Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_F_E24
(493 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P42677 Cluster: 40S ribosomal protein S27; n=74; Bilate... 143 2e-33
UniRef50_Q71UM5 Cluster: 40S ribosomal protein S27-like protein;... 143 2e-33
UniRef50_Q7RVN2 Cluster: 40S ribosomal protein S27; n=17; Fungi/... 132 3e-30
UniRef50_UPI00015B4FAB Cluster: PREDICTED: similar to myotubular... 128 5e-29
UniRef50_Q9AW40 Cluster: 40S ribosomal protein S27; n=1; Guillar... 88 9e-17
UniRef50_UPI00005A14C9 Cluster: PREDICTED: similar to ribosomal ... 81 1e-14
UniRef50_Q7R0I3 Cluster: Ribosomal protein S27; n=1; Giardia lam... 80 3e-14
UniRef50_Q6QI38 Cluster: LRRGT00170; n=2; Rattus norvegicus|Rep:... 75 7e-13
UniRef50_Q6QI46 Cluster: LRRGT00162; n=1; Rattus norvegicus|Rep:... 69 4e-11
UniRef50_Q3LW62 Cluster: Ribosomal protein S27; n=1; Bigelowiell... 66 3e-10
UniRef50_A2DGQ3 Cluster: Ribosomal protein S27, putative; n=4; T... 66 5e-10
UniRef50_Q8SS34 Cluster: 40S RIBOSOMAL PROTEIN S27; n=1; Encepha... 58 1e-07
UniRef50_Q9YF01 Cluster: 30S ribosomal protein S27e; n=4; Thermo... 57 2e-07
UniRef50_Q22CK0 Cluster: Putative uncharacterized protein; n=1; ... 55 7e-07
UniRef50_Q8ZTY4 Cluster: 30S ribosomal protein S27e; n=10; Archa... 55 7e-07
UniRef50_Q5T4L4 Cluster: Ribosomal protein S27; n=30; Fungi/Meta... 51 1e-05
UniRef50_A0RY94 Cluster: Ribosomal protein S27E; n=1; Cenarchaeu... 47 2e-04
UniRef50_Q9HRT7 Cluster: 30S ribosomal protein S27e; n=7; Euryar... 47 3e-04
UniRef50_Q8U474 Cluster: 30S ribosomal protein S27e; n=9; Euryar... 46 5e-04
UniRef50_Q8TY87 Cluster: 30S ribosomal protein S27e; n=13; Archa... 46 5e-04
UniRef50_A7DPS1 Cluster: Ribosomal protein S27E; n=1; Candidatus... 46 6e-04
UniRef50_UPI00006C13E4 Cluster: PREDICTED: similar to ribosomal ... 44 0.001
UniRef50_Q18KR1 Cluster: Ribosomal protein S27.eR; n=3; Halobact... 42 0.010
UniRef50_Q9HIX2 Cluster: 30S ribosomal protein S27e; n=4; Thermo... 39 0.053
UniRef50_Q1PS48 Cluster: Cxpwmw06; n=1; Periplaneta americana|Re... 38 0.16
UniRef50_Q8TGN0 Cluster: Uncharacterized protein YKL156C-A; n=1;... 36 0.65
UniRef50_A7PBG8 Cluster: Chromosome chr16 scaffold_10, whole gen... 34 1.5
UniRef50_Q6QI40 Cluster: LRRGT00168; n=1; Rattus norvegicus|Rep:... 33 2.6
>UniRef50_P42677 Cluster: 40S ribosomal protein S27; n=74;
Bilateria|Rep: 40S ribosomal protein S27 - Homo sapiens
(Human)
Length = 84
Score = 143 bits (347), Expect = 2e-33
Identities = 63/75 (84%), Positives = 67/75 (89%), Gaps = 1/75 (1%)
Frame = +1
Query: 64 PLPSE-RRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILCQPTGG 240
