Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_F_F01
(817 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_26897| Best HMM Match : AAA (HMM E-Value=4.2e-12) 268 5e-72
SB_48733| Best HMM Match : RVT_1 (HMM E-Value=5.2e-05) 79 3e-15
SB_40348| Best HMM Match : No HMM Matches (HMM E-Value=.) 72 6e-13
SB_10418| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_9476| Best HMM Match : RuvB_N (HMM E-Value=0.35) 38 0.010
SB_30760| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.039
SB_34154| Best HMM Match : UvrD-helicase (HMM E-Value=0.064) 36 0.052
SB_46732| Best HMM Match : AAA (HMM E-Value=0.044) 34 0.16
SB_3115| Best HMM Match : AAA (HMM E-Value=0) 34 0.16
SB_49367| Best HMM Match : AAA (HMM E-Value=0) 33 0.28
SB_59437| Best HMM Match : AAA (HMM E-Value=7.4e-08) 32 0.48
SB_23422| Best HMM Match : Propeptide_C1 (HMM E-Value=7.2) 32 0.64
SB_45627| Best HMM Match : AAA (HMM E-Value=0) 32 0.64
SB_38494| Best HMM Match : Phage_integrase (HMM E-Value=1.4) 32 0.64
SB_31892| Best HMM Match : AAA (HMM E-Value=6.2e-25) 31 0.84
SB_48561| Best HMM Match : AAA (HMM E-Value=0) 31 1.1
SB_45519| Best HMM Match : RNB (HMM E-Value=1.6e-35) 31 1.1
SB_7424| Best HMM Match : AAA (HMM E-Value=0) 31 1.5
SB_51198| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_33442| Best HMM Match : AAA (HMM E-Value=0) 30 2.6
SB_55690| Best HMM Match : AAA (HMM E-Value=0) 30 2.6
SB_59669| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 2.7
SB_20359| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_6010| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_8110| Best HMM Match : AAA (HMM E-Value=0.0032) 29 6.0
SB_5618| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.0
SB_2610| Best HMM Match : F5_F8_type_C (HMM E-Value=4.5e-29) 29 6.0
SB_40956| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.0
SB_34097| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.0
SB_17427| Best HMM Match : ResIII (HMM E-Value=0.6) 29 6.0
SB_12278| Best HMM Match : PAN (HMM E-Value=0.044) 29 6.0
SB_8534| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.0
SB_47951| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_43853| Best HMM Match : AAA_5 (HMM E-Value=0) 28 7.9
SB_35704| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_16306| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_3919| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
>SB_26897| Best HMM Match : AAA (HMM E-Value=4.2e-12)
Length = 230
Score = 268 bits (656), Expect = 5e-72
Identities = 125/171 (73%), Positives = 147/171 (85%)
Frame = +1
Query: 304 QFMKENQLPHLLFYGPPGTGKTSTILACAKQMYTPQQFSSMVLELNASDDRGIGIVRGQI 483
+F+ E +LPHLLFYGPPGTGKTSTILA AKQ+Y +QF SMVLELNASDDRGIGIVRG I
Sbjct: 3 RFINEERLPHLLFYGPPGTGKTSTILAVAKQLYPDKQFGSMVLELNASDDRGIGIVRGDI 62
Query: 484 LSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPAL 663
LSFASTRTIFK+G KL+ILDEADAMT DAQNALRR++EK+TEN RFC+ICNYL KIIPAL
Sbjct: 63 LSFASTRTIFKSGFKLVILDEADAMTQDAQNALRRVMEKFTENTRFCLICNYLTKIIPAL 122
