F +++
Sbjct: 211 VLLHGPPGCGKTMLANALANELGVP--FISISAPSIVSGMSGESEKKVREV-FEEAKSL- 266
Query: 514 KAGPKLIILDEADAMTNDAQNALRRIIEKYTENVRFCI 627
P L+ +DE DA+T ++A R + + C+
Sbjct: 267 --APCLMFIDEIDAVTPKRESAQREMERRIVAQFLTCM 302
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 31.5 bits (68), Expect = 0.15
Identities = 22/75 (29%), Positives = 34/75 (45%)
Frame = +1
Query: 334 LLFYGPPGTGKTSTILACAKQMYTPQQFSSMVLELNASDDRGIGIVRGQILSFASTRTIF 513
+L +GPPGTGKT A A + S+ ++AS + + L A
Sbjct: 495 MLLFGPPGTGKTMLARAVATES------RSVFFSISASSLTSKFLGESEKLVRALFTLAK 548
Query: 514 KAGPKLIILDEADAM 558
K P +I +DE D++
Sbjct: 549 KLSPSIIFVDEIDSL 563
>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 31.1 bits (67), Expect = 0.20
Identities = 28/73 (38%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Frame = +1
Query: 346 GPPGTGKTSTILACAKQMYTP--QQFSSMVLELNASDDRGIGIVRGQILSFASTRTIFKA 519
GPPGTGKT A A + P S LE+ G+G R + L FA+ R K
Sbjct: 336 GPPGTGKTLLAKATAGEANVPFLSVSGSEFLEMFV----GVGPSRVRDL-FATAR---KN 387
Query: 520 GPKLIILDEADAM 558
P +I +DE DA+
Sbjct: 388 APCIIFIDEIDAI 400
>SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 449
Score = 30.7 bits (66), Expect = 0.26
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +1
Query: 337 LFYGPPGTGKTSTILACAKQM 399
L YGPPG+GKTS + A A ++
Sbjct: 246 LLYGPPGSGKTSFLYALAGEL 266
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 30.7 bits (66), Expect = 0.26
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 5/94 (5%)
Frame = +1
Query: 334 LLFYGPPGTGKTSTILACAKQMYTP--QQFSSMVLELNASDDRGIGIVRGQILSFASTRT 507
++ YG PGTGKT A A Q + S +++ D G +VR Q+ + A +
Sbjct: 228 VILYGAPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGD--GPRLVR-QLFNAAEEHS 284
Query: 508 IFKAGPKLIILDEADAMTN---DAQNALRRIIEK 600
P ++ +DE DA+ DAQ+ R I++
Sbjct: 285 -----PSIVFIDEIDAIGTKRYDAQSGAEREIQR 313
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 30.7 bits (66), Expect = 0.26
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Frame = +1
Query: 334 LLFYGPPGTGKTSTILACAKQMYTPQQFSSMVLELNASDDRGIGIVRGQILS-FASTRTI 510
+L YGPPG KT T AK + T + + ++ D+ +G + F R
Sbjct: 585 VLLYGPPGCSKTIT----AKAIATETGLNFIAVKGPELFDKFVGESERAVRQVFQKAR-- 638
Query: 511 FKAGPKLIILDEADAMT 561
+A P +I DE DA+T
Sbjct: 639 -QASPSVIFFDEIDALT 654
Score = 30.3 bits (65), Expect = 0.34
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +1
Query: 334 LLFYGPPGTGKTSTILACAKQ 396
+L YGPPGTGKT + A A +
Sbjct: 316 VLLYGPPGTGKTMVMRAVAAE 336
>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 660
Score = 30.3 bits (65), Expect = 0.34
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +1
Query: 337 LFYGPPGTGKTSTILACAKQM 399
L +GPPGTGKT T++ +Q+
Sbjct: 229 LIHGPPGTGKTHTLVEIIQQL 249
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 29.9 bits (64), Expect = 0.45
Identities = 17/35 (48%), Positives = 19/35 (54%)
Frame = +1
Query: 337 LFYGPPGTGKTSTILACAKQMYTPQQFSSMVLELN 441
L GPPGTGKT TIL + T SS L+ N
Sbjct: 1290 LIQGPPGTGKTKTILGMIGAVLTS---SSQGLQFN 1321
>SPAC1834.11c |sec18||secretory pathway protein Sec18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 792
Score = 29.9 bits (64), Expect = 0.45
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +1
Query: 319 NQLPHLLFYGPPGTGKT 369
N + +L YGPPGTGKT
Sbjct: 302 NHVKGILLYGPPGTGKT 318
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 29.9 bits (64), Expect = 0.45
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +1
Query: 334 LLFYGPPGTGKTSTILACAKQ 396
+LF+GPPGTGKT A A +
Sbjct: 534 VLFFGPPGTGKTLLAKAIANE 554