P P E +RKHK KRLV PNSYFMDVKCPGCYKITTVFSHAQ VV+C GCST+LCQPTGG
Sbjct: 10 PSPEEEKRKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGG 69
Query: 241 RARLTEGCSFRRKQH 285
+ARLTEGCSFRRKQH
Sbjct: 70 KARLTEGCSFRRKQH 84
>UniRef50_Q71UM5 Cluster: 40S ribosomal protein S27-like protein;
n=100; Eukaryota|Rep: 40S ribosomal protein S27-like
protein - Homo sapiens (Human)
Length = 84
Score = 143 bits (346), Expect = 2e-33
Identities = 61/73 (83%), Positives = 66/73 (90%)
Frame = +1
Query: 67 LPSERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILCQPTGGRA 246
L E++KHK KRLV PNSYFMDVKCPGCYKITTVFSHAQ VV+C GCST+LCQPTGG+A
Sbjct: 12 LEEEKKKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKA 71
Query: 247 RLTEGCSFRRKQH 285
RLTEGCSFRRKQH
Sbjct: 72 RLTEGCSFRRKQH 84
>UniRef50_Q7RVN2 Cluster: 40S ribosomal protein S27; n=17;
Fungi/Metazoa group|Rep: 40S ribosomal protein S27 -
Neurospora crassa
Length = 82
Score = 132 bits (320), Expect = 3e-30
Identities = 58/73 (79%), Positives = 64/73 (87%), Gaps = 1/73 (1%)
Frame = +1
Query: 64 PLP-SERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILCQPTGG 240
P P SE RKHKLK LVP P S+FMDVKCPGC+ ITTVFSHAQ VV+C GC+T+LCQPTGG
Sbjct: 10 PSPASEARKHKLKTLVPAPRSFFMDVKCPGCFTITTVFSHAQTVVICQGCTTVLCQPTGG 69
Query: 241 RARLTEGCSFRRK 279
+ARLTEGCSFRRK
Sbjct: 70 KARLTEGCSFRRK 82
>UniRef50_UPI00015B4FAB Cluster: PREDICTED: similar to myotubularin;
n=2; Apocrita|Rep: PREDICTED: similar to myotubularin -
Nasonia vitripennis
Length = 2064
Score = 128 bits (310), Expect = 5e-29
Identities = 57/73 (78%), Positives = 62/73 (84%), Gaps = 1/73 (1%)
Frame = +1
Query: 64 PLPSE-RRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILCQPTGG 240
P P+E +RKHKLKRLV PNSYFMDVKCPGCY I T+FSHAQR V C GC TILC PTGG
Sbjct: 1989 PSPAEEKRKHKLKRLVQKPNSYFMDVKCPGCYAIKTIFSHAQRPVECDGCRTILCTPTGG 2048
Query: 241 RARLTEGCSFRRK 279
+ARLTEGCSFR+K
Sbjct: 2049 KARLTEGCSFRKK 2061
>UniRef50_Q9AW40 Cluster: 40S ribosomal protein S27; n=1; Guillardia
theta|Rep: 40S ribosomal protein S27 - Guillardia theta
(Cryptomonas phi)
Length = 81
Score = 88.2 bits (209), Expect = 9e-17
Identities = 34/67 (50%), Positives = 47/67 (70%)
Frame = +1
Query: 76 ERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILCQPTGGRARLT 255
E+ KHK KR++P+PNSYF+++ C C +FSH+Q +VC C+ LC PTGG+ARL
Sbjct: 14 EKMKHKKKRIIPNPNSYFINIICKNCKNKNIIFSHSQTKIVCKNCALNLCYPTGGKARLI 73
Query: 256 EGCSFRR 276
+GC F R
Sbjct: 74 KGCKFSR 80
>UniRef50_UPI00005A14C9 Cluster: PREDICTED: similar to ribosomal
protein S27; n=1; Canis lupus familiaris|Rep: PREDICTED:
similar to ribosomal protein S27 - Canis familiaris
Length = 115
Score = 81.4 bits (192), Expect = 1e-14