Query: 664 QSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKALLTWSGGDMXKV 816
QSRCTRFRF PL DQ++PRL+ ++ +E V +++ G K+LL + GDM KV
Sbjct: 123 QSRCTRFRFGPLSVDQMLPRLEHVIESERVNVTDDGRKSLLRLAQGDMRKV 173
>SB_48733| Best HMM Match : RVT_1 (HMM E-Value=5.2e-05)
Length = 1104
Score = 79.4 bits (187), Expect = 3e-15
Identities = 50/129 (38%), Positives = 72/129 (55%), Gaps = 1/129 (0%)
Frame = +1
Query: 175 TKNHNSIYFNTTIKTLFLRRVEKYRPKRLDDLVSHDDIIKTINQFMKENQLPHLLFYGPP 354
T H+ N T+ RVEKYRP +L ++V +++ + + GPP
Sbjct: 828 TALHSKGKDNKTLDLFVSSRVEKYRPTKLHEIVGNEETVSRLE--------------GPP 873
Query: 355 GTGKTSTILACAKQMYTPQQFSSMVLELNASDDRGIGIVRGQILSFASTR-TIFKAGPKL 531
GTGKT++IL A+ + VLELNAS+DRGI +VR +I FA + T+ K K+
Sbjct: 874 GTGKTTSILCLARALLGVS-LKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKI 932
Query: 532 IILDEADAM 558
IILDEAD++
Sbjct: 933 IILDEADSL 941
>SB_40348| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 323
Score = 71.7 bits (168), Expect = 6e-13
Identities = 35/96 (36%), Positives = 54/96 (56%)
Frame = +1
Query: 526 KLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQ 705
K+++L E D +T DAQ+ALRR +EKYT R + CN K+IPA++SRC R
Sbjct: 47 KVVVLTEVDRLTKDAQHALRRTMEKYTSTCRLILCCNSTSKVIPAIRSRCLGVRIPAPSV 106
Query: 706 DQIVPRLQEIVTTEGVKMSEGGMKALLTWSGGDMXK 813
++I LQ + EG+ + + + SG ++ K
Sbjct: 107 EEICQILQFVCKKEGLTIPSELSRRIAEKSGRNLRK 142
>SB_10418| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 477
Score = 44.0 bits (99), Expect = 1e-04
Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 6/99 (6%)
Frame = +1
Query: 337 LFYGPPGTGKTSTILACAKQMYTPQQFSSMVLELNASDDRGIGIVRGQILSFASTRTIFK 516
L GPPG GKT+ A Q V+E+NASDDR + + R +I +++
Sbjct: 384 LLCGPPGLGKTTLAHVIA------QHAGYNVVEMNASDDRAVEVFRQKIEVATQMKSVLG 437
Query: 517 AG--PKLIILDEADAMTNDAQN----ALRRIIEKYTENV 615
A P +++DE D A N R ++ T+N+
Sbjct: 438 ANERPNCLVIDEIDGAPTPANNVSFLTYRHTTDRQTDNM 476
Score = 29.1 bits (62), Expect = 4.5
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +1
Query: 235 VEKYRPKRLDDLVSHDDIIKTINQFMK 315
VEKY P+ +L+S D I +T+ Q++K
Sbjct: 297 VEKYSPRHFTELLSDDAINRTLLQWLK 323
>SB_9476| Best HMM Match : RuvB_N (HMM E-Value=0.35)
Length = 848
Score = 37.9 bits (84), Expect = 0.010
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Frame = +1
Query: 199 FNTTIKTLFLRRVEKYRPKRLDDLVSHDDIIKT---INQFMKENQLPHLLFYGPPGTGKT 369
F K F+ E+ RP L+D V + ++ + ++ N++P ++ +GPPG T
Sbjct: 302 FTRKTKVNFVPLAEQMRPTSLEDYVGQEQVLGNSCLLRTLLEANEVPSMVLWGPPGDSPT 361
Query: 370 STIL 381
I+
Sbjct: 362 VAII 365
>SB_30760| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1868
Score = 35.9 bits (79), Expect = 0.039
Identities = 19/66 (28%), Positives = 36/66 (54%)
Frame = +1
Query: 250 PKRLDDLVSHDDIIKTINQFMKENQLPHLLFYGPPGTGKTSTILACAKQMYTPQQFSSMV 429
P+ + + V DD++K I + +KE + +L PP GK+ST++ + M + + +
Sbjct: 387 PEEIPNFVGRDDLVKKIVK-LKEEKWKLILLVAPPFNGKSSTVI-MSGHMLQKKGYPVLY 444
Query: 430 LELNAS 447
LNA+
Sbjct: 445 FHLNAA 450
