Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_E21
         (738 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    23   1.9  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    23   1.9  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    23   1.9  
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    23   2.6  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   3.4  

>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 10/41 (24%), Positives = 21/41 (51%)
 Frame = +3

Query: 237 SFPTFAARGTVPTPYKFELTFSLSRTLKKLALNTQLNIKIY 359
           + P FA+RG++  P ++++        K    + Q+N  +Y
Sbjct: 272 TIPPFASRGSMHFPNQYQMNQEYRTDRKHTQQHYQMNQNMY 312


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 10/41 (24%), Positives = 21/41 (51%)
 Frame = +3

Query: 237 SFPTFAARGTVPTPYKFELTFSLSRTLKKLALNTQLNIKIY 359
           + P FA+RG++  P ++++        K    + Q+N  +Y
Sbjct: 220 TIPPFASRGSMHFPNQYQMNQEYRTDRKHTQQHYQMNQNMY 260


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 10/41 (24%), Positives = 21/41 (51%)
 Frame = +3

Query: 237 SFPTFAARGTVPTPYKFELTFSLSRTLKKLALNTQLNIKIY 359
           + P FA+RG++  P ++++        K    + Q+N  +Y
Sbjct: 403 TIPPFASRGSMHFPNQYQMNQEYRTDRKHTQQHYQMNQNMY 443


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -3

Query: 133 LCPKHSPIIST*RRLAARGAVSTAYKFELTK 41
           L P H P++ T  +LAA G      + +L K
Sbjct: 240 LSPVHEPLLITTEKLAAEGQTKLPQQPKLFK 270


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 13/41 (31%), Positives = 16/41 (39%)
 Frame = -2

Query: 248 RRKAQHGIPHHWHLELDLSGNSHVGIDI*KPKMHSLIQTVP 126
           RR    G+   W+  +    N   G    KP    LIQ VP
Sbjct: 745 RRHNFKGLHLDWNYPVCWQSNCKKGASSDKPNFTKLIQVVP 785


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,402
Number of Sequences: 336
Number of extensions: 3291
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19779950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)