Identities = 37/54 (68%), Positives = 42/54 (77%)
Frame = +1
Query: 64 PLPSERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILC 225
P P ++RKHK K LV PNSYFMD+KCPGCYKITTVFSHAQ VV+ A T+ C
Sbjct: 10 PSPEKKRKHKKKHLVQSPNSYFMDMKCPGCYKITTVFSHAQTVVLKA--QTLRC 61
>UniRef50_Q7R0I3 Cluster: Ribosomal protein S27; n=1; Giardia
lamblia ATCC 50803|Rep: Ribosomal protein S27 - Giardia
lamblia ATCC 50803
Length = 81
Score = 79.8 bits (188), Expect = 3e-14
Identities = 33/60 (55%), Positives = 42/60 (70%)
Frame = +1
Query: 76 ERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILCQPTGGRARLT 255
E+RKHKLKRLV PNSYF+++KC GC I V+SHA V C GC++ + PTGG+ T
Sbjct: 13 EQRKHKLKRLVQGPNSYFLEIKCAGCQDIVVVYSHANTPVFCPGCTSQISIPTGGKCAFT 72
>UniRef50_Q6QI38 Cluster: LRRGT00170; n=2; Rattus norvegicus|Rep:
LRRGT00170 - Rattus norvegicus (Rat)
Length = 496
Score = 75.4 bits (177), Expect = 7e-13
Identities = 32/53 (60%), Positives = 38/53 (71%)
Frame = +1
Query: 76 ERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILCQPT 234
E+RKHK K LV P+SYFMDVK GCYK+ +FS VV+ GCST+ CQPT
Sbjct: 202 EKRKHKKKHLVQSPSSYFMDVKYLGCYKVPNIFSQEHTVVLYDGCSTVFCQPT 254
>UniRef50_Q6QI46 Cluster: LRRGT00162; n=1; Rattus norvegicus|Rep:
LRRGT00162 - Rattus norvegicus (Rat)
Length = 291
Score = 69.3 bits (162), Expect = 4e-11
Identities = 31/50 (62%), Positives = 37/50 (74%)
Frame = +1
Query: 49 ICCILPLPSERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVV 198
+C E+RKHK +RLV PNSYFMDV+CPG Y+ITTVFS AQ VV+
Sbjct: 172 VCLQTAAKEEQRKHKKRRLVQSPNSYFMDVQCPGRYEITTVFSRAQTVVL 221
>UniRef50_Q3LW62 Cluster: Ribosomal protein S27; n=1; Bigelowiella
natans|Rep: Ribosomal protein S27 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 93
Score = 66.5 bits (155), Expect = 3e-10
Identities = 27/57 (47%), Positives = 39/57 (68%)
Frame = +1
Query: 73 SERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILCQPTGGR 243
+E +KHKLKRL+ PNS+++ KC C KI +FSH+ C CST+L +P+GG+
Sbjct: 17 TEAKKHKLKRLIQSPNSHYIATKCLKCKKINIIFSHSVFWKTCVDCSTLLTRPSGGK 73
>UniRef50_A2DGQ3 Cluster: Ribosomal protein S27, putative; n=4;
Trichomonas vaginalis G3|Rep: Ribosomal protein S27,
putative - Trichomonas vaginalis G3
Length = 86
Score = 65.7 bits (153), Expect = 5e-10
Identities = 29/66 (43%), Positives = 37/66 (56%)
Frame = +1
Query: 76 ERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILCQPTGGRARLT 255
E +K K LVP+P S F+ ++CP C +TT FSH+ V C C T L PTGGR L
Sbjct: 16 EAHTNKKKTLVPNPRSEFLSLRCPSCTGLTTAFSHSNVPVFCKNCQTPLATPTGGRILLA 75
Query: 256 EGCSFR 273
+ R
Sbjct: 76 DQVEIR 81
>UniRef50_Q8SS34 Cluster: 40S RIBOSOMAL PROTEIN S27; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S27
- Encephalitozoon cuniculi