>SB_34154| Best HMM Match : UvrD-helicase (HMM E-Value=0.064)
Length = 1064
Score = 35.5 bits (78), Expect = 0.052
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Frame = +1
Query: 253 KRLDDLVSHD--DIIKTINQFMKENQLPH-LLFYGPPGTGKTSTILACAKQM 399
KRL D+ D + + + +K PH L +GPPGTGKT T++ KQ+
Sbjct: 524 KRLFDVKLEDNQEQRQAVVSIVKGTSRPHPYLIFGPPGTGKTITVVESIKQV 575
>SB_46732| Best HMM Match : AAA (HMM E-Value=0.044)
Length = 430
Score = 33.9 bits (74), Expect = 0.16
Identities = 15/27 (55%), Positives = 17/27 (62%)
Frame = +1
Query: 289 IKTINQFMKENQLPHLLFYGPPGTGKT 369
I T N + +LLFYGPPGTGKT
Sbjct: 317 IATSNTKRNKGMYRNLLFYGPPGTGKT 343
>SB_3115| Best HMM Match : AAA (HMM E-Value=0)
Length = 913
Score = 33.9 bits (74), Expect = 0.16
Identities = 27/74 (36%), Positives = 34/74 (45%)
Frame = +1
Query: 337 LFYGPPGTGKTSTILACAKQMYTPQQFSSMVLELNASDDRGIGIVRGQILSFASTRTIFK 516
L GPPGTGKT A A + P F SM G+G R + L F R K
Sbjct: 162 LLVGPPGTGKTLLAKAVATEADVP--FLSMAGSDFVEMFAGVGSARVRDL-FTRAR---K 215
Query: 517 AGPKLIILDEADAM 558
P ++ +DE DA+
Sbjct: 216 LAPCIVYIDEVDAI 229
>SB_49367| Best HMM Match : AAA (HMM E-Value=0)
Length = 976
Score = 33.1 bits (72), Expect = 0.28
Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 1/98 (1%)
Frame = +1
Query: 337 LFYGPPGTGKTSTILACAKQMYTPQQFSSMVLELNASD-DRGIGIVRGQILSFASTRTIF 513
L +GPPG GKT A A ++ P L+L A++ G+ + + T +
Sbjct: 714 LLHGPPGCGKTLLAHAIAGELEMP------FLKLAATEIVSGVSGESEEKVRELFTSAVA 767
Query: 514 KAGPKLIILDEADAMTNDAQNALRRIIEKYTENVRFCI 627
+A P ++ LDE DA+T +NA + + + + C+
Sbjct: 768 QA-PCILFLDEIDAITPKRENASKDMERRIVSQLLSCM 804
>SB_59437| Best HMM Match : AAA (HMM E-Value=7.4e-08)
Length = 568
Score = 32.3 bits (70), Expect = 0.48
Identities = 41/145 (28%), Positives = 66/145 (45%), Gaps = 19/145 (13%)
Frame = +1
Query: 337 LFYGPPGTGKTST-ILACAKQMYTPQQFSSMVLELNASDDRG---IGIVRGQILS----- 489
L GPPG GKT+T L C Q+ +E+NASD R + V + LS
Sbjct: 275 LLSGPPGVGKTTTATLVC-------QELGYSYVEMNASDARSKKTLEQVVSESLSNKSMD 327
Query: 490 ------FASTRTIFKAGPK-LIILDEADAMT-NDAQNALRRIIEKY-TENVRFCIICN-Y 639
AS K+G K ++++DE D M ++ + ++ +I T + +CN
Sbjct: 328 AFVGSNCASKGVAAKSGLKHVLLMDEVDGMAGSEDRGGMQELISLIKTSKIPIICMCNDR 387
Query: 640 LGKIIPALQSRCTRFRFAPLKQDQI 714
+ I +L + C RF+ + +QI
Sbjct: 388 NSQKIRSLANYCFDLRFSRPRVEQI 412
>SB_23422| Best HMM Match : Propeptide_C1 (HMM E-Value=7.2)
Length = 628
Score = 31.9 bits (69), Expect = 0.64
Identities = 14/25 (56%), Positives = 19/25 (76%)
Frame = +1
Query: 328 PHLLFYGPPGTGKTSTILACAKQMY 402
P+LLF GPPGTGKT T++ Q++
Sbjct: 593 PYLLF-GPPGTGKTVTLVEAMLQVH 616
>SB_45627| Best HMM Match : AAA (HMM E-Value=0)
Length = 628
Score = 31.9 bits (69), Expect = 0.64
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Frame = +1
Query: 253 KRLDDLVSHDDIIKTINQFMKENQLPH--LLFYGPPGTGKTSTILACAKQ 396
+ L +LV + ++ ++F+K P +LFYGPPG GKT A A +
Sbjct: 320 RELQELVQYP--VEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE 367
>SB_38494| Best HMM Match : Phage_integrase (HMM E-Value=1.4)
Length = 192
Score = 31.9 bits (69), Expect = 0.64