Score = 29.5 bits (63), Expect = 0.60
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +1
Query: 334 LLFYGPPGTGKTSTILACAKQ 396
+L YGPPGTGKT A A +
Sbjct: 261 ILMYGPPGTGKTLMARAVANE 281
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 29.5 bits (63), Expect = 0.60
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = +1
Query: 334 LLFYGPPGTGKTSTILACAKQMYTPQQF 417
+L YGPPGTGK T+LA A +T +F
Sbjct: 182 ILLYGPPGTGK--TLLARAVAHHTDCKF 207
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 29.5 bits (63), Expect = 0.60
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +1
Query: 334 LLFYGPPGTGKTSTILACAKQM 399
+L YGPPGTGKT A A ++
Sbjct: 691 VLLYGPPGTGKTLLAKAVATEL 712
>SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 175
Score = 29.1 bits (62), Expect = 0.79
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = +1
Query: 313 KENQLPHLLFYGPPGTGKTS 372
+E +LP+++ G PGTGKT+
Sbjct: 4 EERELPNIIICGTPGTGKTT 23
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 28.7 bits (61), Expect = 1.0
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +1
Query: 334 LLFYGPPGTGKTSTILACAKQM 399
+L YGPPGTGKT A A +
Sbjct: 169 VLLYGPPGTGKTLLARAVAASL 190
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 28.7 bits (61), Expect = 1.0
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +1
Query: 337 LFYGPPGTGKTSTIL 381
L GPPGTGKT TI+
Sbjct: 1149 LIQGPPGTGKTKTII 1163
>SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 803
Score = 28.7 bits (61), Expect = 1.0
Identities = 23/96 (23%), Positives = 42/96 (43%)
Frame = +1
Query: 256 RLDDLVSHDDIIKTINQFMKENQLPHLLFYGPPGTGKTSTILACAKQMYTPQQFSSMVLE 435
+LD ++ ++ I+ Q + + GP G GKT+ + A ++ + SM
Sbjct: 109 KLDPVIGREEEIQRTIQILSRRTKNNPALVGPAGVGKTAIMEGLASRIIRGEVPESM--- 165
Query: 436 LNASDDRGIGIVRGQILSFASTRTIFKAGPKLIILD 543
D R I + G ++S A R F+ K ++ D
Sbjct: 166 ---KDKRVIVLDLGALISGAKFRGDFEERLKSVLSD 198
Score = 27.1 bits (57), Expect = 3.2
Identities = 24/99 (24%), Positives = 43/99 (43%), Gaps = 7/99 (7%)
Frame = +1
Query: 325 LPHLLFYGPPGTGKTSTILACAKQMYTPQ----QFSSMVLELNASDDRGIGIVRGQI--- 483
L LF GP G GKT+ A A+ ++ +F + + R IG G I
Sbjct: 532 LASFLFLGPTGVGKTALTKALAEFLFDTDKAMIRFDMSEFQEKHTIARLIGSPPGYIGYE 591
Query: 484 LSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEK 600
S T + + +++ DE + +D N L +++++
Sbjct: 592 ESGELTEAVRRKPYAVLLFDELEKAHHDITNLLLQVLDE 630
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 28.3 bits (60), Expect = 1.4
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 334 LLFYGPPGTGKTSTILACAKQ 396
++ YGPPGTGKT A A +
Sbjct: 216 IMLYGPPGTGKTLCARAVANR 236
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 27.9 bits (59), Expect = 1.8
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 334 LLFYGPPGTGKTSTILACAKQ 396
+L +GPPGTGKT A A +
Sbjct: 415 MLLFGPPGTGKTMLARAVATE 435
>SPAC23C11.13c |hpt1||xanthine phosphoribosyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 206
Score = 27.5 bits (58), Expect = 2.4
Identities = 14/54 (25%), Positives = 24/54 (44%)
Frame = +1
Query: 457 GIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEKYTENVR 618
G+ + R Q L F++ + G ++I+DE D ALR + E +
Sbjct: 82 GLEVKRTQWLDFSTLGMVDLVGKNILIVDEVDDTRTTLHYALRELQRDVAEQAK 135
>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 27.5 bits (58), Expect = 2.4
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 334 LLFYGPPGTGKTSTILACAKQ 396
+L YGPPGTGK+ A A +
Sbjct: 165 ILLYGPPGTGKSYLAKAVATE 185
>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