Length = 85
Score = 58.0 bits (134), Expect = 1e-07
Identities = 24/63 (38%), Positives = 36/63 (57%)
Frame = +1
Query: 88 HKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILCQPTGGRARLTEGCS 267
+K RL N +FM V+C GC T +SH+Q + C GC I+ +GGRA ++ C
Sbjct: 17 YKKDRLYREGNGFFMYVRCGGCRHTTCCYSHSQTNISCPGCGDIILTSSGGRAVVSPNCE 76
Query: 268 FRR 276
F++
Sbjct: 77 FKK 79
>UniRef50_Q9YF01 Cluster: 30S ribosomal protein S27e; n=4;
Thermoprotei|Rep: 30S ribosomal protein S27e - Aeropyrum
pernix
Length = 73
Score = 56.8 bits (131), Expect = 2e-07
Identities = 28/63 (44%), Positives = 35/63 (55%)
Frame = +1
Query: 64 PLPSERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILCQPTGGR 243
PLP RRK L+P P S F+ V CP C VFSH+ C C +L +PTGG+
Sbjct: 6 PLPIRRRKV----LIPRPRSRFLLVTCPKCGNRQVVFSHSTFRARCLNCGEVLVEPTGGK 61
Query: 244 ARL 252
AR+
Sbjct: 62 ARI 64
>UniRef50_Q22CK0 Cluster: Putative uncharacterized protein; n=1;
Tetrahymena thermophila SB210|Rep: Putative
uncharacterized protein - Tetrahymena thermophila SB210
Length = 217
Score = 55.2 bits (127), Expect = 7e-07
Identities = 22/41 (53%), Positives = 30/41 (73%)
Frame = +1
Query: 76 ERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVV 198
E++K+K KRL+ PNSYFMDVKC C I +FS+AQ ++
Sbjct: 13 EKQKNKFKRLIQAPNSYFMDVKCAQCQNIQMIFSNAQSTII 53
Score = 37.9 bits (84), Expect = 0.12
Identities = 13/24 (54%), Positives = 19/24 (79%)
Frame = +1
Query: 208 CSTILCQPTGGRARLTEGCSFRRK 279
CS ILC+PTGG+ ++ GC+F+ K
Sbjct: 193 CSAILCKPTGGKVQIQAGCAFKIK 216
>UniRef50_Q8ZTY4 Cluster: 30S ribosomal protein S27e; n=10;
Archaea|Rep: 30S ribosomal protein S27e - Pyrobaculum
aerophilum
Length = 67
Score = 55.2 bits (127), Expect = 7e-07
Identities = 24/52 (46%), Positives = 30/52 (57%)
Frame = +1
Query: 97 KRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILCQPTGGRARL 252
K L+P P S F+ +CP C FSHA VV C C +L PTGG+A+L
Sbjct: 7 KVLIPQPKSKFIKTRCPDCGNEQITFSHAAMVVRCLVCGRVLAIPTGGKAKL 58
>UniRef50_Q5T4L4 Cluster: Ribosomal protein S27; n=30; Fungi/Metazoa
group|Rep: Ribosomal protein S27 - Homo sapiens (Human)
Length = 66
Score = 51.2 bits (117), Expect = 1e-05
Identities = 23/30 (76%), Positives = 24/30 (80%), Gaps = 1/30 (3%)
Frame = +1
Query: 64 PLPSE-RRKHKLKRLVPHPNSYFMDVKCPG 150
P P E +RKHK KRLV PNSYFMDVKCPG
Sbjct: 10 PSPEEEKRKHKKKRLVQSPNSYFMDVKCPG 39
>UniRef50_A0RY94 Cluster: Ribosomal protein S27E; n=1; Cenarchaeum
symbiosum|Rep: Ribosomal protein S27E - Cenarchaeum
symbiosum
Length = 224
Score = 47.2 bits (107), Expect = 2e-04
Identities = 20/49 (40%), Positives = 28/49 (57%)
Frame = +1
Query: 106 VPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILCQPTGGRARL 252