Identities = 21/76 (27%), Positives = 34/76 (44%)
Frame = +1
Query: 586 RIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSE 765
R+I+ + V II N L + +L RC R + + + VT GV S+
Sbjct: 100 RVIDLHNYLVSDYIITNKLRTLCGSLSLRCGRLMALAVVALHVARHVNTNVTERGVNTSK 159
Query: 766 GGMKALLTWSGGDMXK 813
MKA+L G ++ +
Sbjct: 160 ADMKAILHNYGAELSE 175
>SB_31892| Best HMM Match : AAA (HMM E-Value=6.2e-25)
Length = 420
Score = 31.5 bits (68), Expect = 0.84
Identities = 33/105 (31%), Positives = 50/105 (47%), Gaps = 3/105 (2%)
Frame = +1
Query: 337 LFYGPPGTGKTSTILACAKQMYTPQQFSSMVLELNASDDRGIGIVR-GQILSFASTRTIF 513
L YGPPG GK+S I A A ++ +S V+ L+ DR + R ++S A ++I
Sbjct: 226 LLYGPPGCGKSSFIQALAGEL----DYSICVMNLS---DRSLTDDRLNHLMSVAPQQSI- 277
Query: 514 KAGPKLIILDEADA--MTNDAQNALRRIIEKYTENVRFCIICNYL 642
I+L++ DA + D NA + Y V F + N L
Sbjct: 278 ------ILLEDIDAAFVKRDETNAANKGGGMYQNRVTFSGLLNTL 316
>SB_48561| Best HMM Match : AAA (HMM E-Value=0)
Length = 2021
Score = 31.1 bits (67), Expect = 1.1
Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
Frame = +1
Query: 334 LLFYGPPGTGKTSTILACAKQMYTPQQFSSMVLELNASD-DRGIGIVRGQI-LSFASTRT 507
+LF+GPPGTGKT A A + + S + A + +G Q+ L F
Sbjct: 921 VLFFGPPGTGKTLVARALANECSQGDKKVSFFMRKGADCLSKWVGESERQLRLLFDQA-- 978
Query: 508 IFKAGPKLIILDEADAM 558
+ P +I DE D +
Sbjct: 979 -YAMRPSIIFFDEIDGL 994
>SB_45519| Best HMM Match : RNB (HMM E-Value=1.6e-35)
Length = 2748
Score = 31.1 bits (67), Expect = 1.1
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +1
Query: 328 PHLLFYGPPGTGKTSTILACAKQM 399
P LL +GP GTGKT TI K++
Sbjct: 375 PPLLIFGPFGTGKTRTIAEAVKEL 398
>SB_7424| Best HMM Match : AAA (HMM E-Value=0)
Length = 294
Score = 30.7 bits (66), Expect = 1.5
Identities = 27/71 (38%), Positives = 34/71 (47%)
Frame = +1
Query: 346 GPPGTGKTSTILACAKQMYTPQQFSSMVLELNASDDRGIGIVRGQILSFASTRTIFKAGP 525
GPPGTGKT A A + P F S+ G+G R + L FA R K P
Sbjct: 88 GPPGTGKTLLAKAVAGEAGVP--FLSISGSEFLEMFVGVGPARVRDL-FAQAR---KNAP 141
Query: 526 KLIILDEADAM 558
+I +DE DA+
Sbjct: 142 CIIFIDEIDAV 152
>SB_51198| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1627
Score = 30.3 bits (65), Expect = 2.0
Identities = 14/59 (23%), Positives = 31/59 (52%)
Frame = +1
Query: 256 RLDDLVSHDDIIKTINQFMKENQLPHLLFYGPPGTGKTSTILACAKQMYTPQQFSSMVL 432
+ ++ +DI++ I ++ + L+ YG G GKTS + AK + + ++ +V+
Sbjct: 360 KCENFHGREDILEKIRTYISGSGQKPLVLYGDSGCGKTSLVAMTAKLVPSWTEYEPVVV 418
>SB_33442| Best HMM Match : AAA (HMM E-Value=0)
Length = 369
Score = 29.9 bits (64), Expect = 2.6
Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
Frame = +1
Query: 334 LLFYGPPGTGKTSTILACAKQMYTPQQFSSMVLELNASDDRGIGIVRGQILSFASTRTIF 513
+L YGPPG GK T+LA A +T F +V S+ + G + R
Sbjct: 201 VLLYGPPGCGK--TMLAKAVAHHTTAAFIRVV----GSEFVQKYLGEGPRMVRDVFRLAK 254
Query: 514 KAGPKLIILDEADAMTN---DAQNALRRIIEK 600
+ P +I +DE DA+ DAQ R +++
Sbjct: 255 ENAPAIIFIDEIDAIATKRFDAQTGADREVQR 286
>SB_55690| Best HMM Match : AAA (HMM E-Value=0)
Length = 1031
Score = 29.9 bits (64), Expect = 2.6