Upf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 27.5 bits (58), Expect = 2.4
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +1
Query: 328 PHLLFYGPPGTGKTSTILACAKQMYTPQ 411
P L GPPGTGKT T + + T Q
Sbjct: 408 PLSLIQGPPGTGKTVTSASVVYHLATMQ 435
>SPAC227.14 |||nicotinamide riboside kinase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 235
Score = 27.1 bits (57), Expect = 3.2
Identities = 16/62 (25%), Positives = 33/62 (53%)
Frame = +1
Query: 265 DLVSHDDIIKTINQFMKENQLPHLLFYGPPGTGKTSTILACAKQMYTPQQFSSMVLELNA 444
D+ S+D++ + +K Q + G PG+GK ST+ A + + ++F S ++++
Sbjct: 9 DVSSYDELYNRAVELLKHQQRVLIGLAGGPGSGK-STLCAILAKAWN-ERFGSEIVKIIP 66
Query: 445 SD 450
D
Sbjct: 67 MD 68
>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 905
Score = 27.1 bits (57), Expect = 3.2
Identities = 14/54 (25%), Positives = 26/54 (48%)
Frame = +1
Query: 238 EKYRPKRLDDLVSHDDIIKTINQFMKENQLPHLLFYGPPGTGKTSTILACAKQM 399
E R +LD ++ +D I+ + + + + G PG GKTS A+++
Sbjct: 173 ELARNGQLDPVIGREDEIRRTIRVLSRRTKNNPVLIGEPGVGKTSIAEGLARRI 226
Score = 25.4 bits (53), Expect = 9.7
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = +1
Query: 337 LFYGPPGTGKTSTILACAKQMY 402
LF GP GTGKT A A M+
Sbjct: 618 LFCGPSGTGKTLLTKALASFMF 639
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 26.6 bits (56), Expect = 4.2
Identities = 16/62 (25%), Positives = 30/62 (48%)
Frame = +1
Query: 487 SFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQ 666
S R + P+L+ L E++ + A +ALR II + + + +I + K + A
Sbjct: 2015 SILGDRAVDDVLPQLLKLLESENQSEQALSALREIISRRSSTIFPVLIPTLIKKPVSAFN 2074
Query: 667 SR 672
+R
Sbjct: 2075 AR 2076
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 26.6 bits (56), Expect = 4.2
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 325 LPHLLFYGPPGTGKTSTILACAKQ 396
L +L G PG GKTS I A A++
Sbjct: 1559 LKPILLEGSPGVGKTSLITALARE 1582
>SPAC56E4.03 |||aromatic aminotransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 26.6 bits (56), Expect = 4.2
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Frame = +1
Query: 274 SHDDIIKTINQFMKENQLPHLLFYGPPGTGKTSTILAC--AKQMYT-PQQFSSMVLE 435
S DDI+ + + PH+L+ P G T + L+ KQ+YT Q+ ++LE
Sbjct: 188 SMDDILTNWDATSYGSPKPHVLYTIPTGQNPTGSTLSVERRKQIYTLAQKHDIIILE 244
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 26.6 bits (56), Expect = 4.2
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = +1
Query: 211 IKTLFLRRVEKYRPKRLDDLVSHDDIIKTINQFMKENQLPHL--LFYGPPGTGKTSTILA 384
IK L + + LDD + + D+ + + + +L GP GTGKT T+ A
Sbjct: 1843 IKMFSLEFIYAFEYSELDDPIVYTDLTRNCFSVLLHSIASNLGGSPIGPAGTGKTETVKA 1902
>SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 465
Score = 25.8 bits (54), Expect = 7.4
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +1
Query: 334 LLFYGPPGTGKTSTILACAKQMYTPQQFSSM 426
+L GPP TGKT+ + A+ + + F ++
Sbjct: 68 ILMAGPPSTGKTAIAMGMAQSLGSDTPFVTL 98
>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1958
Score = 25.4 bits (53), Expect = 9.7
Identities = 17/71 (23%), Positives = 35/71 (49%)
Frame = +1
Query: 562 NDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVT 741
+D+Q + I+++ E + FC G+++P+L S T+ + D++ P L +
Sbjct: 1556 HDSQKRIGGSIQEF-EFISFCQQKRIFGRLLPSLDSPVTK----SITDDRVEPLLVKDTF 1610
Query: 742 TEGVKMSEGGM 774
E + S G+
Sbjct: 1611 REFAEASVSGL 1621
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,165,740
Number of Sequences: 5004
Number of extensions: 62024
Number of successful extensions: 229
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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