VP P S F+ ++C C T V+S A+ V C C +L +P GG+A L
Sbjct: 8 VPEPTSRFVKIECESCGSPTIVYSMAKSAVNCRFCGNLLAEPAGGKAVL 56
>UniRef50_Q9HRT7 Cluster: 30S ribosomal protein S27e; n=7;
Euryarchaeota|Rep: 30S ribosomal protein S27e -
Halobacterium salinarium (Halobacterium halobium)
Length = 57
Score = 46.8 bits (106), Expect = 3e-04
Identities = 21/42 (50%), Positives = 24/42 (57%)
Frame = +1
Query: 127 FMDVKCPGCYKITTVFSHAQRVVVCAGCSTILCQPTGGRARL 252
F +V+CP C TVF A V CA C T L +PTGG A L
Sbjct: 5 FYNVECPDCENEQTVFGKASTEVACAVCGTTLARPTGGEADL 46
>UniRef50_Q8U474 Cluster: 30S ribosomal protein S27e; n=9;
Euryarchaeota|Rep: 30S ribosomal protein S27e -
Pyrococcus furiosus
Length = 63
Score = 46.0 bits (104), Expect = 5e-04
Identities = 21/49 (42%), Positives = 26/49 (53%)
Frame = +1
Query: 97 KRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILCQPTGGR 243
K ++P P S F+ VKC C VFSH V C C L +PTGG+
Sbjct: 3 KPIIPMPRSRFLRVKCIDCGNEQIVFSHPATKVRCLICGATLVEPTGGK 51
>UniRef50_Q8TY87 Cluster: 30S ribosomal protein S27e; n=13;
Archaea|Rep: 30S ribosomal protein S27e - Methanopyrus
kandleri
Length = 73
Score = 46.0 bits (104), Expect = 5e-04
Identities = 20/50 (40%), Positives = 28/50 (56%)
Frame = +1
Query: 103 LVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILCQPTGGRARL 252
LVP P S F+ V+C C +F +A V C C L +PTGG+A++
Sbjct: 15 LVPQPRSRFLRVECVDCGNEQIIFGNASTEVKCHICGRTLAKPTGGKAKI 64
>UniRef50_A7DPS1 Cluster: Ribosomal protein S27E; n=1; Candidatus
Nitrosopumilus maritimus SCM1|Rep: Ribosomal protein
S27E - Candidatus Nitrosopumilus maritimus SCM1
Length = 65
Score = 45.6 bits (103), Expect = 6e-04
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = +1
Query: 106 VPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILCQPTGGRARL 252
+P P+S F V C C ++ V+SHA V C C + + TG +A++
Sbjct: 8 IPKPSSKFQKVNCNECGELQIVYSHASTQVACNSCGNAIAEATGSKAKI 56
>UniRef50_UPI00006C13E4 Cluster: PREDICTED: similar to ribosomal
protein S27; n=1; Homo sapiens|Rep: PREDICTED: similar
to ribosomal protein S27 - Homo sapiens
Length = 83
Score = 44.4 bits (100), Expect = 0.001
Identities = 27/75 (36%), Positives = 34/75 (45%)
Frame = +1
Query: 61 LPLPSERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILCQPTGG 240
LP P +RR KRLV + Y MDVKC GC K V+ VV C C + P G
Sbjct: 7 LPHPLQRRSGNKKRLVQSQDCYVMDVKCSGCPKAAVVWEFC--VVDCPACRLL---PDRG 61
Query: 241 RARLTEGCSFRRKQH 285
+ + +QH
Sbjct: 62 TSEAYRKMLLQTEQH 76
>UniRef50_Q18KR1 Cluster: Ribosomal protein S27.eR; n=3;
Halobacteriaceae|Rep: Ribosomal protein S27.eR -
Haloquadratum walsbyi (strain DSM 16790)
Length = 75
Score = 41.5 bits (93), Expect = 0.010
Identities = 18/40 (45%), Positives = 21/40 (52%)