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = +1
Query: 334 LLFYGPPGTGKTSTILACAKQ 396
LL YGPPGTGKT AK+
Sbjct: 704 LLLYGPPGTGKTLLAGVVAKE 724
>SB_59669| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3511
Score = 26.2 bits (55), Expect(2) = 2.7
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 334 LLFYGPPGTGKTSTILACAKQMYTPQQFSSMVLELNA 444
+L GP GTGKTS + Q P+ + +V+ ++A
Sbjct: 1757 VLLTGPVGTGKTS-VAQKVLQKLDPKTYGLLVINMSA 1792
Score = 21.8 bits (44), Expect(2) = 2.7
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +1
Query: 529 LIILDEADAMTNDAQNALRRIIEKYTENV 615
L+I A +ND Q + +EK T+ V
Sbjct: 1786 LVINMSAQTSSNDVQEIIESKVEKRTKGV 1814
>SB_20359| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4700
Score = 29.1 bits (62), Expect = 4.5
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = +1
Query: 268 LVSHDDIIKTINQFMKENQLPHLLFY-GPPGTGKTSTILACAKQMYTPQQFSSMVLELN 441
L D I I Q + + H +F GP GTGKT I + K Y Q+ M+ +LN
Sbjct: 2485 LQPEDSFILKIVQLEELLAVRHSVFVLGPAGTGKTQVIRSLNK-TYMNQKRKPMMFDLN 2542
>SB_6010| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2202
Score = 29.1 bits (62), Expect = 4.5
Identities = 18/51 (35%), Positives = 30/51 (58%)
Frame = +1
Query: 253 KRLDDLVSHDDIIKTINQFMKENQLPHLLFYGPPGTGKTSTILACAKQMYT 405
KRL+D S +I+ I + +E P ++ +GP GTGK+ T+ +Q+ T
Sbjct: 299 KRLND--SQKAVIRAIAK--REPPSPPVVVFGPFGTGKSFTLNQGVRQLLT 345
>SB_8110| Best HMM Match : AAA (HMM E-Value=0.0032)
Length = 1199
Score = 28.7 bits (61), Expect = 6.0
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +1
Query: 334 LLFYGPPGTGKTSTILACAKQM 399
+L GP G GKT++I ACA ++
Sbjct: 641 MLVVGPRGAGKTASIYACAGEL 662
>SB_5618| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 801
Score = 28.7 bits (61), Expect = 6.0
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +1
Query: 271 VSHDDIIKTINQFMKENQLPHLLFYGPPGTGKT 369
V D+++ + QF+KEN LP L TG T
Sbjct: 5 VESADVVRLVQQFLKENNLPRTLATLQEETGIT 37
>SB_2610| Best HMM Match : F5_F8_type_C (HMM E-Value=4.5e-29)
Length = 334
Score = 28.7 bits (61), Expect = 6.0
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +3
Query: 705 RSNCAEITRNCHNGRCKNVRGRNEGASH 788
+ NCA I + NGRCK ++ + H
Sbjct: 30 KENCASINYDMKNGRCKRMKATHANLPH 57
>SB_40956| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1086
Score = 28.7 bits (61), Expect = 6.0
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +1
Query: 334 LLFYGPPGTGKTSTILACAKQ 396
+L YGPPGTGKT A A +
Sbjct: 847 VLLYGPPGTGKTLMAKAVATE 867
>SB_34097| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 253
Score = 28.7 bits (61), Expect = 6.0
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +1
Query: 334 LLFYGPPGTGKTSTILACAKQM 399
+L GP G GKT++I ACA ++
Sbjct: 31 MLVVGPRGAGKTASIYACAGEL 52
>SB_17427| Best HMM Match : ResIII (HMM E-Value=0.6)
Length = 486
Score = 28.7 bits (61), Expect = 6.0
Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
Frame = +1
Query: 262 DDLVSHDDIIKTINQFMKEN---QLPHLLFY-GPPGTGKTSTILACAKQM 399
D+++ D IK + +F++++ + P L+ G PGTGKT+ + + M
