Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_E24
         (493 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0487 + 16471538-16471540,16471694-16471795,16471880-164719...   126   1e-29
02_03_0220 + 16545571-16545573,16545717-16545818,16545980-165460...    52   3e-07
04_03_0796 + 19721379-19721381,19721479-19721580,19722558-19722590     50   1e-06
03_02_0238 - 6687334-6687421,6687456-6687512,6688266-6688351,668...    27   8.2  
02_02_0279 - 8507603-8507620,8508040-8508060,8508613-8508835,850...    27   8.2  

>04_03_0487 +
           16471538-16471540,16471694-16471795,16471880-16471908,
           16472619-16472745
          Length = 86

 Score =  126 bits (303), Expect = 1e-29
 Identities = 54/72 (75%), Positives = 60/72 (83%)
 Frame = +1

Query: 64  PLPSERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILCQPTGGR 243
           P   E+ KHK KRLV  PNS+FMDVKC GC+ ITTVFSH+Q VVVC GC T+LCQPTGG+
Sbjct: 13  PAELEKLKHKKKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCPGCQTVLCQPTGGK 72

Query: 244 ARLTEGCSFRRK 279
           ARLTEGCSFRRK
Sbjct: 73  ARLTEGCSFRRK 84


>02_03_0220 +
           16545571-16545573,16545717-16545818,16545980-16546008,
           16549421-16553036
          Length = 1249

 Score = 51.6 bits (118), Expect = 3e-07
 Identities = 22/40 (55%), Positives = 27/40 (67%)
 Frame = +1

Query: 64  PLPSERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHA 183
           P   E+ KHK KRLV  PNS+FMDVKC GC+ ++  F  A
Sbjct: 13  PAELEKLKHKKKRLVQSPNSFFMDVKCQGCFNMSVRFDIA 52


>04_03_0796 + 19721379-19721381,19721479-19721580,19722558-19722590
          Length = 45

 Score = 49.6 bits (113), Expect = 1e-06
 Identities = 20/33 (60%), Positives = 24/33 (72%)
 Frame = +1

Query: 64  PLPSERRKHKLKRLVPHPNSYFMDVKCPGCYKI 162
           P   E+ KHK KRLV  PNS+FMDVKC GC+ +
Sbjct: 13  PAELEKLKHKKKRLVQSPNSFFMDVKCQGCFSM 45


>03_02_0238 -
           6687334-6687421,6687456-6687512,6688266-6688351,
           6688410-6688589
          Length = 136

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +1

Query: 151 CYKITTVFSHAQRVVVCAGCSTILCQPTGGR 243
           CYKI+ ++SH Q ++    C  IL +PTG R
Sbjct: 96  CYKISKIYSHGQSLL----CLDIL-RPTGRR 121


>02_02_0279 -
           8507603-8507620,8508040-8508060,8508613-8508835,
           8509204-8509553,8509631-8509729,8509811-8510105,
           8510200-8510405,8510498-8510689,8510766-8511163,
           8511258-8511444,8511473-8511528,8511800-8511872,
           8512012-8512872,8514353-8514778
          Length = 1134

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 17/42 (40%), Positives = 23/42 (54%)
 Frame = +2

Query: 68  CRRRGGNISLSG*CHILTLISWMLSALAVTRLQQFLVTHREW 193
           CRR+GG+ +L+G C +  L  WM   L V R      TH+ W
Sbjct: 650 CRRQGGDANLAG-C-VWLLQVWMWMRLPVGR--PMWRTHQAW 687


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,527,865
Number of Sequences: 37544
Number of extensions: 212464
Number of successful extensions: 468
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)