Frame = +1
Query: 127 FMDVKCPGCYKITTVFSHAQRVVVCAGCSTILCQPTGGRA 246
F ++CP C +F A VV CA C T L PTGG A
Sbjct: 5 FYQLQCPDCNNEQVIFGKASTVVNCAVCGTTLATPTGGDA 44
>UniRef50_Q9HIX2 Cluster: 30S ribosomal protein S27e; n=4;
Thermoplasmatales|Rep: 30S ribosomal protein S27e -
Thermoplasma acidophilum
Length = 65
Score = 39.1 bits (87), Expect = 0.053
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +1
Query: 118 NSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILCQPTGG 240
N +F+ +KC C + VF+ V C C + +PTGG
Sbjct: 13 NGHFVKIKCRDCGNVQVVFARPSSTVTCNICGATIAKPTGG 53
>UniRef50_Q1PS48 Cluster: Cxpwmw06; n=1; Periplaneta americana|Rep:
Cxpwmw06 - Periplaneta americana (American cockroach)
Length = 54
Score = 37.5 bits (83), Expect = 0.16
Identities = 17/54 (31%), Positives = 29/54 (53%)
Frame = -2
Query: 285 MLFXXXXXXXXXXXXXXXXXTKDR*ASSADHHSLCVTKNCCNLVTARALNIHEI 124
MLF T+DR S +++LC+T++ C+LV RAL++H++
Sbjct: 1 MLFSSKRATFSESRPATCWLTQDRRTSCTHYYTLCMTEHRCDLVATRALHVHKV 54
>UniRef50_Q8TGN0 Cluster: Uncharacterized protein YKL156C-A; n=1;
Saccharomyces cerevisiae|Rep: Uncharacterized protein
YKL156C-A - Saccharomyces cerevisiae (Baker's yeast)
Length = 38
Score = 35.5 bits (78), Expect = 0.65
Identities = 16/27 (59%), Positives = 20/27 (74%)
Frame = -3
Query: 152 QPGHLTSMK*ELGCGTSRLSLCFLLSD 72
QPGHLTS K +LG T+ +LCFL S+
Sbjct: 4 QPGHLTSRKYDLGPWTNVFNLCFLASE 30
>UniRef50_A7PBG8 Cluster: Chromosome chr16 scaffold_10, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr16 scaffold_10, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 302
Score = 34.3 bits (75), Expect = 1.5
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +1
Query: 118 NSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILCQPTGGRARLTEG 261
N++ + CP C + + ++V CAGC I+ QP G +R + G
Sbjct: 239 NNFVIKGNCPACRR--QFIGYKNQIVRCAGCGNIVWQPKGDVSRGSRG 284
>UniRef50_Q6QI40 Cluster: LRRGT00168; n=1; Rattus norvegicus|Rep:
LRRGT00168 - Rattus norvegicus (Rat)
Length = 109
Score = 33.5 bits (73), Expect = 2.6
Identities = 15/25 (60%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
Frame = +1
Query: 64 PLPSE-RRKHKLKRLVPHPNSYFMD 135
P P E +RK+K KRLV PNSYF++
Sbjct: 15 PCPEEEKRKYKKKRLVQSPNSYFVE 39
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 413,220,097
Number of Sequences: 1657284
Number of extensions: 7275119
Number of successful extensions: 15457
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 15166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15453
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 28437262108
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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