Sbjct: 210 DNILCRDTEIKAVTKFLEKHVQKKKPGSLYISGAPGTGKTACLTMVIRDM 259
>SB_12278| Best HMM Match : PAN (HMM E-Value=0.044)
Length = 97
Score = 28.7 bits (61), Expect = 6.0
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +3
Query: 705 RSNCAEITRNCHNGRCKNVRGRNEGASH 788
+ NCA I + NGRCK ++ + H
Sbjct: 52 KENCASINYDMKNGRCKRMKATHANLPH 79
>SB_8534| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 926
Score = 28.7 bits (61), Expect = 6.0
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Frame = +2
Query: 47 FNQVSCTYILVSXLKTL--LKKQYXCWGNRPEFA 142
+NQ Y+L S LK +K Y WGN+P A
Sbjct: 298 YNQFRWKYVLYSTLKRRHRVKLSYSPWGNKPAVA 331
>SB_47951| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 437
Score = 28.3 bits (60), Expect = 7.9
Identities = 9/15 (60%), Positives = 14/15 (93%)
Frame = +1
Query: 337 LFYGPPGTGKTSTIL 381
+ +GPPGTGKT+T++
Sbjct: 254 VIHGPPGTGKTTTVV 268
>SB_43853| Best HMM Match : AAA_5 (HMM E-Value=0)
Length = 2065
Score = 28.3 bits (60), Expect = 7.9
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +1
Query: 304 QFMKENQLPH-LLFYGPPGTGKTSTILACAK 393
+ ++ QLP +L G PG GKTS + A AK
Sbjct: 1609 RILRALQLPRPILLEGSPGVGKTSLVSAIAK 1639
>SB_35704| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 256
Score = 28.3 bits (60), Expect = 7.9
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Frame = +1
Query: 334 LLFYGPPGTGKTSTILACAKQMYTPQQFSSMVLELNASDDRGIGIVRGQILS-FASTRTI 510
+L G PGTGKT A A + P F S + D+ +G+ ++ + FA+ +
Sbjct: 167 VLLIGSPGTGKTLLAKAVAGEAGVPFFFCSG----SEFDEMFVGVGAARVRNLFAAAK-- 220
Query: 511 FKAGPKLIILDEADAM 558
+ P ++ +DE DA+
Sbjct: 221 -EHAPCIVFVDELDAI 235
>SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1170
Score = 28.3 bits (60), Expect = 7.9
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +1
Query: 475 GQILSFASTRTIFKAGPKLIILDEADAMTN-DAQNALRRIIE 597
G++ F + G + +ILDEAD M + + A+RRI+E
Sbjct: 847 GRLTDFIEKGKVSLKGLQFLILDEADRMLDMGFEPAIRRIVE 888
>SB_16306| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 958
Score = 28.3 bits (60), Expect = 7.9
Identities = 15/49 (30%), Positives = 28/49 (57%)
Frame = +1
Query: 253 KRLDDLVSHDDIIKTINQFMKENQLPHLLFYGPPGTGKTSTILACAKQM 399
K + ++ +I+KTIN ++ ++ L GP G+GKT+ + A +M
Sbjct: 13 KNIGVSINGREILKTINGKVRPGEM--LALMGPSGSGKTTLLNVLAGRM 59
>SB_3919| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 442
Score = 28.3 bits (60), Expect = 7.9
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = +1
Query: 334 LLFYGPPGTGKTSTILACA 390
+L YGPPGTGKT A A
Sbjct: 214 VLLYGPPGTGKTLLARAVA 232
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,814,089
Number of Sequences: 59808
Number of extensions: 452115
Number of successful extensions: 1311
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 1213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1306
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2275631710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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